RNA–Protein interactions for RNA: ENST00000472442.2

SCAMP4-207, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2

Gene SCAMP4, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-207ENST00000472442 ARHGEF28Q8N1W1 1705 aaKnown RBP17.48■□□□□ 0.39
SCAMP4-207ENST00000472442 NPC1L1Q9UHC9 1359 aa17.47■□□□□ 0.39
SCAMP4-207ENST00000472442 PPP2R1AP30153 589 aa17.46■□□□□ 0.39
SCAMP4-207ENST00000472442 EXOC6Q8TAG9 804 aa17.46■□□□□ 0.39
SCAMP4-207ENST00000472442 RRP1P56182 461 aaKnown RBP17.45■□□□□ 0.38
SCAMP4-207ENST00000472442 TCERG1O14776 1098 aaKnown RBP17.45■□□□□ 0.38
SCAMP4-207ENST00000472442 PDE4AP27815 886 aa17.45■□□□□ 0.38
SCAMP4-207ENST00000472442 A2ML1A8K2U0 1454 aa17.44■□□□□ 0.38
SCAMP4-207ENST00000472442 ZMYM3Q14202 1370 aa17.43■□□□□ 0.38
SCAMP4-207ENST00000472442 STAG3Q9UJ98 1225 aa17.43■□□□□ 0.38
SCAMP4-207ENST00000472442 TULP4Q9NRJ4 1543 aa17.42■□□□□ 0.38
SCAMP4-207ENST00000472442 SLC12A5Q9H2X9 1139 aa17.42■□□□□ 0.38
SCAMP4-207ENST00000472442 USP35Q9P2H5 1018 aa17.42■□□□□ 0.38
SCAMP4-207ENST00000472442 STK26Q9P289 416 aa17.41■□□□□ 0.38
SCAMP4-207ENST00000472442 ALKQ9UM73 1620 aa17.41■□□□□ 0.38
SCAMP4-207ENST00000472442 BACH2Q9BYV9 841 aa17.4■□□□□ 0.38
SCAMP4-207ENST00000472442 BLMP54132 1417 aaPredicted RBP17.4■□□□□ 0.38
SCAMP4-207ENST00000472442 PTPRMP28827 1452 aa17.39■□□□□ 0.37
SCAMP4-207ENST00000472442 SAFB2Q14151 953 aaKnown RBP eCLIP17.39■□□□□ 0.37
SCAMP4-207ENST00000472442 INSRP06213 1382 aa17.39■□□□□ 0.37
SCAMP4-207ENST00000472442 YTHDC2Q9H6S0 1430 aaKnown RBP17.39■□□□□ 0.37
SCAMP4-207ENST00000472442 RCAN3Q9UKA8 241 aa17.38■□□□□ 0.37
SCAMP4-207ENST00000472442 EVC2Q86UK5 1308 aa17.38■□□□□ 0.37
SCAMP4-207ENST00000472442 RIMS2Q9UQ26 1411 aa17.38■□□□□ 0.37
SCAMP4-207ENST00000472442 PUS7Q96PZ0 661 aaKnown RBP17.37■□□□□ 0.37
SCAMP4-207ENST00000472442 ESF1Q9H501 851 aaKnown RBP17.37■□□□□ 0.37
SCAMP4-207ENST00000472442 ADAMTS8Q9UP79 889 aa17.37■□□□□ 0.37
SCAMP4-207ENST00000472442 NSD3Q9BZ95 1437 aa17.37■□□□□ 0.37
SCAMP4-207ENST00000472442 PPM1GO15355 546 aaPredicted RBP17.36■□□□□ 0.37
SCAMP4-207ENST00000472442 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.36■□□□□ 0.37
SCAMP4-207ENST00000472442 CABP2Q9NPB3 220 aa17.36■□□□□ 0.37
SCAMP4-207ENST00000472442 MS4A1P11836 297 aa17.35■□□□□ 0.37
SCAMP4-207ENST00000472442 PRAM1Q96QH2 718 aa17.35■□□□□ 0.37
SCAMP4-207ENST00000472442 SETD1AO15047 1707 aaKnown RBP17.33■□□□□ 0.37
SCAMP4-207ENST00000472442 TNRQ92752 1358 aa17.31■□□□□ 0.36
SCAMP4-207ENST00000472442 MINK1Q8N4C8 1332 aaPredicted RBP17.31■□□□□ 0.36
SCAMP4-207ENST00000472442 NRXN3Q9Y4C0 1643 aa17.31■□□□□ 0.36
SCAMP4-207ENST00000472442 SKAP1Q86WV1 359 aa17.31■□□□□ 0.36
SCAMP4-207ENST00000472442 ANKRD36BQ8N2N9 1353 aa17.3■□□□□ 0.36
SCAMP4-207ENST00000472442 POGKQ9P215 609 aa17.3■□□□□ 0.36
SCAMP4-207ENST00000472442 USP32Q8NFA0 1604 aa17.3■□□□□ 0.36
SCAMP4-207ENST00000472442 BRPF3Q9ULD4 1205 aa17.3■□□□□ 0.36
SCAMP4-207ENST00000472442 WDR43Q15061 677 aaKnown RBP eCLIP17.29■□□□□ 0.36
SCAMP4-207ENST00000472442 CDCA7LQ96GN5 454 aa17.29■□□□□ 0.36
SCAMP4-207ENST00000472442 SRPK2P78362 688 aaKnown RBP17.28■□□□□ 0.36
SCAMP4-207ENST00000472442 PDE3BQ13370 1112 aa17.28■□□□□ 0.36
SCAMP4-207ENST00000472442 PLIN1O60240 522 aa17.27■□□□□ 0.35
SCAMP4-207ENST00000472442 WAPLQ7Z5K2 1190 aa17.27■□□□□ 0.35
SCAMP4-207ENST00000472442 MORC1Q86VD1 984 aa17.27■□□□□ 0.35
SCAMP4-207ENST00000472442 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.27■□□□□ 0.35
SCAMP4-207ENST00000472442 DDRGK1Q96HY6 314 aa17.27■□□□□ 0.35
SCAMP4-207ENST00000472442 UBR1Q8IWV7 1749 aa17.26■□□□□ 0.35
SCAMP4-207ENST00000472442 DLC1Q96QB1 1528 aa17.26■□□□□ 0.35
SCAMP4-207ENST00000472442 METP08581 1390 aa17.26■□□□□ 0.35
SCAMP4-207ENST00000472442 PLEKHH1Q9ULM0 1364 aa17.26■□□□□ 0.35
SCAMP4-207ENST00000472442 A0A1W2PP64 1363 aa17.26■□□□□ 0.35
SCAMP4-207ENST00000472442 CGNL1Q0VF96 1302 aa17.26■□□□□ 0.35
SCAMP4-207ENST00000472442 CEBPAP49715 358 aaPredicted RBP17.26■□□□□ 0.35
SCAMP4-207ENST00000472442 GSE1Q14687 1217 aa17.25■□□□□ 0.35
SCAMP4-207ENST00000472442 ABCC11Q96J66 1382 aa17.25■□□□□ 0.35
SCAMP4-207ENST00000472442 TNNT2P45379 298 aaPredicted RBP17.25■□□□□ 0.35
SCAMP4-207ENST00000472442 TMEM2Q9UHN6 1383 aa17.25■□□□□ 0.35
SCAMP4-207ENST00000472442 NINLQ9Y2I6 1382 aa17.25■□□□□ 0.35
SCAMP4-207ENST00000472442 CDK19Q9BWU1 502 aa17.25■□□□□ 0.35
SCAMP4-207ENST00000472442 CD163L1Q9NR16 1453 aa17.24■□□□□ 0.35
SCAMP4-207ENST00000472442 POLR3AO14802 1390 aaPredicted RBP17.24■□□□□ 0.35
SCAMP4-207ENST00000472442 TRHP20396 242 aaPredicted RBP17.24■□□□□ 0.35
SCAMP4-207ENST00000472442 ATAD2Q6PL18 1390 aa17.24■□□□□ 0.35
SCAMP4-207ENST00000472442 NFKBIBQ15653 356 aa17.24■□□□□ 0.35
SCAMP4-207ENST00000472442 SLC4A3P48751 1232 aa17.23■□□□□ 0.35
SCAMP4-207ENST00000472442 CRBNQ96SW2 442 aa17.22■□□□□ 0.35
SCAMP4-207ENST00000472442 CCDC146Q8IYE0 955 aa17.22■□□□□ 0.35
SCAMP4-207ENST00000472442 ZNF521Q96K83 1311 aa17.21■□□□□ 0.35
SCAMP4-207ENST00000472442 NSD2O96028 1365 aa17.2■□□□□ 0.34
SCAMP4-207ENST00000472442 HDGFP51858 240 aaKnown RBP17.2■□□□□ 0.34
SCAMP4-207ENST00000472442 C3P01024 1663 aa17.2■□□□□ 0.34
SCAMP4-207ENST00000472442 SHPRHQ149N8 1683 aa17.2■□□□□ 0.34
SCAMP4-207ENST00000472442 FRAT1Q92837 279 aaPredicted RBP17.19■□□□□ 0.34
SCAMP4-207ENST00000472442 LTKP29376 864 aa17.19■□□□□ 0.34
SCAMP4-207ENST00000472442 TXNDC2Q86VQ3 553 aa17.19■□□□□ 0.34
SCAMP4-207ENST00000472442 NLRP1Q9C000 1473 aa17.19■□□□□ 0.34
SCAMP4-207ENST00000472442 MTHFSP49914 203 aa17.19■□□□□ 0.34
SCAMP4-207ENST00000472442 CABP1Q9NZU7 370 aa17.19■□□□□ 0.34
SCAMP4-207ENST00000472442 TERF2IPQ9NYB0 399 aa17.18■□□□□ 0.34
SCAMP4-207ENST00000472442 ADAMTS13Q76LX8 1427 aa17.18■□□□□ 0.34
SCAMP4-207ENST00000472442 APAF1O14727 1248 aa17.17■□□□□ 0.34
SCAMP4-207ENST00000472442 TECPR2O15040 1411 aa17.17■□□□□ 0.34
SCAMP4-207ENST00000472442 GGNBP2Q9H3C7 697 aa17.16■□□□□ 0.34
SCAMP4-207ENST00000472442 FYB1O15117 783 aa17.16■□□□□ 0.34
SCAMP4-207ENST00000472442 DAXXQ9UER7 740 aaPredicted RBP17.16■□□□□ 0.34
SCAMP4-207ENST00000472442 FER1L4A9Z1Z3 1794 aa17.16■□□□□ 0.34
SCAMP4-207ENST00000472442 KNDC1Q76NI1 1749 aa17.16■□□□□ 0.34
SCAMP4-207ENST00000472442 PLPPR3Q6T4P5 718 aa17.15■□□□□ 0.34
SCAMP4-207ENST00000472442 FAM135BQ49AJ0 1406 aa17.14■□□□□ 0.34
SCAMP4-207ENST00000472442 C20orf194Q5TEA3 1177 aa17.14■□□□□ 0.33
SCAMP4-207ENST00000472442 SIRT1Q96EB6 747 aa17.14■□□□□ 0.33
SCAMP4-207ENST00000472442 DUSP27Q5VZP5 1158 aa17.14■□□□□ 0.33
SCAMP4-207ENST00000472442 CPS1P31327 1500 aa17.13■□□□□ 0.33
SCAMP4-207ENST00000472442 WASLO00401 505 aaPredicted RBP17.13■□□□□ 0.33
SCAMP4-207ENST00000472442 PLEKHG1Q9ULL1 1385 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms