RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 PXDNQ92626 1479 aa28.18■■■□□ 2.1
SHH-205ENST00000472308 HFM1A2PYH4 1435 aa28.16■■■□□ 2.1
SHH-205ENST00000472308 CDC42BPGQ6DT37 1551 aa28.15■■■□□ 2.1
SHH-205ENST00000472308 MARF1Q9Y4F3 1742 aaKnown RBP28.14■■■□□ 2.1
SHH-205ENST00000472308 FOXD1Q16676 465 aa28.13■■■□□ 2.09
SHH-205ENST00000472308 VGFO15240 615 aaPredicted RBP28.12■■■□□ 2.09
SHH-205ENST00000472308 CCDC125Q86Z20 511 aa28.12■■■□□ 2.09
SHH-205ENST00000472308 NPHP3Q7Z494 1330 aa28.12■■■□□ 2.09
SHH-205ENST00000472308 GJD4Q96KN9 370 aaPredicted RBP28.1■■■□□ 2.09
SHH-205ENST00000472308 XPCQ01831 940 aaPredicted RBP28.08■■■□□ 2.09
SHH-205ENST00000472308 ESCO1Q5FWF5 840 aa28.08■■■□□ 2.09
SHH-205ENST00000472308 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.08■■■□□ 2.09
SHH-205ENST00000472308 GLI3P10071 1580 aa28.07■■■□□ 2.08
SHH-205ENST00000472308 PPLO60437 1756 aa28.06■■■□□ 2.08
SHH-205ENST00000472308 FOXO3O43524 673 aa28.05■■■□□ 2.08
SHH-205ENST00000472308 RALGAPBQ86X10 1494 aa28.04■■■□□ 2.08
SHH-205ENST00000472308 RPGRIP1LQ68CZ1 1315 aa28.04■■■□□ 2.08
SHH-205ENST00000472308 SLIT2O94813 1529 aa28.03■■■□□ 2.08
SHH-205ENST00000472308 NAIPQ13075 1403 aa28.03■■■□□ 2.08
SHH-205ENST00000472308 BLMP54132 1417 aaPredicted RBP28.02■■■□□ 2.08
SHH-205ENST00000472308 UNC5CLQ8IV45 518 aa27.99■■■□□ 2.07
SHH-205ENST00000472308 PPARGC1BQ86YN6 1023 aaKnown RBP27.98■■■□□ 2.07
SHH-205ENST00000472308 TECPR2O15040 1411 aa27.98■■■□□ 2.07
SHH-205ENST00000472308 LRPPRCP42704 1394 aaKnown RBP27.97■■■□□ 2.07
SHH-205ENST00000472308 NUTM2FA1L443 756 aa27.96■■■□□ 2.07
SHH-205ENST00000472308 DEFB132Q7Z7B7 95 aa27.96■■■□□ 2.07
SHH-205ENST00000472308 BRWD3Q6RI45 1802 aa27.96■■■□□ 2.07
SHH-205ENST00000472308 USP32Q8NFA0 1604 aa27.96■■■□□ 2.07
SHH-205ENST00000472308 SPATA31A3Q5VYP0 1347 aa27.94■■■□□ 2.06
SHH-205ENST00000472308 WAPLQ7Z5K2 1190 aa27.94■■■□□ 2.06
SHH-205ENST00000472308 PLEKHH1Q9ULM0 1364 aa27.93■■■□□ 2.06
SHH-205ENST00000472308 ADGRF5Q8IZF2 1346 aa27.92■■■□□ 2.06
SHH-205ENST00000472308 FMN2Q9NZ56 1722 aa27.91■■■□□ 2.06
SHH-205ENST00000472308 LRP5O75197 1615 aa27.91■■■□□ 2.06
SHH-205ENST00000472308 CCDC144AA2RUR9 1427 aa27.9■■■□□ 2.06
SHH-205ENST00000472308 RRBP1Q9P2E9 1410 aaKnown RBP27.9■■■□□ 2.06
SHH-205ENST00000472308 KIF1AQ12756 1690 aa27.9■■■□□ 2.06
SHH-205ENST00000472308 STK26Q9P289 416 aa27.89■■■□□ 2.06
SHH-205ENST00000472308 KNDC1Q76NI1 1749 aa27.88■■■□□ 2.05
SHH-205ENST00000472308 SEPT12Q8IYM1 358 aa27.88■■■□□ 2.05
SHH-205ENST00000472308 ABCC11Q96J66 1382 aa27.86■■■□□ 2.05
SHH-205ENST00000472308 SLC4A1APQ9BWU0 796 aaKnown RBP27.86■■■□□ 2.05
SHH-205ENST00000472308 PLCH1Q4KWH8 1693 aa27.84■■■□□ 2.05
SHH-205ENST00000472308 VPS72Q15906 364 aa27.84■■■□□ 2.05
SHH-205ENST00000472308 TNS3Q68CZ2 1445 aa27.84■■■□□ 2.05
SHH-205ENST00000472308 KRT28Q7Z3Y7 464 aa27.83■■■□□ 2.05
SHH-205ENST00000472308 IFT172Q9UG01 1749 aa27.83■■■□□ 2.05
SHH-205ENST00000472308 SPATA31E1Q6ZUB1 1445 aa27.83■■■□□ 2.05
SHH-205ENST00000472308 ONECUT3O60422 494 aaPredicted RBP27.82■■■□□ 2.04
SHH-205ENST00000472308 TMEM132EQ6IEE7 984 aa27.82■■■□□ 2.04
SHH-205ENST00000472308 ABCA3Q99758 1704 aa27.81■■■□□ 2.04
SHH-205ENST00000472308 NWD2Q9ULI1 1742 aa27.81■■■□□ 2.04
SHH-205ENST00000472308 SF3B2Q13435 895 aaKnown RBP27.81■■■□□ 2.04
SHH-205ENST00000472308 CABLES1Q8TDN4 633 aa27.81■■■□□ 2.04
SHH-205ENST00000472308 PIK3C2GO75747 1445 aa27.8■■■□□ 2.04
SHH-205ENST00000472308 YTHDC2Q9H6S0 1430 aaKnown RBP27.78■■■□□ 2.04
SHH-205ENST00000472308 KRT27Q7Z3Y8 459 aa27.78■■■□□ 2.04
SHH-205ENST00000472308 ANKRD30BQ9BXX2 1392 aa27.77■■■□□ 2.04
SHH-205ENST00000472308 RGL3Q3MIN7 710 aa27.76■■■□□ 2.03
SHH-205ENST00000472308 RGPD8O14715 1765 aaPredicted RBP27.76■■■□□ 2.03
SHH-205ENST00000472308 HAP1P54257 671 aaPredicted RBP27.75■■■□□ 2.03
SHH-205ENST00000472308 PSDA5PKW4 1024 aaPredicted RBP27.74■■■□□ 2.03
SHH-205ENST00000472308 PHF8Q9UPP1 1060 aa27.74■■■□□ 2.03
SHH-205ENST00000472308 NRXN1Q9ULB1 1477 aa27.74■■■□□ 2.03
SHH-205ENST00000472308 SBNO1A3KN83 1393 aa27.73■■■□□ 2.03
SHH-205ENST00000472308 PLEKHG5O94827 1062 aa27.73■■■□□ 2.03
SHH-205ENST00000472308 CCDC9Q9Y3X0 531 aaKnown RBP27.73■■■□□ 2.03
SHH-205ENST00000472308 NRAPQ86VF7 1730 aa27.72■■■□□ 2.03
SHH-205ENST00000472308 HRCP23327 699 aa27.71■■■□□ 2.03
SHH-205ENST00000472308 FAM83GA6ND36 823 aa27.7■■■□□ 2.02
SHH-205ENST00000472308 PSME1Q06323 249 aa27.7■■■□□ 2.02
SHH-205ENST00000472308 ARHGEF10O15013 1369 aa27.7■■■□□ 2.02
SHH-205ENST00000472308 SIRT1Q96EB6 747 aa27.69■■■□□ 2.02
SHH-205ENST00000472308 BAG6P46379 1132 aa27.68■■■□□ 2.02
SHH-205ENST00000472308 LMOD2Q6P5Q4 547 aa27.66■■■□□ 2.02
SHH-205ENST00000472308 FAM98CQ17RN3 349 aaKnown RBP27.65■■■□□ 2.02
SHH-205ENST00000472308 A0A0G2JS52 829 aa27.63■■■□□ 2.01
SHH-205ENST00000472308 MYT1Q01538 1121 aa27.63■■■□□ 2.01
SHH-205ENST00000472308 TRPM3Q9HCF6 1732 aaPredicted RBP27.62■■■□□ 2.01
SHH-205ENST00000472308 C14orf93Q9H972 538 aaKnown RBP27.62■■■□□ 2.01
SHH-205ENST00000472308 RGPD1P0DJD0 1748 aa27.61■■■□□ 2.01
SHH-205ENST00000472308 EN1Q05925 392 aaPredicted RBP27.61■■■□□ 2.01
SHH-205ENST00000472308 BTG4Q9NY30 223 aa27.6■■■□□ 2.01
SHH-205ENST00000472308 ANKARQ7Z5J8 1434 aa27.59■■■□□ 2.01
SHH-205ENST00000472308 COL14A1Q05707 1796 aaKnown RBP27.59■■■□□ 2.01
SHH-205ENST00000472308 SAFB2Q14151 953 aaKnown RBP eCLIP27.59■■■□□ 2.01
SHH-205ENST00000472308 FAM182BQ5T319 152 aa27.59■■■□□ 2.01
SHH-205ENST00000472308 PMFBP1Q8TBY8 1022 aa27.59■■■□□ 2.01
SHH-205ENST00000472308 PRAM1Q96QH2 718 aa27.59■■■□□ 2.01
SHH-205ENST00000472308 DISP2A7MBM2 1401 aa27.58■■■□□ 2.01
SHH-205ENST00000472308 CFAP70Q5T0N1 1121 aa27.58■■■□□ 2.01
SHH-205ENST00000472308 ALS2Q96Q42 1657 aa27.58■■■□□ 2.01
SHH-205ENST00000472308 THSD7AQ9UPZ6 1657 aa27.58■■■□□ 2.01
SHH-205ENST00000472308 TNS1Q9HBL0 1735 aaKnown RBP27.58■■■□□ 2.01
SHH-205ENST00000472308 DHX57Q6P158 1386 aaKnown RBP27.57■■■□□ 2
SHH-205ENST00000472308 ADGRB2O60241 1585 aa27.56■■■□□ 2
SHH-205ENST00000472308 R3HDM1Q15032 1099 aaKnown RBP27.56■■■□□ 2
SHH-205ENST00000472308 MPHOSPH9Q99550 1183 aa27.56■■■□□ 2
SHH-205ENST00000472308 DLC1Q96QB1 1528 aa27.55■■■□□ 2
SHH-205ENST00000472308 SPATA31A5Q5VU36 1347 aa27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms