RNA–Protein interactions for RNA: ENST00000469694.5

GPC1-208, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 2,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-208ENST00000469694 PDE4AP27815 886 aa18.29■□□□□ 0.52
GPC1-208ENST00000469694 AMER1Q5JTC6 1135 aaPredicted RBP18.29■□□□□ 0.52
GPC1-208ENST00000469694 CARD14Q9BXL6 1004 aa18.28■□□□□ 0.52
GPC1-208ENST00000469694 SLC12A5Q9H2X9 1139 aa18.27■□□□□ 0.52
GPC1-208ENST00000469694 BRPF3Q9ULD4 1205 aa18.27■□□□□ 0.52
GPC1-208ENST00000469694 CEBPAP49715 358 aaPredicted RBP18.27■□□□□ 0.51
GPC1-208ENST00000469694 BACH2Q9BYV9 841 aa18.27■□□□□ 0.51
GPC1-208ENST00000469694 MYOM1P52179 1685 aa18.26■□□□□ 0.51
GPC1-208ENST00000469694 GSE1Q14687 1217 aa18.25■□□□□ 0.51
GPC1-208ENST00000469694 KDM5AP29375 1690 aaKnown RBP18.25■□□□□ 0.51
GPC1-208ENST00000469694 ASXL1Q8IXJ9 1541 aa18.24■□□□□ 0.51
GPC1-208ENST00000469694 A2ML1A8K2U0 1454 aa18.24■□□□□ 0.51
GPC1-208ENST00000469694 MS4A1P11836 297 aa18.23■□□□□ 0.51
GPC1-208ENST00000469694 CABP2Q9NPB3 220 aa18.23■□□□□ 0.51
GPC1-208ENST00000469694 SPATA31D1Q6ZQQ2 1576 aa18.23■□□□□ 0.51
GPC1-208ENST00000469694 SBNO2Q9Y2G9 1366 aa18.23■□□□□ 0.51
GPC1-208ENST00000469694 ZFYVE9O95405 1425 aa18.23■□□□□ 0.51
GPC1-208ENST00000469694 QRICH2Q9H0J4 1663 aa18.22■□□□□ 0.51
GPC1-208ENST00000469694 LRPPRCP42704 1394 aaKnown RBP18.22■□□□□ 0.51
GPC1-208ENST00000469694 MYO3AQ8NEV4 1616 aa18.22■□□□□ 0.51
GPC1-208ENST00000469694 PRAM1Q96QH2 718 aa18.22■□□□□ 0.51
GPC1-208ENST00000469694 PPP2R1AP30153 589 aa18.21■□□□□ 0.51
GPC1-208ENST00000469694 MINK1Q8N4C8 1332 aaPredicted RBP18.21■□□□□ 0.51
GPC1-208ENST00000469694 RIMS2Q9UQ26 1411 aa18.2■□□□□ 0.5
GPC1-208ENST00000469694 SLC24A1O60721 1099 aa18.2■□□□□ 0.5
GPC1-208ENST00000469694 EXOC6Q8TAG9 804 aa18.18■□□□□ 0.5
GPC1-208ENST00000469694 POGKQ9P215 609 aa18.18■□□□□ 0.5
GPC1-208ENST00000469694 YTHDC2Q9H6S0 1430 aaKnown RBP18.18■□□□□ 0.5
GPC1-208ENST00000469694 ARHGEF28Q8N1W1 1705 aaKnown RBP18.18■□□□□ 0.5
GPC1-208ENST00000469694 EIF5BO60841 1220 aaKnown RBP18.17■□□□□ 0.5
GPC1-208ENST00000469694 TNNT2P45379 298 aaPredicted RBP18.17■□□□□ 0.5
GPC1-208ENST00000469694 RRP1P56182 461 aaKnown RBP18.17■□□□□ 0.5
GPC1-208ENST00000469694 TNRQ92752 1358 aa18.17■□□□□ 0.5
GPC1-208ENST00000469694 EVC2Q86UK5 1308 aa18.17■□□□□ 0.5
GPC1-208ENST00000469694 SRPK2P78362 688 aaKnown RBP18.16■□□□□ 0.5
GPC1-208ENST00000469694 WAPLQ7Z5K2 1190 aa18.16■□□□□ 0.5
GPC1-208ENST00000469694 TULP4Q9NRJ4 1543 aa18.16■□□□□ 0.5
GPC1-208ENST00000469694 ALKQ9UM73 1620 aa18.16■□□□□ 0.5
GPC1-208ENST00000469694 DDRGK1Q96HY6 314 aa18.16■□□□□ 0.5
GPC1-208ENST00000469694 NFKBIBQ15653 356 aa18.15■□□□□ 0.5
GPC1-208ENST00000469694 NSD3Q9BZ95 1437 aa18.15■□□□□ 0.5
GPC1-208ENST00000469694 PTPRMP28827 1452 aa18.14■□□□□ 0.5
GPC1-208ENST00000469694 ADAMTS8Q9UP79 889 aa18.14■□□□□ 0.49
GPC1-208ENST00000469694 FRAT1Q92837 279 aaPredicted RBP18.13■□□□□ 0.49
GPC1-208ENST00000469694 PLEKHH1Q9ULM0 1364 aa18.12■□□□□ 0.49
GPC1-208ENST00000469694 METP08581 1390 aa18.11■□□□□ 0.49
GPC1-208ENST00000469694 TXNDC2Q86VQ3 553 aa18.09■□□□□ 0.49
GPC1-208ENST00000469694 RSPH6AQ9H0K4 717 aa18.09■□□□□ 0.49
GPC1-208ENST00000469694 NPC1L1Q9UHC9 1359 aa18.09■□□□□ 0.49
GPC1-208ENST00000469694 RCAN3Q9UKA8 241 aa18.09■□□□□ 0.49
GPC1-208ENST00000469694 LTKP29376 864 aa18.08■□□□□ 0.48
GPC1-208ENST00000469694 WDR43Q15061 677 aaKnown RBP eCLIP18.08■□□□□ 0.48
GPC1-208ENST00000469694 CDK19Q9BWU1 502 aa18.08■□□□□ 0.48
GPC1-208ENST00000469694 MORC1Q86VD1 984 aa18.07■□□□□ 0.48
GPC1-208ENST00000469694 CDCA7LQ96GN5 454 aa18.07■□□□□ 0.48
GPC1-208ENST00000469694 TMEM2Q9UHN6 1383 aa18.07■□□□□ 0.48
GPC1-208ENST00000469694 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.06■□□□□ 0.48
GPC1-208ENST00000469694 CCDC146Q8IYE0 955 aa18.06■□□□□ 0.48
GPC1-208ENST00000469694 FAM43AQ8N2R8 423 aa18.05■□□□□ 0.48
GPC1-208ENST00000469694 A0A1W2PP64 1363 aa18.04■□□□□ 0.48
GPC1-208ENST00000469694 NRXN3Q9Y4C0 1643 aa18.04■□□□□ 0.48
GPC1-208ENST00000469694 SLC26A8Q96RN1 970 aa18.04■□□□□ 0.48
GPC1-208ENST00000469694 ANKRD36BQ8N2N9 1353 aa18.04■□□□□ 0.48
GPC1-208ENST00000469694 CABP1Q9NZU7 370 aa18.04■□□□□ 0.48
GPC1-208ENST00000469694 CGNL1Q0VF96 1302 aa18.03■□□□□ 0.48
GPC1-208ENST00000469694 BLMP54132 1417 aaPredicted RBP18.02■□□□□ 0.48
GPC1-208ENST00000469694 GGNBP2Q9H3C7 697 aa18.02■□□□□ 0.48
GPC1-208ENST00000469694 SLC4A3P48751 1232 aa18.01■□□□□ 0.47
GPC1-208ENST00000469694 NCKAP5LQ9HCH0 1330 aa18.01■□□□□ 0.47
GPC1-208ENST00000469694 SETD1AO15047 1707 aaKnown RBP18.01■□□□□ 0.47
GPC1-208ENST00000469694 UBR1Q8IWV7 1749 aa18.01■□□□□ 0.47
GPC1-208ENST00000469694 HDGFP51858 240 aaKnown RBP18.01■□□□□ 0.47
GPC1-208ENST00000469694 PUS7Q96PZ0 661 aaKnown RBP18.01■□□□□ 0.47
GPC1-208ENST00000469694 ABCC11Q96J66 1382 aa18■□□□□ 0.47
GPC1-208ENST00000469694 PLIN1O60240 522 aa18■□□□□ 0.47
GPC1-208ENST00000469694 C3P01024 1663 aa17.99■□□□□ 0.47
GPC1-208ENST00000469694 MTHFSP49914 203 aa17.99■□□□□ 0.47
GPC1-208ENST00000469694 PDE3BQ13370 1112 aa17.98■□□□□ 0.47
GPC1-208ENST00000469694 DAXXQ9UER7 740 aaPredicted RBP17.98■□□□□ 0.47
GPC1-208ENST00000469694 ATAD2Q6PL18 1390 aa17.98■□□□□ 0.47
GPC1-208ENST00000469694 SKAP1Q86WV1 359 aa17.97■□□□□ 0.47
GPC1-208ENST00000469694 NUTM2FA1L443 756 aa17.97■□□□□ 0.47
GPC1-208ENST00000469694 CD163L1Q9NR16 1453 aa17.97■□□□□ 0.47
GPC1-208ENST00000469694 ADAMTS13Q76LX8 1427 aa17.97■□□□□ 0.47
GPC1-208ENST00000469694 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.97■□□□□ 0.47
GPC1-208ENST00000469694 DNAJC5Q9H3Z4 198 aa17.97■□□□□ 0.47
GPC1-208ENST00000469694 TERF2IPQ9NYB0 399 aa17.97■□□□□ 0.47
GPC1-208ENST00000469694 FER1L4A9Z1Z3 1794 aa17.96■□□□□ 0.47
GPC1-208ENST00000469694 APAF1O14727 1248 aa17.96■□□□□ 0.47
GPC1-208ENST00000469694 NLRP1Q9C000 1473 aa17.96■□□□□ 0.46
GPC1-208ENST00000469694 ROBO2Q9HCK4 1378 aa17.95■□□□□ 0.46
GPC1-208ENST00000469694 FYB1O15117 783 aa17.95■□□□□ 0.46
GPC1-208ENST00000469694 FBLN1P23142 703 aa17.95■□□□□ 0.46
GPC1-208ENST00000469694 WASLO00401 505 aaPredicted RBP17.94■□□□□ 0.46
GPC1-208ENST00000469694 FRAT2O75474 233 aaPredicted RBP17.94■□□□□ 0.46
GPC1-208ENST00000469694 EID1Q9Y6B2 187 aa17.94■□□□□ 0.46
GPC1-208ENST00000469694 DLC1Q96QB1 1528 aa17.93■□□□□ 0.46
GPC1-208ENST00000469694 HDGFL2Q7Z4V5 671 aaPredicted RBP17.93■□□□□ 0.46
GPC1-208ENST00000469694 POLR3AO14802 1390 aaPredicted RBP17.91■□□□□ 0.46
GPC1-208ENST00000469694 PLEKHG1Q9ULL1 1385 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms