RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 AFF2P51816 1311 aa20.12■□□□□ 0.81
CHD3-209ENST00000473376 ORAI2Q96SN7 254 aa20.12■□□□□ 0.81
CHD3-209ENST00000473376 NPHP3Q7Z494 1330 aa20.11■□□□□ 0.81
CHD3-209ENST00000473376 RGL3Q3MIN7 710 aa20.11■□□□□ 0.81
CHD3-209ENST00000473376 DDX17Q92841 729 aaKnown RBP20.1■□□□□ 0.81
CHD3-209ENST00000473376 IFT172Q9UG01 1749 aa20.08■□□□□ 0.81
CHD3-209ENST00000473376 RBM6P78332 1123 aaKnown RBP20.08■□□□□ 0.81
CHD3-209ENST00000473376 C14orf93Q9H972 538 aaKnown RBP20.08■□□□□ 0.81
CHD3-209ENST00000473376 NRXN1Q9ULB1 1477 aa20.07■□□□□ 0.8
CHD3-209ENST00000473376 HRCP23327 699 aa20.06■□□□□ 0.8
CHD3-209ENST00000473376 UPF1Q92900 1129 aaKnown RBP eCLIP20.06■□□□□ 0.8
CHD3-209ENST00000473376 STAC3Q96MF2 364 aa20.06■□□□□ 0.8
CHD3-209ENST00000473376 C8orf37Q96NL8 207 aa20.06■□□□□ 0.8
CHD3-209ENST00000473376 QTRT2Q9H974 415 aaKnown RBP20.06■□□□□ 0.8
CHD3-209ENST00000473376 MYOM2P54296 1465 aa20.05■□□□□ 0.8
CHD3-209ENST00000473376 YTHDC2Q9H6S0 1430 aaKnown RBP20.05■□□□□ 0.8
CHD3-209ENST00000473376 ESCO1Q5FWF5 840 aa20.05■□□□□ 0.8
CHD3-209ENST00000473376 FNBP4Q8N3X1 1017 aaPredicted RBP20.05■□□□□ 0.8
CHD3-209ENST00000473376 KNDC1Q76NI1 1749 aa20.05■□□□□ 0.8
CHD3-209ENST00000473376 NGLY1Q96IV0 654 aa20.04■□□□□ 0.8
CHD3-209ENST00000473376 COL22A1Q8NFW1 1626 aaPredicted RBP20.04■□□□□ 0.8
CHD3-209ENST00000473376 DHX57Q6P158 1386 aaKnown RBP20.03■□□□□ 0.8
CHD3-209ENST00000473376 WAPLQ7Z5K2 1190 aa20.02■□□□□ 0.8
CHD3-209ENST00000473376 STK26Q9P289 416 aa20.02■□□□□ 0.8
CHD3-209ENST00000473376 PXDNQ92626 1479 aa20.02■□□□□ 0.8
CHD3-209ENST00000473376 TMEM132EQ6IEE7 984 aa20.01■□□□□ 0.79
CHD3-209ENST00000473376 FOXO3O43524 673 aa20■□□□□ 0.79
CHD3-209ENST00000473376 TRPC5Q9UL62 973 aaPredicted RBP20■□□□□ 0.79
CHD3-209ENST00000473376 RAB3GAP2Q9H2M9 1393 aa19.99■□□□□ 0.79
CHD3-209ENST00000473376 ADAMTS2O95450 1211 aa19.99■□□□□ 0.79
CHD3-209ENST00000473376 USP21Q9UK80 565 aa19.99■□□□□ 0.79
CHD3-209ENST00000473376 PLEKHH1Q9ULM0 1364 aa19.97■□□□□ 0.79
CHD3-209ENST00000473376 DLC1Q96QB1 1528 aa19.96■□□□□ 0.79
CHD3-209ENST00000473376 RGS12O14924 1447 aa19.95■□□□□ 0.78
CHD3-209ENST00000473376 CFAP70Q5T0N1 1121 aa19.95■□□□□ 0.78
CHD3-209ENST00000473376 KIF1AQ12756 1690 aa19.94■□□□□ 0.78
CHD3-209ENST00000473376 SPATA31A3Q5VYP0 1347 aa19.94■□□□□ 0.78
CHD3-209ENST00000473376 ATRNO75882 1429 aa19.93■□□□□ 0.78
CHD3-209ENST00000473376 FMN2Q9NZ56 1722 aa19.93■□□□□ 0.78
CHD3-209ENST00000473376 PSME1Q06323 249 aa19.93■□□□□ 0.78
CHD3-209ENST00000473376 PHF8Q9UPP1 1060 aa19.91■□□□□ 0.78
CHD3-209ENST00000473376 SBNO1A3KN83 1393 aa19.91■□□□□ 0.78
CHD3-209ENST00000473376 ANKARQ7Z5J8 1434 aa19.91■□□□□ 0.78
CHD3-209ENST00000473376 BCL9LQ86UU0 1499 aa19.91■□□□□ 0.78
CHD3-209ENST00000473376 KRT28Q7Z3Y7 464 aa19.9■□□□□ 0.78
CHD3-209ENST00000473376 PRAM1Q96QH2 718 aa19.9■□□□□ 0.78
CHD3-209ENST00000473376 ATAD2Q6PL18 1390 aa19.9■□□□□ 0.78
CHD3-209ENST00000473376 ADGRB1O14514 1584 aa19.88■□□□□ 0.77
CHD3-209ENST00000473376 EIF3AQ14152 1382 aaKnown RBP19.88■□□□□ 0.77
CHD3-209ENST00000473376 NUTM2FA1L443 756 aa19.88■□□□□ 0.77
CHD3-209ENST00000473376 XPCQ01831 940 aaPredicted RBP19.87■□□□□ 0.77
CHD3-209ENST00000473376 POGKQ9P215 609 aa19.87■□□□□ 0.77
CHD3-209ENST00000473376 ADGRB2O60241 1585 aa19.87■□□□□ 0.77
CHD3-209ENST00000473376 TNS3Q68CZ2 1445 aa19.86■□□□□ 0.77
CHD3-209ENST00000473376 ARHGEF10O15013 1369 aa19.86■□□□□ 0.77
CHD3-209ENST00000473376 CCDC125Q86Z20 511 aa19.86■□□□□ 0.77
CHD3-209ENST00000473376 GJD4Q96KN9 370 aaPredicted RBP19.86■□□□□ 0.77
CHD3-209ENST00000473376 MARF1Q9Y4F3 1742 aaKnown RBP19.85■□□□□ 0.77
CHD3-209ENST00000473376 UNC5CLQ8IV45 518 aa19.85■□□□□ 0.77
CHD3-209ENST00000473376 SLIT2O94813 1529 aa19.85■□□□□ 0.77
CHD3-209ENST00000473376 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.83■□□□□ 0.77
CHD3-209ENST00000473376 DCAF11Q8TEB1 546 aa19.83■□□□□ 0.77
CHD3-209ENST00000473376 WASLO00401 505 aaPredicted RBP19.79■□□□□ 0.76
CHD3-209ENST00000473376 TRAK1Q9UPV9 953 aa19.79■□□□□ 0.76
CHD3-209ENST00000473376 USP32Q8NFA0 1604 aa19.79■□□□□ 0.76
CHD3-209ENST00000473376 ONECUT3O60422 494 aaPredicted RBP19.78■□□□□ 0.76
CHD3-209ENST00000473376 SAFB2Q14151 953 aaKnown RBP eCLIP19.78■□□□□ 0.76
CHD3-209ENST00000473376 GPRASP1Q5JY77 1395 aa19.78■□□□□ 0.76
CHD3-209ENST00000473376 VPS72Q15906 364 aa19.77■□□□□ 0.76
CHD3-209ENST00000473376 KDM2AQ9Y2K7 1162 aa19.77■□□□□ 0.76
CHD3-209ENST00000473376 TULP4Q9NRJ4 1543 aa19.76■□□□□ 0.75
CHD3-209ENST00000473376 HAP1P54257 671 aaPredicted RBP19.76■□□□□ 0.75
CHD3-209ENST00000473376 RALGAPBQ86X10 1494 aa19.75■□□□□ 0.75
CHD3-209ENST00000473376 RGPD8O14715 1765 aaPredicted RBP19.75■□□□□ 0.75
CHD3-209ENST00000473376 PMFBP1Q8TBY8 1022 aa19.73■□□□□ 0.75
CHD3-209ENST00000473376 NWD2Q9ULI1 1742 aa19.73■□□□□ 0.75
CHD3-209ENST00000473376 PRR36Q9H6K5 1346 aa19.73■□□□□ 0.75
CHD3-209ENST00000473376 MINK1Q8N4C8 1332 aaPredicted RBP19.72■□□□□ 0.75
CHD3-209ENST00000473376 GLI3P10071 1580 aa19.71■□□□□ 0.75
CHD3-209ENST00000473376 HIRIP3Q9BW71 556 aaPredicted RBP19.71■□□□□ 0.75
CHD3-209ENST00000473376 FAM83GA6ND36 823 aa19.7■□□□□ 0.74
CHD3-209ENST00000473376 LMOD2Q6P5Q4 547 aa19.7■□□□□ 0.74
CHD3-209ENST00000473376 CABLES1Q8TDN4 633 aa19.7■□□□□ 0.74
CHD3-209ENST00000473376 BLMP54132 1417 aaPredicted RBP19.68■□□□□ 0.74
CHD3-209ENST00000473376 TRPM3Q9HCF6 1732 aaPredicted RBP19.68■□□□□ 0.74
CHD3-209ENST00000473376 NGDNQ8NEJ9 315 aaKnown RBP19.68■□□□□ 0.74
CHD3-209ENST00000473376 KIAA1210Q9ULL0 1709 aa19.68■□□□□ 0.74
CHD3-209ENST00000473376 ALS2Q96Q42 1657 aa19.67■□□□□ 0.74
CHD3-209ENST00000473376 EP400Q96L91 3159 aa19.66■□□□□ 0.74
CHD3-209ENST00000473376 ABCA3Q99758 1704 aa19.66■□□□□ 0.74
CHD3-209ENST00000473376 SEPT12Q8IYM1 358 aa19.66■□□□□ 0.74
CHD3-209ENST00000473376 NUDT16Q96DE0 195 aaKnown RBP19.66■□□□□ 0.74
CHD3-209ENST00000473376 ZRANB1Q9UGI0 708 aa19.66■□□□□ 0.74
CHD3-209ENST00000473376 CCDC61Q9Y6R9 512 aa19.66■□□□□ 0.74
CHD3-209ENST00000473376 ATP7BP35670 1465 aa19.66■□□□□ 0.74
CHD3-209ENST00000473376 POLR3AO14802 1390 aaPredicted RBP19.65■□□□□ 0.74
CHD3-209ENST00000473376 ARHGEF28Q8N1W1 1705 aaKnown RBP19.65■□□□□ 0.74
CHD3-209ENST00000473376 PLEKHG3A1L390 1219 aa19.64■□□□□ 0.73
CHD3-209ENST00000473376 PLCH1Q4KWH8 1693 aa19.64■□□□□ 0.73
CHD3-209ENST00000473376 CDK19Q9BWU1 502 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms