RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 TBX22Q9Y458 520 aa8.42□□□□□ -1.06
PTPN4-209ENST00000469511 MYOM3Q5VTT5 1437 aa8.42□□□□□ -1.06
PTPN4-209ENST00000469511 ASXL1Q8IXJ9 1541 aa8.41□□□□□ -1.06
PTPN4-209ENST00000469511 ADAMTS2O95450 1211 aa8.41□□□□□ -1.06
PTPN4-209ENST00000469511 ATF3P18847 181 aa8.41□□□□□ -1.06
PTPN4-209ENST00000469511 NUBP1P53384 320 aa8.41□□□□□ -1.06
PTPN4-209ENST00000469511 CADPS2Q86UW7 1296 aa8.41□□□□□ -1.06
PTPN4-209ENST00000469511 PTPN23Q9H3S7 1636 aa8.4□□□□□ -1.06
PTPN4-209ENST00000469511 DAPK1P53355 1430 aa8.4□□□□□ -1.06
PTPN4-209ENST00000469511 MST1RQ04912 1400 aa8.4□□□□□ -1.06
PTPN4-209ENST00000469511 SETD5Q9C0A6 1442 aa8.4□□□□□ -1.06
PTPN4-209ENST00000469511 NCOA3Q9Y6Q9 1424 aa8.4□□□□□ -1.06
PTPN4-209ENST00000469511 KANK1Q14678 1352 aa8.4□□□□□ -1.06
PTPN4-209ENST00000469511 PNPLA6Q8IY17 1366 aa8.4□□□□□ -1.06
PTPN4-209ENST00000469511 PPP1R15AO75807 674 aaPredicted RBP8.4□□□□□ -1.06
PTPN4-209ENST00000469511 CIZ1Q9ULV3 898 aaPredicted RBP8.4□□□□□ -1.06
PTPN4-209ENST00000469511 AMOTL2Q9Y2J4 779 aa8.4□□□□□ -1.06
PTPN4-209ENST00000469511 CHGAP10645 457 aaKnown RBP8.39□□□□□ -1.07
PTPN4-209ENST00000469511 GSE1Q14687 1217 aa8.39□□□□□ -1.07
PTPN4-209ENST00000469511 SLC52A1Q9NWF4 448 aa8.39□□□□□ -1.07
PTPN4-209ENST00000469511 NRXN3Q9Y4C0 1643 aa8.39□□□□□ -1.07
PTPN4-209ENST00000469511 NGLY1Q96IV0 654 aa8.38□□□□□ -1.07
PTPN4-209ENST00000469511 ZRANB1Q9UGI0 708 aa8.38□□□□□ -1.07
PTPN4-209ENST00000469511 XRN1Q8IZH2 1706 aaKnown RBP8.37□□□□□ -1.07
PTPN4-209ENST00000469511 UNC13BO14795 1591 aa8.37□□□□□ -1.07
PTPN4-209ENST00000469511 RGL2O15211 777 aa8.37□□□□□ -1.07
PTPN4-209ENST00000469511 LRRC59Q96AG4 307 aaKnown RBP8.37□□□□□ -1.07
PTPN4-209ENST00000469511 BRWD3Q6RI45 1802 aa8.37□□□□□ -1.07
PTPN4-209ENST00000469511 NALCNQ8IZF0 1738 aa8.37□□□□□ -1.07
PTPN4-209ENST00000469511 E9PCH4 1651 aa8.37□□□□□ -1.07
PTPN4-209ENST00000469511 ATAD2Q6PL18 1390 aa8.36□□□□□ -1.07
PTPN4-209ENST00000469511 TRPM2O94759 1503 aa8.36□□□□□ -1.07
PTPN4-209ENST00000469511 USP21Q9UK80 565 aa8.36□□□□□ -1.07
PTPN4-209ENST00000469511 LOC105371045A0A1W2PR82 267 aa8.35□□□□□ -1.07
PTPN4-209ENST00000469511 DEFB132Q7Z7B7 95 aa8.35□□□□□ -1.07
PTPN4-209ENST00000469511 VPS8Q8N3P4 1428 aa8.35□□□□□ -1.07
PTPN4-209ENST00000469511 METP08581 1390 aa8.35□□□□□ -1.07
PTPN4-209ENST00000469511 PLCB2Q00722 1185 aa8.34□□□□□ -1.07
PTPN4-209ENST00000469511 ORAI2Q96SN7 254 aa8.34□□□□□ -1.07
PTPN4-209ENST00000469511 ATRNO75882 1429 aa8.34□□□□□ -1.07
PTPN4-209ENST00000469511 MARF1Q9Y4F3 1742 aaKnown RBP8.34□□□□□ -1.07
PTPN4-209ENST00000469511 PIK3R4Q99570 1358 aa8.34□□□□□ -1.07
PTPN4-209ENST00000469511 ANKRD30AQ9BXX3 1397 aa8.34□□□□□ -1.07
PTPN4-209ENST00000469511 FAM212AQ96EL1 285 aa8.33□□□□□ -1.08
PTPN4-209ENST00000469511 RPRD2Q5VT52 1461 aaKnown RBP8.32□□□□□ -1.08
PTPN4-209ENST00000469511 BCL9LQ86UU0 1499 aa8.32□□□□□ -1.08
PTPN4-209ENST00000469511 DCCP43146 1447 aa8.32□□□□□ -1.08
PTPN4-209ENST00000469511 EP400Q96L91 3159 aa8.32□□□□□ -1.08
PTPN4-209ENST00000469511 HDGFP51858 240 aaKnown RBP8.32□□□□□ -1.08
PTPN4-209ENST00000469511 FNBP4Q8N3X1 1017 aaPredicted RBP8.32□□□□□ -1.08
PTPN4-209ENST00000469511 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.32□□□□□ -1.08
PTPN4-209ENST00000469511 TRPC5Q9UL62 973 aaPredicted RBP8.32□□□□□ -1.08
PTPN4-209ENST00000469511 LAMC1P11047 1609 aa8.32□□□□□ -1.08
PTPN4-209ENST00000469511 C1orf167Q5SNV9 1468 aa8.32□□□□□ -1.08
PTPN4-209ENST00000469511 DCAF8Q5TAQ9 597 aa8.31□□□□□ -1.08
PTPN4-209ENST00000469511 GLI3P10071 1580 aa8.31□□□□□ -1.08
PTPN4-209ENST00000469511 SOS2Q07890 1332 aaPredicted RBP8.3□□□□□ -1.08
PTPN4-209ENST00000469511 ADGRL3Q9HAR2 1447 aa8.3□□□□□ -1.08
PTPN4-209ENST00000469511 COL22A1Q8NFW1 1626 aaPredicted RBP8.3□□□□□ -1.08
PTPN4-209ENST00000469511 PSDA5PKW4 1024 aaPredicted RBP8.3□□□□□ -1.08
PTPN4-209ENST00000469511 BBXQ8WY36 941 aaPredicted RBP8.3□□□□□ -1.08
PTPN4-209ENST00000469511 ADGRL2O95490 1459 aa8.3□□□□□ -1.08
PTPN4-209ENST00000469511 ANKRD50Q9ULJ7 1429 aa8.29□□□□□ -1.08
PTPN4-209ENST00000469511 LRP5O75197 1615 aa8.29□□□□□ -1.08
PTPN4-209ENST00000469511 CHRM1P11229 460 aaPredicted RBP8.29□□□□□ -1.08
PTPN4-209ENST00000469511 XPCQ01831 940 aaPredicted RBP8.29□□□□□ -1.08
PTPN4-209ENST00000469511 RASEFQ8IZ41 740 aa8.29□□□□□ -1.08
PTPN4-209ENST00000469511 GJD4Q96KN9 370 aaPredicted RBP8.28□□□□□ -1.08
PTPN4-209ENST00000469511 PTCH1Q13635 1447 aa8.28□□□□□ -1.08
PTPN4-209ENST00000469511 MYOM2P54296 1465 aa8.27□□□□□ -1.09
PTPN4-209ENST00000469511 FXR2P51116 673 aaKnown RBP eCLIP8.27□□□□□ -1.09
PTPN4-209ENST00000469511 CHADLQ6NUI6 762 aa8.27□□□□□ -1.09
PTPN4-209ENST00000469511 CCDC125Q86Z20 511 aa8.27□□□□□ -1.09
PTPN4-209ENST00000469511 RNF25Q96BH1 459 aaPredicted RBP8.27□□□□□ -1.09
PTPN4-209ENST00000469511 IQGAP3Q86VI3 1631 aa8.26□□□□□ -1.09
PTPN4-209ENST00000469511 ROBO2Q9HCK4 1378 aa8.26□□□□□ -1.09
PTPN4-209ENST00000469511 FAM50AQ14320 339 aaKnown RBP8.26□□□□□ -1.09
PTPN4-209ENST00000469511 FARP1Q9Y4F1 1045 aaPredicted RBP8.26□□□□□ -1.09
PTPN4-209ENST00000469511 BLMP54132 1417 aaPredicted RBP8.26□□□□□ -1.09
PTPN4-209ENST00000469511 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.26□□□□□ -1.09
PTPN4-209ENST00000469511 RALGAPBQ86X10 1494 aa8.26□□□□□ -1.09
PTPN4-209ENST00000469511 HRCP23327 699 aa8.25□□□□□ -1.09
PTPN4-209ENST00000469511 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.25□□□□□ -1.09
PTPN4-209ENST00000469511 SPHKAPQ2M3C7 1700 aa8.25□□□□□ -1.09
PTPN4-209ENST00000469511 PXDNQ92626 1479 aa8.25□□□□□ -1.09
PTPN4-209ENST00000469511 NEXMIFQ5QGS0 1516 aa8.24□□□□□ -1.09
PTPN4-209ENST00000469511 ZNF326Q5BKZ1 582 aaKnown RBP8.24□□□□□ -1.09
PTPN4-209ENST00000469511 RGPD8O14715 1765 aaPredicted RBP8.24□□□□□ -1.09
PTPN4-209ENST00000469511 SLIT2O94813 1529 aa8.24□□□□□ -1.09
PTPN4-209ENST00000469511 CLTCL1P53675 1640 aa8.23□□□□□ -1.09
PTPN4-209ENST00000469511 NUTM2FA1L443 756 aa8.23□□□□□ -1.09
PTPN4-209ENST00000469511 RIOK3O14730 519 aaKnown RBP8.23□□□□□ -1.09
PTPN4-209ENST00000469511 FOXO3O43524 673 aa8.23□□□□□ -1.09
PTPN4-209ENST00000469511 PRKAR2AP13861 404 aaKnown RBP8.23□□□□□ -1.09
PTPN4-209ENST00000469511 CHRDL2Q6WN34 429 aa8.23□□□□□ -1.09
PTPN4-209ENST00000469511 SEPT12Q8IYM1 358 aa8.23□□□□□ -1.09
PTPN4-209ENST00000469511 HS6ST3Q8IZP7 471 aa8.23□□□□□ -1.09
PTPN4-209ENST00000469511 TAOK2Q9UL54 1235 aa8.23□□□□□ -1.09
PTPN4-209ENST00000469511 ESCO1Q5FWF5 840 aa8.22□□□□□ -1.09
PTPN4-209ENST00000469511 FAM182BQ5T319 152 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms