RNA–Protein interactions for RNA: ENST00000472411.1

TMEM9-208, Transcript of transmembrane protein 9, human

TSL 2

Gene TMEM9, Length 2,892 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM9-208	ENST00000472411	NSD3	Q9BZ95	1437 aa		13.65	□□□□□ -0.22
TMEM9-208	ENST00000472411	TRAK1	Q9UPV9	953 aa		13.65	□□□□□ -0.22
TMEM9-208	ENST00000472411	PHF23	Q9BUL5	403 aa	Predicted RBP	13.64	□□□□□ -0.23
TMEM9-208	ENST00000472411	SHPRH	Q149N8	1683 aa		13.64	□□□□□ -0.23
TMEM9-208	ENST00000472411	CFAP65	Q6ZU64	1925 aa	Known RBP	13.64	□□□□□ -0.23
TMEM9-208	ENST00000472411	IFT172	Q9UG01	1749 aa		13.64	□□□□□ -0.23
TMEM9-208	ENST00000472411	INO80	Q9ULG1	1556 aa	Predicted RBP	13.64	□□□□□ -0.23
TMEM9-208	ENST00000472411	MROH1	Q8NDA8	1641 aa		13.63	□□□□□ -0.23
TMEM9-208	ENST00000472411	PMFBP1	Q8TBY8	1022 aa		13.63	□□□□□ -0.23
TMEM9-208	ENST00000472411	FANCA	O15360	1455 aa		13.63	□□□□□ -0.23
TMEM9-208	ENST00000472411	WDR63	Q8IWG1	891 aa		13.63	□□□□□ -0.23
TMEM9-208	ENST00000472411	BCL2L13	Q9BXK5	485 aa		13.63	□□□□□ -0.23
TMEM9-208	ENST00000472411	MYO3A	Q8NEV4	1616 aa		13.63	□□□□□ -0.23
TMEM9-208	ENST00000472411	MROH2A	A6NES4	1674 aa		13.62	□□□□□ -0.23
TMEM9-208	ENST00000472411	NRXN1	Q9ULB1	1477 aa		13.62	□□□□□ -0.23
TMEM9-208	ENST00000472411	CHGA	P10645	457 aa	Known RBP	13.62	□□□□□ -0.23
TMEM9-208	ENST00000472411	MTHFS	P49914	203 aa		13.62	□□□□□ -0.23
TMEM9-208	ENST00000472411	NOS1	P29475	1434 aa		13.62	□□□□□ -0.23
TMEM9-208	ENST00000472411	BECN1	Q14457	450 aa		13.61	□□□□□ -0.23
TMEM9-208	ENST00000472411	AAMP	Q13685	434 aa		13.61	□□□□□ -0.23
TMEM9-208	ENST00000472411	PDZRN3	Q9UPQ7	1066 aa		13.61	□□□□□ -0.23
TMEM9-208	ENST00000472411	NLRP1	Q9C000	1473 aa		13.6	□□□□□ -0.23
TMEM9-208	ENST00000472411	TMEM132E	Q6IEE7	984 aa		13.6	□□□□□ -0.23
TMEM9-208	ENST00000472411	SLK	Q9H2G2	1235 aa	Predicted RBP	13.6	□□□□□ -0.23
TMEM9-208	ENST00000472411	C14orf93	Q9H972	538 aa	Known RBP	13.6	□□□□□ -0.23
TMEM9-208	ENST00000472411	ABCA9	Q8IUA7	1624 aa		13.59	□□□□□ -0.23
TMEM9-208	ENST00000472411	ADGRL1	O94910	1474 aa		13.59	□□□□□ -0.23
TMEM9-208	ENST00000472411	IQSEC2	Q5JU85	1478 aa		13.59	□□□□□ -0.23
TMEM9-208	ENST00000472411	EFCAB6	Q5THR3	1501 aa		13.59	□□□□□ -0.23
TMEM9-208	ENST00000472411	CCDC27	Q2M243	656 aa		13.59	□□□□□ -0.23
TMEM9-208	ENST00000472411	PPRC1	Q5VV67	1664 aa	Known RBP	13.58	□□□□□ -0.24
TMEM9-208	ENST00000472411	POGK	Q9P215	609 aa		13.58	□□□□□ -0.24
TMEM9-208	ENST00000472411	SETBP1	Q9Y6X0	1596 aa		13.58	□□□□□ -0.24
TMEM9-208	ENST00000472411	TBC1D32	Q96NH3	1257 aa		13.57	□□□□□ -0.24
TMEM9-208	ENST00000472411	RWDD1	Q9H446	243 aa	Predicted RBP	13.57	□□□□□ -0.24
TMEM9-208	ENST00000472411	CFAP53	Q96M91	514 aa		13.57	□□□□□ -0.24
TMEM9-208	ENST00000472411	ANTXR1	Q9H6X2	564 aa		13.57	□□□□□ -0.24
TMEM9-208	ENST00000472411	ZNF518A	Q6AHZ1	1483 aa		13.57	□□□□□ -0.24
TMEM9-208	ENST00000472411	UPF2	Q9HAU5	1272 aa	Known RBP	13.57	□□□□□ -0.24
TMEM9-208	ENST00000472411	QRICH2	Q9H0J4	1663 aa		13.56	□□□□□ -0.24
TMEM9-208	ENST00000472411	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.56	□□□□□ -0.24
TMEM9-208	ENST00000472411	MYH16	Q9H6N6	1097 aa		13.56	□□□□□ -0.24
TMEM9-208	ENST00000472411	ZC3H13	Q5T200	1668 aa	Known RBP	13.56	□□□□□ -0.24
TMEM9-208	ENST00000472411	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.55	□□□□□ -0.24
TMEM9-208	ENST00000472411	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
TMEM9-208	ENST00000472411	TBC1D2	Q9BYX2	928 aa		13.55	□□□□□ -0.24
TMEM9-208	ENST00000472411	ADGRB3	O60242	1522 aa		13.55	□□□□□ -0.24
TMEM9-208	ENST00000472411	KIDINS220	Q9ULH0	1771 aa		13.55	□□□□□ -0.24
TMEM9-208	ENST00000472411	MVP	Q14764	893 aa	Known RBP	13.55	□□□□□ -0.24
TMEM9-208	ENST00000472411	ADGRB1	O14514	1584 aa		13.54	□□□□□ -0.24
TMEM9-208	ENST00000472411	ZMYM3	Q14202	1370 aa		13.54	□□□□□ -0.24
TMEM9-208	ENST00000472411	PPL	O60437	1756 aa		13.54	□□□□□ -0.24
TMEM9-208	ENST00000472411	ZKSCAN2	Q63HK3	967 aa		13.54	□□□□□ -0.24
TMEM9-208	ENST00000472411	LMTK2	Q8IWU2	1503 aa		13.53	□□□□□ -0.24
TMEM9-208	ENST00000472411	NCBP3	Q53F19	620 aa	Known RBP	13.53	□□□□□ -0.24
TMEM9-208	ENST00000472411	DZIP1L	Q8IYY4	767 aa	Known RBP	13.53	□□□□□ -0.24
TMEM9-208	ENST00000472411	USP32	Q8NFA0	1604 aa		13.52	□□□□□ -0.24
TMEM9-208	ENST00000472411	GGT6	Q6P531	493 aa		13.52	□□□□□ -0.24
TMEM9-208	ENST00000472411	TSR2	Q969E8	191 aa	Known RBP	13.52	□□□□□ -0.24
TMEM9-208	ENST00000472411	NPAT	Q14207	1427 aa		13.51	□□□□□ -0.25
TMEM9-208	ENST00000472411	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.51	□□□□□ -0.25
TMEM9-208	ENST00000472411	FTSJ3	Q8IY81	847 aa	Known RBP	13.51	□□□□□ -0.25
TMEM9-208	ENST00000472411	EVC2	Q86UK5	1308 aa		13.51	□□□□□ -0.25
TMEM9-208	ENST00000472411	SPRYD3	Q8NCJ5	442 aa		13.5	□□□□□ -0.25
TMEM9-208	ENST00000472411	EXOSC9	Q06265	439 aa	Known RBP	13.5	□□□□□ -0.25
TMEM9-208	ENST00000472411	CABP2	Q9NPB3	220 aa		13.5	□□□□□ -0.25
TMEM9-208	ENST00000472411	RPGRIP1L	Q68CZ1	1315 aa		13.5	□□□□□ -0.25
TMEM9-208	ENST00000472411	ANKRD36B	Q8N2N9	1353 aa		13.5	□□□□□ -0.25
TMEM9-208	ENST00000472411	PUS7	Q96PZ0	661 aa	Known RBP	13.5	□□□□□ -0.25
TMEM9-208	ENST00000472411	SMC4	Q9NTJ3	1288 aa		13.49	□□□□□ -0.25
TMEM9-208	ENST00000472411	CT47B1	P0C2W7	299 aa	Predicted RBP	13.49	□□□□□ -0.25
TMEM9-208	ENST00000472411	TRIM27	P14373	513 aa		13.49	□□□□□ -0.25
TMEM9-208	ENST00000472411	FAM43A	Q8N2R8	423 aa		13.49	□□□□□ -0.25
TMEM9-208	ENST00000472411	SSH1	Q8WYL5	1049 aa		13.48	□□□□□ -0.25
TMEM9-208	ENST00000472411	PLEKHF1	Q96S99	279 aa		13.48	□□□□□ -0.25
TMEM9-208	ENST00000472411	U2SURP	O15042	1029 aa	Known RBP	13.48	□□□□□ -0.25
TMEM9-208	ENST00000472411	TMPO	P42166	694 aa	Known RBP	13.48	□□□□□ -0.25
TMEM9-208	ENST00000472411	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
TMEM9-208	ENST00000472411	C22orf23	Q9BZE7	217 aa		13.48	□□□□□ -0.25
TMEM9-208	ENST00000472411	TRIM35	Q9UPQ4	493 aa		13.48	□□□□□ -0.25
TMEM9-208	ENST00000472411	NSD2	O96028	1365 aa		13.48	□□□□□ -0.25
TMEM9-208	ENST00000472411	TULP4	Q9NRJ4	1543 aa		13.47	□□□□□ -0.25
TMEM9-208	ENST00000472411	ADGRB2	O60241	1585 aa		13.47	□□□□□ -0.25
TMEM9-208	ENST00000472411	HDAC1	Q13547	482 aa	Predicted RBP	13.47	□□□□□ -0.25
TMEM9-208	ENST00000472411	ASXL2	Q76L83	1435 aa		13.47	□□□□□ -0.25
TMEM9-208	ENST00000472411	MFAP1	P55081	439 aa	Known RBP	13.46	□□□□□ -0.25
TMEM9-208	ENST00000472411	CD109	Q6YHK3	1445 aa		13.46	□□□□□ -0.25
TMEM9-208	ENST00000472411	ITPRIP	Q8IWB1	547 aa		13.46	□□□□□ -0.25
TMEM9-208	ENST00000472411	GGNBP2	Q9H3C7	697 aa		13.46	□□□□□ -0.25
TMEM9-208	ENST00000472411	DDX19B	Q9UMR2	479 aa		13.46	□□□□□ -0.25
TMEM9-208	ENST00000472411	GLI2	P10070	1586 aa		13.46	□□□□□ -0.26
TMEM9-208	ENST00000472411	ATF7IP	Q6VMQ6	1270 aa		13.46	□□□□□ -0.26
TMEM9-208	ENST00000472411	NOB1	Q9ULX3	412 aa	Known RBP	13.46	□□□□□ -0.26
TMEM9-208	ENST00000472411	VGF	O15240	615 aa	Predicted RBP	13.45	□□□□□ -0.26
TMEM9-208	ENST00000472411	MCM4	P33991	863 aa		13.45	□□□□□ -0.26
TMEM9-208	ENST00000472411	L1TD1	Q5T7N2	865 aa	Known RBP	13.45	□□□□□ -0.26
TMEM9-208	ENST00000472411	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.45	□□□□□ -0.26
TMEM9-208	ENST00000472411	SMC5	Q8IY18	1101 aa		13.44	□□□□□ -0.26
TMEM9-208	ENST00000472411	TMEM57	Q8N5G2	664 aa		13.43	□□□□□ -0.26
TMEM9-208	ENST00000472411	SENP3	Q9H4L4	574 aa	Predicted RBP	13.43	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 240.9 ms