RNA–Protein interactions for RNA: ENST00000469504.1

COL4A3-204, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL4A3, Length 521 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-204ENST00000469504 SIRT1Q96EB6 747 aa16.22■□□□□ 0.19
COL4A3-204ENST00000469504 NUTM2BA6NNL0 878 aaPredicted RBP16.21■□□□□ 0.19
COL4A3-204ENST00000469504 NUTM2EB1AL46 878 aaPredicted RBP16.21■□□□□ 0.19
COL4A3-204ENST00000469504 NUTM2AQ8IVF1 878 aaPredicted RBP16.21■□□□□ 0.19
COL4A3-204ENST00000469504 MYOM2P54296 1465 aa16.21■□□□□ 0.19
COL4A3-204ENST00000469504 CDK12Q9NYV4 1490 aaPredicted RBP16.21■□□□□ 0.19
COL4A3-204ENST00000469504 NPHP3Q7Z494 1330 aa16.2■□□□□ 0.18
COL4A3-204ENST00000469504 HRCP23327 699 aa16.2■□□□□ 0.18
COL4A3-204ENST00000469504 ORAI2Q96SN7 254 aa16.2■□□□□ 0.18
COL4A3-204ENST00000469504 RAB3GAP2Q9H2M9 1393 aa16.2■□□□□ 0.18
COL4A3-204ENST00000469504 NRXN1Q9ULB1 1477 aa16.2■□□□□ 0.18
COL4A3-204ENST00000469504 KNDC1Q76NI1 1749 aa16.19■□□□□ 0.18
COL4A3-204ENST00000469504 RXRBP28702 533 aa16.19■□□□□ 0.18
COL4A3-204ENST00000469504 C14orf93Q9H972 538 aaKnown RBP16.19■□□□□ 0.18
COL4A3-204ENST00000469504 YTHDC2Q9H6S0 1430 aaKnown RBP16.19■□□□□ 0.18
COL4A3-204ENST00000469504 DDX17Q92841 729 aaKnown RBP16.18■□□□□ 0.18
COL4A3-204ENST00000469504 STAC3Q96MF2 364 aa16.18■□□□□ 0.18
COL4A3-204ENST00000469504 AFF2P51816 1311 aa16.18■□□□□ 0.18
COL4A3-204ENST00000469504 ESCO1Q5FWF5 840 aa16.17■□□□□ 0.18
COL4A3-204ENST00000469504 DHX57Q6P158 1386 aaKnown RBP16.16■□□□□ 0.18
COL4A3-204ENST00000469504 STK26Q9P289 416 aa16.16■□□□□ 0.18
COL4A3-204ENST00000469504 TMEM132EQ6IEE7 984 aa16.15■□□□□ 0.18
COL4A3-204ENST00000469504 WAPLQ7Z5K2 1190 aa16.15■□□□□ 0.18
COL4A3-204ENST00000469504 C8orf37Q96NL8 207 aa16.14■□□□□ 0.17
COL4A3-204ENST00000469504 COL22A1Q8NFW1 1626 aaPredicted RBP16.13■□□□□ 0.17
COL4A3-204ENST00000469504 RBM6P78332 1123 aaKnown RBP16.13■□□□□ 0.17
COL4A3-204ENST00000469504 PXDNQ92626 1479 aa16.12■□□□□ 0.17
COL4A3-204ENST00000469504 MAPK8IP2Q13387 824 aaPredicted RBP16.12■□□□□ 0.17
COL4A3-204ENST00000469504 NGLY1Q96IV0 654 aa16.12■□□□□ 0.17
COL4A3-204ENST00000469504 DLC1Q96QB1 1528 aa16.11■□□□□ 0.17
COL4A3-204ENST00000469504 QTRT2Q9H974 415 aaKnown RBP16.11■□□□□ 0.17
COL4A3-204ENST00000469504 PLEKHH1Q9ULM0 1364 aa16.11■□□□□ 0.17
COL4A3-204ENST00000469504 FOXO3O43524 673 aa16.1■□□□□ 0.17
COL4A3-204ENST00000469504 CFAP70Q5T0N1 1121 aa16.1■□□□□ 0.17
COL4A3-204ENST00000469504 FNBP4Q8N3X1 1017 aaPredicted RBP16.1■□□□□ 0.17
COL4A3-204ENST00000469504 KIF1AQ12756 1690 aa16.1■□□□□ 0.17
COL4A3-204ENST00000469504 FMN2Q9NZ56 1722 aa16.09■□□□□ 0.17
COL4A3-204ENST00000469504 ADAMTS2O95450 1211 aa16.09■□□□□ 0.17
COL4A3-204ENST00000469504 TRPC5Q9UL62 973 aaPredicted RBP16.08■□□□□ 0.16
COL4A3-204ENST00000469504 UPF1Q92900 1129 aaKnown RBP eCLIP16.07■□□□□ 0.16
COL4A3-204ENST00000469504 USP21Q9UK80 565 aa16.07■□□□□ 0.16
COL4A3-204ENST00000469504 ANKARQ7Z5J8 1434 aa16.06■□□□□ 0.16
COL4A3-204ENST00000469504 EIF3AQ14152 1382 aaKnown RBP16.06■□□□□ 0.16
COL4A3-204ENST00000469504 PSME1Q06323 249 aa16.06■□□□□ 0.16
COL4A3-204ENST00000469504 PRAM1Q96QH2 718 aa16.06■□□□□ 0.16
COL4A3-204ENST00000469504 ADGRB1O14514 1584 aa16.05■□□□□ 0.16
COL4A3-204ENST00000469504 SPATA31A3Q5VYP0 1347 aa16.05■□□□□ 0.16
COL4A3-204ENST00000469504 POGKQ9P215 609 aa16.05■□□□□ 0.16
COL4A3-204ENST00000469504 ADGRB2O60241 1585 aa16.04■□□□□ 0.16
COL4A3-204ENST00000469504 RGS12O14924 1447 aa16.04■□□□□ 0.16
COL4A3-204ENST00000469504 NUTM2FA1L443 756 aa16.04■□□□□ 0.16
COL4A3-204ENST00000469504 PHF8Q9UPP1 1060 aa16.04■□□□□ 0.16
COL4A3-204ENST00000469504 DCAF11Q8TEB1 546 aa16.03■□□□□ 0.16
COL4A3-204ENST00000469504 ATRNO75882 1429 aa16.02■□□□□ 0.16
COL4A3-204ENST00000469504 SBNO1A3KN83 1393 aa16.02■□□□□ 0.16
COL4A3-204ENST00000469504 XPCQ01831 940 aaPredicted RBP16.02■□□□□ 0.16
COL4A3-204ENST00000469504 KRT28Q7Z3Y7 464 aa16.02■□□□□ 0.16
COL4A3-204ENST00000469504 TNS3Q68CZ2 1445 aa16.02■□□□□ 0.15
COL4A3-204ENST00000469504 ARHGEF10O15013 1369 aa16.01■□□□□ 0.15
COL4A3-204ENST00000469504 ATAD2Q6PL18 1390 aa16■□□□□ 0.15
COL4A3-204ENST00000469504 BCL9LQ86UU0 1499 aa15.99■□□□□ 0.15
COL4A3-204ENST00000469504 TRAK1Q9UPV9 953 aa15.99■□□□□ 0.15
COL4A3-204ENST00000469504 KDM2AQ9Y2K7 1162 aa15.99■□□□□ 0.15
COL4A3-204ENST00000469504 SAFB2Q14151 953 aaKnown RBP eCLIP15.98■□□□□ 0.15
COL4A3-204ENST00000469504 MARF1Q9Y4F3 1742 aaKnown RBP15.98■□□□□ 0.15
COL4A3-204ENST00000469504 SLIT2O94813 1529 aa15.97■□□□□ 0.15
COL4A3-204ENST00000469504 TULP4Q9NRJ4 1543 aa15.96■□□□□ 0.15
COL4A3-204ENST00000469504 WASLO00401 505 aaPredicted RBP15.96■□□□□ 0.15
COL4A3-204ENST00000469504 UNC5CLQ8IV45 518 aa15.96■□□□□ 0.15
COL4A3-204ENST00000469504 GJD4Q96KN9 370 aaPredicted RBP15.96■□□□□ 0.15
COL4A3-204ENST00000469504 USP32Q8NFA0 1604 aa15.96■□□□□ 0.15
COL4A3-204ENST00000469504 GPRASP1Q5JY77 1395 aa15.96■□□□□ 0.15
COL4A3-204ENST00000469504 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.96■□□□□ 0.15
COL4A3-204ENST00000469504 HAP1P54257 671 aaPredicted RBP15.95■□□□□ 0.14
COL4A3-204ENST00000469504 MINK1Q8N4C8 1332 aaPredicted RBP15.93■□□□□ 0.14
COL4A3-204ENST00000469504 CCDC125Q86Z20 511 aa15.92■□□□□ 0.14
COL4A3-204ENST00000469504 PMFBP1Q8TBY8 1022 aa15.92■□□□□ 0.14
COL4A3-204ENST00000469504 HIRIP3Q9BW71 556 aaPredicted RBP15.92■□□□□ 0.14
COL4A3-204ENST00000469504 RGPD8O14715 1765 aaPredicted RBP15.92■□□□□ 0.14
COL4A3-204ENST00000469504 KIAA1210Q9ULL0 1709 aa15.91■□□□□ 0.14
COL4A3-204ENST00000469504 VPS72Q15906 364 aa15.9■□□□□ 0.14
COL4A3-204ENST00000469504 LMOD2Q6P5Q4 547 aa15.9■□□□□ 0.14
COL4A3-204ENST00000469504 PRR36Q9H6K5 1346 aa15.9■□□□□ 0.14
COL4A3-204ENST00000469504 ARHGEF28Q8N1W1 1705 aaKnown RBP15.89■□□□□ 0.13
COL4A3-204ENST00000469504 NGDNQ8NEJ9 315 aaKnown RBP15.89■□□□□ 0.13
COL4A3-204ENST00000469504 RALGAPBQ86X10 1494 aa15.89■□□□□ 0.13
COL4A3-204ENST00000469504 NWD2Q9ULI1 1742 aa15.88■□□□□ 0.13
COL4A3-204ENST00000469504 ATP7BP35670 1465 aa15.88■□□□□ 0.13
COL4A3-204ENST00000469504 CABLES1Q8TDN4 633 aa15.87■□□□□ 0.13
COL4A3-204ENST00000469504 TRPM3Q9HCF6 1732 aaPredicted RBP15.87■□□□□ 0.13
COL4A3-204ENST00000469504 ITSN1Q15811 1721 aa15.86■□□□□ 0.13
COL4A3-204ENST00000469504 ABCA3Q99758 1704 aa15.86■□□□□ 0.13
COL4A3-204ENST00000469504 ONECUT3O60422 494 aaPredicted RBP15.86■□□□□ 0.13
COL4A3-204ENST00000469504 NUDT16Q96DE0 195 aaKnown RBP15.86■□□□□ 0.13
COL4A3-204ENST00000469504 GLI3P10071 1580 aa15.86■□□□□ 0.13
COL4A3-204ENST00000469504 ALS2Q96Q42 1657 aa15.86■□□□□ 0.13
COL4A3-204ENST00000469504 PPP4R3CPQ6ZMV5 832 aa15.85■□□□□ 0.13
COL4A3-204ENST00000469504 CCDC61Q9Y6R9 512 aa15.85■□□□□ 0.13
COL4A3-204ENST00000469504 CDK19Q9BWU1 502 aa15.84■□□□□ 0.13
COL4A3-204ENST00000469504 POLR3AO14802 1390 aaPredicted RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms