RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 NUTM2AQ8IVF1 878 aaPredicted RBP7.96□□□□□ -1.14
SNRNP40-204ENST00000474025 ROCK1Q13464 1354 aa7.96□□□□□ -1.14
SNRNP40-204ENST00000474025 RGS12O14924 1447 aa7.95□□□□□ -1.14
SNRNP40-204ENST00000474025 ADGRL3Q9HAR2 1447 aa7.95□□□□□ -1.14
SNRNP40-204ENST00000474025 NUP155O75694 1391 aa7.94□□□□□ -1.14
SNRNP40-204ENST00000474025 METP08581 1390 aa7.94□□□□□ -1.14
SNRNP40-204ENST00000474025 PNPLA6Q8IY17 1366 aa7.94□□□□□ -1.14
SNRNP40-204ENST00000474025 REM2Q8IYK8 340 aaPredicted RBP7.93□□□□□ -1.14
SNRNP40-204ENST00000474025 LRRC59Q96AG4 307 aaKnown RBP7.93□□□□□ -1.14
SNRNP40-204ENST00000474025 NALCNQ8IZF0 1738 aa7.92□□□□□ -1.14
SNRNP40-204ENST00000474025 RBM6P78332 1123 aaKnown RBP7.92□□□□□ -1.14
SNRNP40-204ENST00000474025 DDX17Q92841 729 aaKnown RBP7.92□□□□□ -1.14
SNRNP40-204ENST00000474025 C8orf37Q96NL8 207 aa7.92□□□□□ -1.14
SNRNP40-204ENST00000474025 SPHKAPQ2M3C7 1700 aa7.92□□□□□ -1.14
SNRNP40-204ENST00000474025 SPDYE2BA6NHP3 402 aa7.91□□□□□ -1.14
SNRNP40-204ENST00000474025 SPDYE6P0CI01 402 aa7.91□□□□□ -1.14
SNRNP40-204ENST00000474025 SPDYE2Q495Y8 402 aa7.91□□□□□ -1.14
SNRNP40-204ENST00000474025 QTRT2Q9H974 415 aaKnown RBP7.91□□□□□ -1.14
SNRNP40-204ENST00000474025 NEXMIFQ5QGS0 1516 aa7.91□□□□□ -1.14
SNRNP40-204ENST00000474025 LAMC1P11047 1609 aa7.91□□□□□ -1.14
SNRNP40-204ENST00000474025 C1orf167Q5SNV9 1468 aa7.9□□□□□ -1.14
SNRNP40-204ENST00000474025 PTCH1Q13635 1447 aa7.9□□□□□ -1.14
SNRNP40-204ENST00000474025 ZNF326Q5BKZ1 582 aaKnown RBP7.9□□□□□ -1.14
SNRNP40-204ENST00000474025 ZRANB1Q9UGI0 708 aa7.9□□□□□ -1.14
SNRNP40-204ENST00000474025 ADAMTS2O95450 1211 aa7.89□□□□□ -1.15
SNRNP40-204ENST00000474025 CLTCL1P53675 1640 aa7.89□□□□□ -1.15
SNRNP40-204ENST00000474025 PRAG1Q86YV5 1406 aa7.88□□□□□ -1.15
SNRNP40-204ENST00000474025 ATAD2Q6PL18 1390 aa7.88□□□□□ -1.15
SNRNP40-204ENST00000474025 ROBO2Q9HCK4 1378 aa7.88□□□□□ -1.15
SNRNP40-204ENST00000474025 SOS2Q07890 1332 aaPredicted RBP7.88□□□□□ -1.15
SNRNP40-204ENST00000474025 MKRN4PQ13434 485 aaPredicted RBP7.88□□□□□ -1.15
SNRNP40-204ENST00000474025 NGLY1Q96IV0 654 aa7.88□□□□□ -1.15
SNRNP40-204ENST00000474025 CCDC125Q86Z20 511 aa7.87□□□□□ -1.15
SNRNP40-204ENST00000474025 FNBP4Q8N3X1 1017 aaPredicted RBP7.87□□□□□ -1.15
SNRNP40-204ENST00000474025 MYOM2P54296 1465 aa7.87□□□□□ -1.15
SNRNP40-204ENST00000474025 ATRNO75882 1429 aa7.86□□□□□ -1.15
SNRNP40-204ENST00000474025 COL22A1Q8NFW1 1626 aaPredicted RBP7.86□□□□□ -1.15
SNRNP40-204ENST00000474025 ITGAEP38570 1179 aa7.86□□□□□ -1.15
SNRNP40-204ENST00000474025 ORAI2Q96SN7 254 aa7.86□□□□□ -1.15
SNRNP40-204ENST00000474025 USP21Q9UK80 565 aa7.86□□□□□ -1.15
SNRNP40-204ENST00000474025 TRPC5Q9UL62 973 aaPredicted RBP7.85□□□□□ -1.15
SNRNP40-204ENST00000474025 HFM1A2PYH4 1435 aa7.85□□□□□ -1.15
SNRNP40-204ENST00000474025 BCL9LQ86UU0 1499 aa7.84□□□□□ -1.15
SNRNP40-204ENST00000474025 PXDNQ92626 1479 aa7.84□□□□□ -1.15
SNRNP40-204ENST00000474025 PITPNM1O00562 1244 aa7.84□□□□□ -1.15
SNRNP40-204ENST00000474025 CDC42BPGQ6DT37 1551 aa7.84□□□□□ -1.15
SNRNP40-204ENST00000474025 KIF1BO60333 1816 aa7.83□□□□□ -1.16
SNRNP40-204ENST00000474025 VGFO15240 615 aaPredicted RBP7.83□□□□□ -1.16
SNRNP40-204ENST00000474025 NPHP3Q7Z494 1330 aa7.82□□□□□ -1.16
SNRNP40-204ENST00000474025 NAIPQ13075 1403 aa7.82□□□□□ -1.16
SNRNP40-204ENST00000474025 PIP4P2Q8N4L2 257 aa7.81□□□□□ -1.16
SNRNP40-204ENST00000474025 SSUH2Q9Y2M2 353 aa7.81□□□□□ -1.16
SNRNP40-204ENST00000474025 MARF1Q9Y4F3 1742 aaKnown RBP7.81□□□□□ -1.16
SNRNP40-204ENST00000474025 RPGRIP1LQ68CZ1 1315 aa7.8□□□□□ -1.16
SNRNP40-204ENST00000474025 TECPR2O15040 1411 aa7.8□□□□□ -1.16
SNRNP40-204ENST00000474025 PPLO60437 1756 aa7.8□□□□□ -1.16
SNRNP40-204ENST00000474025 FXR2P51116 673 aaKnown RBP eCLIP7.8□□□□□ -1.16
SNRNP40-204ENST00000474025 ESCO1Q5FWF5 840 aa7.8□□□□□ -1.16
SNRNP40-204ENST00000474025 GJD4Q96KN9 370 aaPredicted RBP7.8□□□□□ -1.16
SNRNP40-204ENST00000474025 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.8□□□□□ -1.16
SNRNP40-204ENST00000474025 RALGAPBQ86X10 1494 aa7.8□□□□□ -1.16
SNRNP40-204ENST00000474025 RRBP1Q9P2E9 1410 aaKnown RBP7.79□□□□□ -1.16
SNRNP40-204ENST00000474025 SLIT2O94813 1529 aa7.79□□□□□ -1.16
SNRNP40-204ENST00000474025 FOXO3O43524 673 aa7.79□□□□□ -1.16
SNRNP40-204ENST00000474025 XPCQ01831 940 aaPredicted RBP7.79□□□□□ -1.16
SNRNP40-204ENST00000474025 ZNF692Q9BU19 519 aaPredicted RBP7.79□□□□□ -1.16
SNRNP40-204ENST00000474025 GLI3P10071 1580 aa7.79□□□□□ -1.16
SNRNP40-204ENST00000474025 BLMP54132 1417 aaPredicted RBP7.78□□□□□ -1.16
SNRNP40-204ENST00000474025 PPARGC1BQ86YN6 1023 aaKnown RBP7.78□□□□□ -1.16
SNRNP40-204ENST00000474025 UNC5CLQ8IV45 518 aa7.78□□□□□ -1.16
SNRNP40-204ENST00000474025 LRPPRCP42704 1394 aaKnown RBP7.78□□□□□ -1.16
SNRNP40-204ENST00000474025 USP32Q8NFA0 1604 aa7.78□□□□□ -1.16
SNRNP40-204ENST00000474025 CCDC144AA2RUR9 1427 aa7.78□□□□□ -1.16
SNRNP40-204ENST00000474025 SPATA31A3Q5VYP0 1347 aa7.77□□□□□ -1.17
SNRNP40-204ENST00000474025 ADGRF5Q8IZF2 1346 aa7.77□□□□□ -1.17
SNRNP40-204ENST00000474025 KIF1AQ12756 1690 aa7.76□□□□□ -1.17
SNRNP40-204ENST00000474025 ABCC11Q96J66 1382 aa7.76□□□□□ -1.17
SNRNP40-204ENST00000474025 PLEKHH1Q9ULM0 1364 aa7.76□□□□□ -1.17
SNRNP40-204ENST00000474025 KNDC1Q76NI1 1749 aa7.76□□□□□ -1.17
SNRNP40-204ENST00000474025 FMN2Q9NZ56 1722 aa7.76□□□□□ -1.17
SNRNP40-204ENST00000474025 NUTM2FA1L443 756 aa7.76□□□□□ -1.17
SNRNP40-204ENST00000474025 WAPLQ7Z5K2 1190 aa7.76□□□□□ -1.17
SNRNP40-204ENST00000474025 SPATA31E1Q6ZUB1 1445 aa7.76□□□□□ -1.17
SNRNP40-204ENST00000474025 UTRNP46939 3433 aa7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 SF3B2Q13435 895 aaKnown RBP7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 DEFB132Q7Z7B7 95 aa7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 SPDYE1Q8NFV5 336 aaPredicted RBP7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 STK26Q9P289 416 aa7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 PIK3C2GO75747 1445 aa7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 TNS3Q68CZ2 1445 aa7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 BRWD3Q6RI45 1802 aa7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 IFT172Q9UG01 1749 aa7.75□□□□□ -1.17
SNRNP40-204ENST00000474025 LRP5O75197 1615 aa7.74□□□□□ -1.17
SNRNP40-204ENST00000474025 SEPT12Q8IYM1 358 aa7.74□□□□□ -1.17
SNRNP40-204ENST00000474025 PLCH1Q4KWH8 1693 aa7.73□□□□□ -1.17
SNRNP40-204ENST00000474025 ANKRD30BQ9BXX2 1392 aa7.73□□□□□ -1.17
SNRNP40-204ENST00000474025 ABCA3Q99758 1704 aa7.73□□□□□ -1.17
SNRNP40-204ENST00000474025 NWD2Q9ULI1 1742 aa7.73□□□□□ -1.17
SNRNP40-204ENST00000474025 YTHDC2Q9H6S0 1430 aaKnown RBP7.73□□□□□ -1.17
SNRNP40-204ENST00000474025 ONECUT3O60422 494 aaPredicted RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms