RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 AFF2P51816 1311 aa29.29■■■□□ 2.28
COL9A3-210ENST00000472880 STK26Q9P289 416 aa29.29■■■□□ 2.28
COL9A3-210ENST00000472880 SOS2Q07890 1332 aaPredicted RBP29.27■■■□□ 2.28
COL9A3-210ENST00000472880 RAB3GAP2Q9H2M9 1393 aa29.26■■■□□ 2.28
COL9A3-210ENST00000472880 C8orf37Q96NL8 207 aa29.25■■■□□ 2.27
COL9A3-210ENST00000472880 ABCC11Q96J66 1382 aa29.25■■■□□ 2.27
COL9A3-210ENST00000472880 RXRBP28702 533 aa29.24■■■□□ 2.27
COL9A3-210ENST00000472880 TMEM132EQ6IEE7 984 aa29.24■■■□□ 2.27
COL9A3-210ENST00000472880 YTHDC2Q9H6S0 1430 aaKnown RBP29.23■■■□□ 2.27
COL9A3-210ENST00000472880 MYOM2P54296 1465 aa29.23■■■□□ 2.27
COL9A3-210ENST00000472880 ESCO1Q5FWF5 840 aa29.22■■■□□ 2.27
COL9A3-210ENST00000472880 WAPLQ7Z5K2 1190 aa29.22■■■□□ 2.27
COL9A3-210ENST00000472880 NPHP3Q7Z494 1330 aa29.21■■■□□ 2.27
COL9A3-210ENST00000472880 CDK12Q9NYV4 1490 aaPredicted RBP29.21■■■□□ 2.27
COL9A3-210ENST00000472880 PLEKHH1Q9ULM0 1364 aa29.2■■■□□ 2.26
COL9A3-210ENST00000472880 NRXN1Q9ULB1 1477 aa29.2■■■□□ 2.26
COL9A3-210ENST00000472880 ADAMTS2O95450 1211 aa29.19■■■□□ 2.26
COL9A3-210ENST00000472880 COL22A1Q8NFW1 1626 aaPredicted RBP29.19■■■□□ 2.26
COL9A3-210ENST00000472880 FMN2Q9NZ56 1722 aa29.17■■■□□ 2.26
COL9A3-210ENST00000472880 PXDNQ92626 1479 aa29.17■■■□□ 2.26
COL9A3-210ENST00000472880 NUTM2FA1L443 756 aa29.15■■■□□ 2.26
COL9A3-210ENST00000472880 NGLY1Q96IV0 654 aa29.15■■■□□ 2.26
COL9A3-210ENST00000472880 C14orf93Q9H972 538 aaKnown RBP29.15■■■□□ 2.26
COL9A3-210ENST00000472880 KIF1AQ12756 1690 aa29.13■■■□□ 2.25
COL9A3-210ENST00000472880 DHX57Q6P158 1386 aaKnown RBP29.13■■■□□ 2.25
COL9A3-210ENST00000472880 FOXO3O43524 673 aa29.12■■■□□ 2.25
COL9A3-210ENST00000472880 QTRT2Q9H974 415 aaKnown RBP29.12■■■□□ 2.25
COL9A3-210ENST00000472880 CFAP70Q5T0N1 1121 aa29.11■■■□□ 2.25
COL9A3-210ENST00000472880 SIRT1Q96EB6 747 aa29.11■■■□□ 2.25
COL9A3-210ENST00000472880 RBM6P78332 1123 aaKnown RBP29.1■■■□□ 2.25
COL9A3-210ENST00000472880 XPCQ01831 940 aaPredicted RBP29.1■■■□□ 2.25
COL9A3-210ENST00000472880 RGS12O14924 1447 aa29.09■■■□□ 2.25
COL9A3-210ENST00000472880 UPF1Q92900 1129 aaKnown RBP eCLIP29.08■■■□□ 2.25
COL9A3-210ENST00000472880 USP21Q9UK80 565 aa29.05■■■□□ 2.24
COL9A3-210ENST00000472880 DLC1Q96QB1 1528 aa29.04■■■□□ 2.24
COL9A3-210ENST00000472880 MARF1Q9Y4F3 1742 aaKnown RBP29.04■■■□□ 2.24
COL9A3-210ENST00000472880 PRAM1Q96QH2 718 aa29.03■■■□□ 2.24
COL9A3-210ENST00000472880 SAFB2Q14151 953 aaKnown RBP eCLIP29.01■■■□□ 2.23
COL9A3-210ENST00000472880 FNBP4Q8N3X1 1017 aaPredicted RBP29.01■■■□□ 2.23
COL9A3-210ENST00000472880 TRPC5Q9UL62 973 aaPredicted RBP29.01■■■□□ 2.23
COL9A3-210ENST00000472880 ADGRB1O14514 1584 aa29.01■■■□□ 2.23
COL9A3-210ENST00000472880 RGPD8O14715 1765 aaPredicted RBP29■■■□□ 2.23
COL9A3-210ENST00000472880 POGKQ9P215 609 aa28.99■■■□□ 2.23
COL9A3-210ENST00000472880 SPATA31A3Q5VYP0 1347 aa28.97■■■□□ 2.23
COL9A3-210ENST00000472880 ADGRB2O60241 1585 aa28.97■■■□□ 2.23
COL9A3-210ENST00000472880 ATRNO75882 1429 aa28.97■■■□□ 2.23
COL9A3-210ENST00000472880 HRCP23327 699 aa28.97■■■□□ 2.23
COL9A3-210ENST00000472880 PHF8Q9UPP1 1060 aa28.97■■■□□ 2.23
COL9A3-210ENST00000472880 KRT28Q7Z3Y7 464 aa28.96■■■□□ 2.23
COL9A3-210ENST00000472880 DCAF11Q8TEB1 546 aa28.96■■■□□ 2.23
COL9A3-210ENST00000472880 KDM2AQ9Y2K7 1162 aa28.96■■■□□ 2.23
COL9A3-210ENST00000472880 TNS3Q68CZ2 1445 aa28.94■■■□□ 2.22
COL9A3-210ENST00000472880 ANKARQ7Z5J8 1434 aa28.94■■■□□ 2.22
COL9A3-210ENST00000472880 BCL9LQ86UU0 1499 aa28.92■■■□□ 2.22
COL9A3-210ENST00000472880 USP32Q8NFA0 1604 aa28.92■■■□□ 2.22
COL9A3-210ENST00000472880 PSME1Q06323 249 aa28.92■■■□□ 2.22
COL9A3-210ENST00000472880 TRAK1Q9UPV9 953 aa28.92■■■□□ 2.22
COL9A3-210ENST00000472880 STAC3Q96MF2 364 aa28.91■■■□□ 2.22
COL9A3-210ENST00000472880 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.9■■■□□ 2.22
COL9A3-210ENST00000472880 ATAD2Q6PL18 1390 aa28.88■■■□□ 2.21
COL9A3-210ENST00000472880 SBNO1A3KN83 1393 aa28.88■■■□□ 2.21
COL9A3-210ENST00000472880 EIF3AQ14152 1382 aaKnown RBP28.88■■■□□ 2.21
COL9A3-210ENST00000472880 HAP1P54257 671 aaPredicted RBP28.87■■■□□ 2.21
COL9A3-210ENST00000472880 HIRIP3Q9BW71 556 aaPredicted RBP28.86■■■□□ 2.21
COL9A3-210ENST00000472880 MINK1Q8N4C8 1332 aaPredicted RBP28.85■■■□□ 2.21
COL9A3-210ENST00000472880 ARHGEF10O15013 1369 aa28.85■■■□□ 2.21
COL9A3-210ENST00000472880 SLIT2O94813 1529 aa28.84■■■□□ 2.21
COL9A3-210ENST00000472880 TULP4Q9NRJ4 1543 aa28.84■■■□□ 2.21
COL9A3-210ENST00000472880 ABCA3Q99758 1704 aa28.84■■■□□ 2.21
COL9A3-210ENST00000472880 LMOD2Q6P5Q4 547 aa28.83■■■□□ 2.21
COL9A3-210ENST00000472880 PMFBP1Q8TBY8 1022 aa28.83■■■□□ 2.21
COL9A3-210ENST00000472880 ARHGEF28Q8N1W1 1705 aaKnown RBP28.83■■■□□ 2.21
COL9A3-210ENST00000472880 UNC5CLQ8IV45 518 aa28.81■■■□□ 2.2
COL9A3-210ENST00000472880 GJD4Q96KN9 370 aaPredicted RBP28.81■■■□□ 2.2
COL9A3-210ENST00000472880 PLEKHG5O94827 1062 aa28.8■■■□□ 2.2
COL9A3-210ENST00000472880 CABLES1Q8TDN4 633 aa28.79■■■□□ 2.2
COL9A3-210ENST00000472880 TRPM3Q9HCF6 1732 aaPredicted RBP28.79■■■□□ 2.2
COL9A3-210ENST00000472880 PLCH1Q4KWH8 1693 aa28.78■■■□□ 2.2
COL9A3-210ENST00000472880 WASLO00401 505 aaPredicted RBP28.78■■■□□ 2.2
COL9A3-210ENST00000472880 RALGAPBQ86X10 1494 aa28.78■■■□□ 2.2
COL9A3-210ENST00000472880 GPRASP1Q5JY77 1395 aa28.77■■■□□ 2.2
COL9A3-210ENST00000472880 PRR36Q9H6K5 1346 aa28.77■■■□□ 2.2
COL9A3-210ENST00000472880 GLI3P10071 1580 aa28.77■■■□□ 2.2
COL9A3-210ENST00000472880 NWD2Q9ULI1 1742 aa28.76■■■□□ 2.19
COL9A3-210ENST00000472880 ITSN1Q15811 1721 aa28.74■■■□□ 2.19
COL9A3-210ENST00000472880 KIAA1210Q9ULL0 1709 aa28.74■■■□□ 2.19
COL9A3-210ENST00000472880 ALS2Q96Q42 1657 aa28.74■■■□□ 2.19
COL9A3-210ENST00000472880 NGDNQ8NEJ9 315 aaKnown RBP28.7■■■□□ 2.18
COL9A3-210ENST00000472880 ATP7BP35670 1465 aa28.7■■■□□ 2.18
COL9A3-210ENST00000472880 VPS72Q15906 364 aa28.67■■■□□ 2.18
COL9A3-210ENST00000472880 CCDC9Q9Y3X0 531 aaKnown RBP28.67■■■□□ 2.18
COL9A3-210ENST00000472880 NRAPQ86VF7 1730 aa28.63■■■□□ 2.17
COL9A3-210ENST00000472880 COL14A1Q05707 1796 aaKnown RBP28.63■■■□□ 2.17
COL9A3-210ENST00000472880 FAM83GA6ND36 823 aa28.63■■■□□ 2.17
COL9A3-210ENST00000472880 PAK3O75914 559 aaPredicted RBP28.63■■■□□ 2.17
COL9A3-210ENST00000472880 CCDC125Q86Z20 511 aa28.63■■■□□ 2.17
COL9A3-210ENST00000472880 NUDT16Q96DE0 195 aaKnown RBP28.63■■■□□ 2.17
COL9A3-210ENST00000472880 CRYBG1Q9Y4K1 1723 aa28.63■■■□□ 2.17
COL9A3-210ENST00000472880 BRWD3Q6RI45 1802 aa28.62■■■□□ 2.17
COL9A3-210ENST00000472880 TOPAZ1Q8N9V7 1692 aa28.62■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms