RNA–Protein interactions for RNA: ENST00000473602.1

SHROOM3-204, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 789 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-204ENST00000473602 IFT172Q9UG01 1749 aa19.14■□□□□ 0.66
SHROOM3-204ENST00000473602 TRPC5Q9UL62 973 aaPredicted RBP19.14■□□□□ 0.65
SHROOM3-204ENST00000473602 SPATA31E1Q6ZUB1 1445 aa19.14■□□□□ 0.65
SHROOM3-204ENST00000473602 ATAD2Q6PL18 1390 aa19.12■□□□□ 0.65
SHROOM3-204ENST00000473602 FNBP4Q8N3X1 1017 aaPredicted RBP19.12■□□□□ 0.65
SHROOM3-204ENST00000473602 ROBO2Q9HCK4 1378 aa19.11■□□□□ 0.65
SHROOM3-204ENST00000473602 ANKRD30BQ9BXX2 1392 aa19.09■□□□□ 0.65
SHROOM3-204ENST00000473602 NALCNQ8IZF0 1738 aa19.08■□□□□ 0.64
SHROOM3-204ENST00000473602 PTCH1Q13635 1447 aa19.07■□□□□ 0.64
SHROOM3-204ENST00000473602 ZRANB1Q9UGI0 708 aa19.06■□□□□ 0.64
SHROOM3-204ENST00000473602 ESCO1Q5FWF5 840 aa19.05■□□□□ 0.64
SHROOM3-204ENST00000473602 ATRNO75882 1429 aa19.04■□□□□ 0.64
SHROOM3-204ENST00000473602 PRAG1Q86YV5 1406 aa19.04■□□□□ 0.64
SHROOM3-204ENST00000473602 RGL3Q3MIN7 710 aa19.03■□□□□ 0.64
SHROOM3-204ENST00000473602 EP400Q96L91 3159 aa19.02■□□□□ 0.64
SHROOM3-204ENST00000473602 FOXO3O43524 673 aa19.02■□□□□ 0.64
SHROOM3-204ENST00000473602 XPCQ01831 940 aaPredicted RBP19.02■□□□□ 0.64
SHROOM3-204ENST00000473602 LAMC1P11047 1609 aa19.02■□□□□ 0.64
SHROOM3-204ENST00000473602 MYOM2P54296 1465 aa19.02■□□□□ 0.63
SHROOM3-204ENST00000473602 NPHP3Q7Z494 1330 aa19.01■□□□□ 0.63
SHROOM3-204ENST00000473602 CCDC125Q86Z20 511 aa19.01■□□□□ 0.63
SHROOM3-204ENST00000473602 PIK3C2GO75747 1445 aa19■□□□□ 0.63
SHROOM3-204ENST00000473602 GJD4Q96KN9 370 aaPredicted RBP19■□□□□ 0.63
SHROOM3-204ENST00000473602 BCL9LQ86UU0 1499 aa19■□□□□ 0.63
SHROOM3-204ENST00000473602 ADGRF5Q8IZF2 1346 aa19■□□□□ 0.63
SHROOM3-204ENST00000473602 NRXN1Q9ULB1 1477 aa18.98■□□□□ 0.63
SHROOM3-204ENST00000473602 NUTM2FA1L443 756 aa18.98■□□□□ 0.63
SHROOM3-204ENST00000473602 STK26Q9P289 416 aa18.96■□□□□ 0.63
SHROOM3-204ENST00000473602 KNDC1Q76NI1 1749 aa18.96■□□□□ 0.63
SHROOM3-204ENST00000473602 WAPLQ7Z5K2 1190 aa18.95■□□□□ 0.62
SHROOM3-204ENST00000473602 PXDNQ92626 1479 aa18.95■□□□□ 0.62
SHROOM3-204ENST00000473602 LRPPRCP42704 1394 aaKnown RBP18.93■□□□□ 0.62
SHROOM3-204ENST00000473602 COL22A1Q8NFW1 1626 aaPredicted RBP18.93■□□□□ 0.62
SHROOM3-204ENST00000473602 UNC5CLQ8IV45 518 aa18.93■□□□□ 0.62
SHROOM3-204ENST00000473602 STAC3Q96MF2 364 aa18.93■□□□□ 0.62
SHROOM3-204ENST00000473602 TECPR2O15040 1411 aa18.92■□□□□ 0.62
SHROOM3-204ENST00000473602 TMEM132EQ6IEE7 984 aa18.89■□□□□ 0.61
SHROOM3-204ENST00000473602 C14orf93Q9H972 538 aaKnown RBP18.89■□□□□ 0.61
SHROOM3-204ENST00000473602 SPATA31A3Q5VYP0 1347 aa18.89■□□□□ 0.61
SHROOM3-204ENST00000473602 ABCC11Q96J66 1382 aa18.89■□□□□ 0.61
SHROOM3-204ENST00000473602 CDC42BPGQ6DT37 1551 aa18.89■□□□□ 0.61
SHROOM3-204ENST00000473602 DEFB132Q7Z7B7 95 aa18.88■□□□□ 0.61
SHROOM3-204ENST00000473602 RALGAPBQ86X10 1494 aa18.88■□□□□ 0.61
SHROOM3-204ENST00000473602 BLMP54132 1417 aaPredicted RBP18.87■□□□□ 0.61
SHROOM3-204ENST00000473602 KRT28Q7Z3Y7 464 aa18.87■□□□□ 0.61
SHROOM3-204ENST00000473602 YTHDC2Q9H6S0 1430 aaKnown RBP18.87■□□□□ 0.61
SHROOM3-204ENST00000473602 PLEKHH1Q9ULM0 1364 aa18.87■□□□□ 0.61
SHROOM3-204ENST00000473602 SLIT2O94813 1529 aa18.86■□□□□ 0.61
SHROOM3-204ENST00000473602 SEPT12Q8IYM1 358 aa18.86■□□□□ 0.61
SHROOM3-204ENST00000473602 DHX57Q6P158 1386 aaKnown RBP18.85■□□□□ 0.61
SHROOM3-204ENST00000473602 PLEKHG5O94827 1062 aa18.85■□□□□ 0.61
SHROOM3-204ENST00000473602 HAP1P54257 671 aaPredicted RBP18.84■□□□□ 0.61
SHROOM3-204ENST00000473602 TRIM26Q12899 539 aaPredicted RBP18.84■□□□□ 0.61
SHROOM3-204ENST00000473602 SF3B2Q13435 895 aaKnown RBP18.84■□□□□ 0.61
SHROOM3-204ENST00000473602 CABLES1Q8TDN4 633 aa18.84■□□□□ 0.61
SHROOM3-204ENST00000473602 DCAF11Q8TEB1 546 aa18.84■□□□□ 0.61
SHROOM3-204ENST00000473602 CFAP70Q5T0N1 1121 aa18.83■□□□□ 0.6
SHROOM3-204ENST00000473602 SIRT1Q96EB6 747 aa18.83■□□□□ 0.6
SHROOM3-204ENST00000473602 ADGRB1O14514 1584 aa18.83■□□□□ 0.6
SHROOM3-204ENST00000473602 GLI3P10071 1580 aa18.82■□□□□ 0.6
SHROOM3-204ENST00000473602 VPS72Q15906 364 aa18.82■□□□□ 0.6
SHROOM3-204ENST00000473602 DLC1Q96QB1 1528 aa18.82■□□□□ 0.6
SHROOM3-204ENST00000473602 PSME1Q06323 249 aa18.81■□□□□ 0.6
SHROOM3-204ENST00000473602 PHF8Q9UPP1 1060 aa18.81■□□□□ 0.6
SHROOM3-204ENST00000473602 CCDC9Q9Y3X0 531 aaKnown RBP18.81■□□□□ 0.6
SHROOM3-204ENST00000473602 KIAA1210Q9ULL0 1709 aa18.8■□□□□ 0.6
SHROOM3-204ENST00000473602 ONECUT3O60422 494 aaPredicted RBP18.8■□□□□ 0.6
SHROOM3-204ENST00000473602 KDM2AQ9Y2K7 1162 aa18.8■□□□□ 0.6
SHROOM3-204ENST00000473602 MARF1Q9Y4F3 1742 aaKnown RBP18.8■□□□□ 0.6
SHROOM3-204ENST00000473602 LMOD2Q6P5Q4 547 aa18.79■□□□□ 0.6
SHROOM3-204ENST00000473602 KRT27Q7Z3Y8 459 aa18.79■□□□□ 0.6
SHROOM3-204ENST00000473602 FAM83GA6ND36 823 aa18.77■□□□□ 0.6
SHROOM3-204ENST00000473602 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.77■□□□□ 0.59
SHROOM3-204ENST00000473602 FMN2Q9NZ56 1722 aa18.77■□□□□ 0.59
SHROOM3-204ENST00000473602 TNS3Q68CZ2 1445 aa18.76■□□□□ 0.59
SHROOM3-204ENST00000473602 USP32Q8NFA0 1604 aa18.74■□□□□ 0.59
SHROOM3-204ENST00000473602 ADGRB2O60241 1585 aa18.74■□□□□ 0.59
SHROOM3-204ENST00000473602 SBNO1A3KN83 1393 aa18.74■□□□□ 0.59
SHROOM3-204ENST00000473602 A0A0G2JS52 829 aa18.74■□□□□ 0.59
SHROOM3-204ENST00000473602 MYT1Q01538 1121 aa18.74■□□□□ 0.59
SHROOM3-204ENST00000473602 SAFB2Q14151 953 aaKnown RBP eCLIP18.74■□□□□ 0.59
SHROOM3-204ENST00000473602 PSDA5PKW4 1024 aaPredicted RBP18.73■□□□□ 0.59
SHROOM3-204ENST00000473602 ARHGEF28Q8N1W1 1705 aaKnown RBP18.73■□□□□ 0.59
SHROOM3-204ENST00000473602 PMFBP1Q8TBY8 1022 aa18.72■□□□□ 0.59
SHROOM3-204ENST00000473602 PRAM1Q96QH2 718 aa18.72■□□□□ 0.59
SHROOM3-204ENST00000473602 ARHGEF10O15013 1369 aa18.71■□□□□ 0.59
SHROOM3-204ENST00000473602 KIF1AQ12756 1690 aa18.71■□□□□ 0.59
SHROOM3-204ENST00000473602 BAG6P46379 1132 aa18.71■□□□□ 0.59
SHROOM3-204ENST00000473602 FAM98CQ17RN3 349 aaKnown RBP18.71■□□□□ 0.59
SHROOM3-204ENST00000473602 BRWD3Q6RI45 1802 aa18.7■□□□□ 0.58
SHROOM3-204ENST00000473602 BTG4Q9NY30 223 aa18.69■□□□□ 0.58
SHROOM3-204ENST00000473602 POGKQ9P215 609 aa18.69■□□□□ 0.58
SHROOM3-204ENST00000473602 TRAK1Q9UPV9 953 aa18.68■□□□□ 0.58
SHROOM3-204ENST00000473602 EN1Q05925 392 aaPredicted RBP18.67■□□□□ 0.58
SHROOM3-204ENST00000473602 SIN3AQ96ST3 1273 aa18.67■□□□□ 0.58
SHROOM3-204ENST00000473602 RGPD8O14715 1765 aaPredicted RBP18.67■□□□□ 0.58
SHROOM3-204ENST00000473602 FAM182BQ5T319 152 aa18.66■□□□□ 0.58
SHROOM3-204ENST00000473602 L3MBTL2Q969R5 705 aa18.66■□□□□ 0.58
SHROOM3-204ENST00000473602 ANKARQ7Z5J8 1434 aa18.66■□□□□ 0.58
SHROOM3-204ENST00000473602 EIF3AQ14152 1382 aaKnown RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms