RNA–Protein interactions for RNA: ENST00000471167.1

PRPF40A-206, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-206ENST00000471167 ANKLE1Q8NAG6 615 aa12.2□□□□□ -0.46
PRPF40A-206ENST00000471167 PCDHB15Q9Y5E8 787 aa12.2□□□□□ -0.46
PRPF40A-206ENST00000471167 KDM4CQ9H3R0 1056 aa12.19□□□□□ -0.46
PRPF40A-206ENST00000471167 GGCXP38435 758 aa12.18□□□□□ -0.46
PRPF40A-206ENST00000471167 Q3C1V9 767 aa12.18□□□□□ -0.46
PRPF40A-206ENST00000471167 USB1Q9BQ65 265 aaKnown RBP12.18□□□□□ -0.46
PRPF40A-206ENST00000471167 MMP16P51512 607 aa12.17□□□□□ -0.46
PRPF40A-206ENST00000471167 RSBN1LQ6PCB5 846 aaPredicted RBP12.17□□□□□ -0.46
PRPF40A-206ENST00000471167 FAM117AQ9C073 453 aa12.17□□□□□ -0.46
PRPF40A-206ENST00000471167 PLEKHG3A1L390 1219 aa12.16□□□□□ -0.46
PRPF40A-206ENST00000471167 MYSM1Q5VVJ2 828 aa12.16□□□□□ -0.46
PRPF40A-206ENST00000471167 V9GY48 417 aaPredicted RBP12.16□□□□□ -0.46
PRPF40A-206ENST00000471167 SPTLC1O15269 473 aa12.15□□□□□ -0.46
PRPF40A-206ENST00000471167 PRKCSHP14314 528 aaPredicted RBP12.15□□□□□ -0.46
PRPF40A-206ENST00000471167 LIMD1Q9UGP4 676 aa12.15□□□□□ -0.46
PRPF40A-206ENST00000471167 DXOO77932 396 aaKnown RBP12.14□□□□□ -0.47
PRPF40A-206ENST00000471167 FCF1Q9Y324 198 aaKnown RBP12.14□□□□□ -0.47
PRPF40A-206ENST00000471167 GJA5P36382 358 aa12.12□□□□□ -0.47
PRPF40A-206ENST00000471167 SLC19A1P41440 591 aa12.12□□□□□ -0.47
PRPF40A-206ENST00000471167 FBXO31Q5XUX0 539 aaPredicted RBP12.12□□□□□ -0.47
PRPF40A-206ENST00000471167 RIC3Q7Z5B4 369 aa12.12□□□□□ -0.47
PRPF40A-206ENST00000471167 TRIM67Q6ZTA4 783 aa12.11□□□□□ -0.47
PRPF40A-206ENST00000471167 RETREG3Q86VR2 466 aa12.11□□□□□ -0.47
PRPF40A-206ENST00000471167 BRPF1P55201 1214 aaPredicted RBP12.1□□□□□ -0.47
PRPF40A-206ENST00000471167 C6orf229H3BNL8 230 aa12.09□□□□□ -0.47
PRPF40A-206ENST00000471167 HRCP23327 699 aa12.09□□□□□ -0.47
PRPF40A-206ENST00000471167 QPCTQ16769 361 aa12.09□□□□□ -0.47
PRPF40A-206ENST00000471167 SPRYD7Q5W111 196 aa12.09□□□□□ -0.47
PRPF40A-206ENST00000471167 CABLES1Q8TDN4 633 aa12.09□□□□□ -0.47
PRPF40A-206ENST00000471167 DIXDC1Q155Q3 683 aa12.07□□□□□ -0.48
PRPF40A-206ENST00000471167 CFAP99D6REC4 459 aa12.06□□□□□ -0.48
PRPF40A-206ENST00000471167 JUNDP17535 347 aa12.06□□□□□ -0.48
PRPF40A-206ENST00000471167 POLR3EQ9NVU0 708 aa12.06□□□□□ -0.48
PRPF40A-206ENST00000471167 MTMR2Q13614 643 aa12.05□□□□□ -0.48
PRPF40A-206ENST00000471167 PRR7Q8TB68 274 aa12.05□□□□□ -0.48
PRPF40A-206ENST00000471167 LILRB3O75022 631 aa12.04□□□□□ -0.48
PRPF40A-206ENST00000471167 CSPP1Q1MSJ5 1256 aa12.04□□□□□ -0.48
PRPF40A-206ENST00000471167 TUSC1Q2TAM9 212 aa12.04□□□□□ -0.48
PRPF40A-206ENST00000471167 PTCRAQ6ISU1 281 aaPredicted RBP12.04□□□□□ -0.48
PRPF40A-206ENST00000471167 ZNF598Q86UK7 904 aaKnown RBP12.03□□□□□ -0.48
PRPF40A-206ENST00000471167 PROCA1Q8NCQ7 364 aaPredicted RBP12.03□□□□□ -0.48
PRPF40A-206ENST00000471167 IRX2Q9BZI1 471 aaPredicted RBP12.03□□□□□ -0.48
PRPF40A-206ENST00000471167 RTL5Q5HYW3 569 aaPredicted RBP12.02□□□□□ -0.49
PRPF40A-206ENST00000471167 LCE2BO14633 110 aa12.01□□□□□ -0.49
PRPF40A-206ENST00000471167 RPIAP49247 311 aa12.01□□□□□ -0.49
PRPF40A-206ENST00000471167 NEUROD2Q15784 382 aa12.01□□□□□ -0.49
PRPF40A-206ENST00000471167 PRPF38BQ5VTL8 546 aaKnown RBP12.01□□□□□ -0.49
PRPF40A-206ENST00000471167 GDF9O60383 454 aa12□□□□□ -0.49
PRPF40A-206ENST00000471167 CLK2P49760 499 aaKnown RBP12□□□□□ -0.49
PRPF40A-206ENST00000471167 PKD2L1Q9P0L9 805 aa12□□□□□ -0.49
PRPF40A-206ENST00000471167 SKIV2LQ15477 1246 aaKnown RBP11.99□□□□□ -0.49
PRPF40A-206ENST00000471167 SH3D19Q5HYK7 790 aa11.99□□□□□ -0.49
PRPF40A-206ENST00000471167 ZNF697Q5TEC3 545 aa11.99□□□□□ -0.49
PRPF40A-206ENST00000471167 DDRGK1Q96HY6 314 aa11.99□□□□□ -0.49
PRPF40A-206ENST00000471167 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.99□□□□□ -0.49
PRPF40A-206ENST00000471167 ZBTB3Q9H5J0 574 aa11.99□□□□□ -0.49
PRPF40A-206ENST00000471167 SPDYE5A6NIY4 337 aa11.98□□□□□ -0.49
PRPF40A-206ENST00000471167 DESI1Q6ICB0 168 aa11.98□□□□□ -0.49
PRPF40A-206ENST00000471167 RSPH6AQ9H0K4 717 aa11.98□□□□□ -0.49
PRPF40A-206ENST00000471167 PER1O15534 1290 aaPredicted RBP11.97□□□□□ -0.49
PRPF40A-206ENST00000471167 GFRA3O60609 400 aa11.97□□□□□ -0.49
PRPF40A-206ENST00000471167 CCDC24Q8N4L8 307 aa11.96□□□□□ -0.49
PRPF40A-206ENST00000471167 IL27Q8NEV9 243 aa11.96□□□□□ -0.49
PRPF40A-206ENST00000471167 NUDT12Q9BQG2 462 aa11.96□□□□□ -0.49
PRPF40A-206ENST00000471167 SKOR1P84550 965 aa11.95□□□□□ -0.5
PRPF40A-206ENST00000471167 PTPRNQ16849 979 aa11.95□□□□□ -0.5
PRPF40A-206ENST00000471167 LYPD8Q6UX82 237 aa11.95□□□□□ -0.5
PRPF40A-206ENST00000471167 PDZRN3Q9UPQ7 1066 aa11.95□□□□□ -0.5
PRPF40A-206ENST00000471167 TRIM32Q13049 653 aa11.94□□□□□ -0.5
PRPF40A-206ENST00000471167 EVA1BQ9NVM1 165 aa11.94□□□□□ -0.5
PRPF40A-206ENST00000471167 TNFRSF10AO00220 468 aa11.92□□□□□ -0.5
PRPF40A-206ENST00000471167 CCNYL3P0C7X3 344 aa11.92□□□□□ -0.5
PRPF40A-206ENST00000471167 PRR20EP86478 221 aa11.92□□□□□ -0.5
PRPF40A-206ENST00000471167 PRR20CP86479 221 aa11.92□□□□□ -0.5
PRPF40A-206ENST00000471167 PRR20DP86480 221 aa11.92□□□□□ -0.5
PRPF40A-206ENST00000471167 PRR20BP86481 221 aa11.92□□□□□ -0.5
PRPF40A-206ENST00000471167 PRR20AP86496 221 aa11.92□□□□□ -0.5
PRPF40A-206ENST00000471167 NRG2O14511 850 aaPredicted RBP11.91□□□□□ -0.5
PRPF40A-206ENST00000471167 CD2BP2O95400 341 aaKnown RBP11.91□□□□□ -0.5
PRPF40A-206ENST00000471167 F12P00748 615 aaPredicted RBP11.91□□□□□ -0.5
PRPF40A-206ENST00000471167 NUTM2BA6NNL0 878 aaPredicted RBP11.9□□□□□ -0.5
PRPF40A-206ENST00000471167 NUTM2EB1AL46 878 aaPredicted RBP11.9□□□□□ -0.5
PRPF40A-206ENST00000471167 NUTM2DQ5VT03 806 aaPredicted RBP11.9□□□□□ -0.5
PRPF40A-206ENST00000471167 NUTM2AQ8IVF1 878 aaPredicted RBP11.9□□□□□ -0.5
PRPF40A-206ENST00000471167 KCNH2Q12809 1159 aa11.89□□□□□ -0.51
PRPF40A-206ENST00000471167 FOXC1Q12948 553 aa11.89□□□□□ -0.51
PRPF40A-206ENST00000471167 PPP2R2DQ66LE6 453 aa11.89□□□□□ -0.51
PRPF40A-206ENST00000471167 MAP10Q9P2G4 905 aa11.89□□□□□ -0.51
PRPF40A-206ENST00000471167 ZBTB24O43167 697 aaPredicted RBP11.88□□□□□ -0.51
PRPF40A-206ENST00000471167 CTDSPL2Q05D32 466 aa11.88□□□□□ -0.51
PRPF40A-206ENST00000471167 UNC93B1Q9H1C4 597 aa11.87□□□□□ -0.51
PRPF40A-206ENST00000471167 GOPCQ9HD26 462 aa11.87□□□□□ -0.51
PRPF40A-206ENST00000471167 TOR4AQ9NXH8 423 aa11.86□□□□□ -0.51
PRPF40A-206ENST00000471167 LAPTM4AQ15012 233 aa11.85□□□□□ -0.51
PRPF40A-206ENST00000471167 WNT7AO00755 349 aa11.84□□□□□ -0.51
PRPF40A-206ENST00000471167 SH3BP2P78314 561 aa11.84□□□□□ -0.51
PRPF40A-206ENST00000471167 BAP1Q92560 729 aa11.84□□□□□ -0.51
PRPF40A-206ENST00000471167 TSC1Q92574 1164 aa11.83□□□□□ -0.52
PRPF40A-206ENST00000471167 MRGPRX2Q96LB1 330 aa11.83□□□□□ -0.52
PRPF40A-206ENST00000471167 RC3H1Q5TC82 1133 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms