RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 MPHOSPH9Q99550 1183 aa18.39■□□□□ 0.53
HDAC3-204ENST00000469207 PPLO60437 1756 aa18.39■□□□□ 0.53
HDAC3-204ENST00000469207 RBM6P78332 1123 aaKnown RBP18.38■□□□□ 0.53
HDAC3-204ENST00000469207 FOXO3O43524 673 aa18.36■□□□□ 0.53
HDAC3-204ENST00000469207 RGS12O14924 1447 aa18.35■□□□□ 0.53
HDAC3-204ENST00000469207 USP21Q9UK80 565 aa18.35■□□□□ 0.53
HDAC3-204ENST00000469207 PLEKHH1Q9ULM0 1364 aa18.34■□□□□ 0.53
HDAC3-204ENST00000469207 CDK12Q9NYV4 1490 aaPredicted RBP18.33■□□□□ 0.53
HDAC3-204ENST00000469207 CCDC144AA2RUR9 1427 aa18.33■□□□□ 0.53
HDAC3-204ENST00000469207 SPATA31E1Q6ZUB1 1445 aa18.32■□□□□ 0.52
HDAC3-204ENST00000469207 PRAG1Q86YV5 1406 aa18.32■□□□□ 0.52
HDAC3-204ENST00000469207 LAMC1P11047 1609 aa18.31■□□□□ 0.52
HDAC3-204ENST00000469207 FNBP4Q8N3X1 1017 aaPredicted RBP18.3■□□□□ 0.52
HDAC3-204ENST00000469207 NPHP3Q7Z494 1330 aa18.29■□□□□ 0.52
HDAC3-204ENST00000469207 LRPPRCP42704 1394 aaKnown RBP18.29■□□□□ 0.52
HDAC3-204ENST00000469207 TRPC5Q9UL62 973 aaPredicted RBP18.28■□□□□ 0.52
HDAC3-204ENST00000469207 PXDNQ92626 1479 aa18.27■□□□□ 0.52
HDAC3-204ENST00000469207 CFAP70Q5T0N1 1121 aa18.27■□□□□ 0.52
HDAC3-204ENST00000469207 ABCC11Q96J66 1382 aa18.27■□□□□ 0.51
HDAC3-204ENST00000469207 ANKRD30BQ9BXX2 1392 aa18.27■□□□□ 0.51
HDAC3-204ENST00000469207 TECPR2O15040 1411 aa18.25■□□□□ 0.51
HDAC3-204ENST00000469207 PLEKHG5O94827 1062 aa18.25■□□□□ 0.51
HDAC3-204ENST00000469207 CDC42BPGQ6DT37 1551 aa18.25■□□□□ 0.51
HDAC3-204ENST00000469207 PIK3C2GO75747 1445 aa18.24■□□□□ 0.51
HDAC3-204ENST00000469207 SAFB2Q14151 953 aaKnown RBP eCLIP18.24■□□□□ 0.51
HDAC3-204ENST00000469207 C14orf93Q9H972 538 aaKnown RBP18.24■□□□□ 0.51
HDAC3-204ENST00000469207 MYOM2P54296 1465 aa18.24■□□□□ 0.51
HDAC3-204ENST00000469207 YTHDC2Q9H6S0 1430 aaKnown RBP18.23■□□□□ 0.51
HDAC3-204ENST00000469207 IFT172Q9UG01 1749 aa18.23■□□□□ 0.51
HDAC3-204ENST00000469207 BCL9LQ86UU0 1499 aa18.23■□□□□ 0.51
HDAC3-204ENST00000469207 KRT28Q7Z3Y7 464 aa18.23■□□□□ 0.51
HDAC3-204ENST00000469207 COL22A1Q8NFW1 1626 aaPredicted RBP18.23■□□□□ 0.51
HDAC3-204ENST00000469207 ATRNO75882 1429 aa18.23■□□□□ 0.51
HDAC3-204ENST00000469207 SPATA31A3Q5VYP0 1347 aa18.21■□□□□ 0.51
HDAC3-204ENST00000469207 CABLES1Q8TDN4 633 aa18.2■□□□□ 0.5
HDAC3-204ENST00000469207 GJD4Q96KN9 370 aaPredicted RBP18.2■□□□□ 0.5
HDAC3-204ENST00000469207 PRAM1Q96QH2 718 aa18.19■□□□□ 0.5
HDAC3-204ENST00000469207 SIRT1Q96EB6 747 aa18.18■□□□□ 0.5
HDAC3-204ENST00000469207 PHF8Q9UPP1 1060 aa18.18■□□□□ 0.5
HDAC3-204ENST00000469207 ATAD2Q6PL18 1390 aa18.17■□□□□ 0.5
HDAC3-204ENST00000469207 FMN2Q9NZ56 1722 aa18.17■□□□□ 0.5
HDAC3-204ENST00000469207 RGPD8O14715 1765 aaPredicted RBP18.17■□□□□ 0.5
HDAC3-204ENST00000469207 DHX57Q6P158 1386 aaKnown RBP18.17■□□□□ 0.5
HDAC3-204ENST00000469207 KNDC1Q76NI1 1749 aa18.16■□□□□ 0.5
HDAC3-204ENST00000469207 LMOD2Q6P5Q4 547 aa18.16■□□□□ 0.5
HDAC3-204ENST00000469207 UNC5CLQ8IV45 518 aa18.16■□□□□ 0.5
HDAC3-204ENST00000469207 PMFBP1Q8TBY8 1022 aa18.16■□□□□ 0.5
HDAC3-204ENST00000469207 KDM2AQ9Y2K7 1162 aa18.15■□□□□ 0.5
HDAC3-204ENST00000469207 RAB3GAP2Q9H2M9 1393 aa18.15■□□□□ 0.5
HDAC3-204ENST00000469207 HIRIP3Q9BW71 556 aaPredicted RBP18.14■□□□□ 0.49
HDAC3-204ENST00000469207 POGKQ9P215 609 aa18.14■□□□□ 0.49
HDAC3-204ENST00000469207 MARF1Q9Y4F3 1742 aaKnown RBP18.14■□□□□ 0.49
HDAC3-204ENST00000469207 NRXN1Q9ULB1 1477 aa18.14■□□□□ 0.49
HDAC3-204ENST00000469207 PSME1Q06323 249 aa18.13■□□□□ 0.49
HDAC3-204ENST00000469207 TRAK1Q9UPV9 953 aa18.13■□□□□ 0.49
HDAC3-204ENST00000469207 HAP1P54257 671 aaPredicted RBP18.12■□□□□ 0.49
HDAC3-204ENST00000469207 SLIT2O94813 1529 aa18.12■□□□□ 0.49
HDAC3-204ENST00000469207 EP400Q96L91 3159 aa18.1■□□□□ 0.49
HDAC3-204ENST00000469207 RALGAPBQ86X10 1494 aa18.1■□□□□ 0.49
HDAC3-204ENST00000469207 DCAF11Q8TEB1 546 aa18.1■□□□□ 0.49
HDAC3-204ENST00000469207 TNS3Q68CZ2 1445 aa18.09■□□□□ 0.49
HDAC3-204ENST00000469207 SRCAPQ6ZRS2 3230 aa18.09■□□□□ 0.49
HDAC3-204ENST00000469207 MINK1Q8N4C8 1332 aaPredicted RBP18.09■□□□□ 0.49
HDAC3-204ENST00000469207 FAM83GA6ND36 823 aa18.09■□□□□ 0.49
HDAC3-204ENST00000469207 KIF1AQ12756 1690 aa18.09■□□□□ 0.49
HDAC3-204ENST00000469207 GLI3P10071 1580 aa18.08■□□□□ 0.49
HDAC3-204ENST00000469207 PRR36Q9H6K5 1346 aa18.07■□□□□ 0.48
HDAC3-204ENST00000469207 SEPT12Q8IYM1 358 aa18.07■□□□□ 0.48
HDAC3-204ENST00000469207 CCDC9Q9Y3X0 531 aaKnown RBP18.07■□□□□ 0.48
HDAC3-204ENST00000469207 ZRANB1Q9UGI0 708 aa18.06■□□□□ 0.48
HDAC3-204ENST00000469207 SBNO1A3KN83 1393 aa18.05■□□□□ 0.48
HDAC3-204ENST00000469207 USP32Q8NFA0 1604 aa18.05■□□□□ 0.48
HDAC3-204ENST00000469207 ACIN1Q9UKV3 1341 aaKnown RBP18.05■□□□□ 0.48
HDAC3-204ENST00000469207 VPS72Q15906 364 aa18.05■□□□□ 0.48
HDAC3-204ENST00000469207 DEFB132Q7Z7B7 95 aa18.05■□□□□ 0.48
HDAC3-204ENST00000469207 CCDC125Q86Z20 511 aa18.04■□□□□ 0.48
HDAC3-204ENST00000469207 ADGRB1O14514 1584 aa18.04■□□□□ 0.48
HDAC3-204ENST00000469207 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.03■□□□□ 0.48
HDAC3-204ENST00000469207 DLC1Q96QB1 1528 aa18.03■□□□□ 0.48
HDAC3-204ENST00000469207 BRWD3Q6RI45 1802 aa18.02■□□□□ 0.48
HDAC3-204ENST00000469207 WASLO00401 505 aaPredicted RBP18.02■□□□□ 0.48
HDAC3-204ENST00000469207 ONECUT3O60422 494 aaPredicted RBP18.01■□□□□ 0.47
HDAC3-204ENST00000469207 BTG4Q9NY30 223 aa18.01■□□□□ 0.47
HDAC3-204ENST00000469207 ARHGEF10O15013 1369 aa18.01■□□□□ 0.47
HDAC3-204ENST00000469207 ANKARQ7Z5J8 1434 aa17.99■□□□□ 0.47
HDAC3-204ENST00000469207 PAK3O75914 559 aaPredicted RBP17.99■□□□□ 0.47
HDAC3-204ENST00000469207 KRT27Q7Z3Y8 459 aa17.99■□□□□ 0.47
HDAC3-204ENST00000469207 NGDNQ8NEJ9 315 aaKnown RBP17.99■□□□□ 0.47
HDAC3-204ENST00000469207 A0A0G2JS52 829 aa17.98■□□□□ 0.47
HDAC3-204ENST00000469207 MYT1Q01538 1121 aa17.98■□□□□ 0.47
HDAC3-204ENST00000469207 FAM98CQ17RN3 349 aaKnown RBP17.98■□□□□ 0.47
HDAC3-204ENST00000469207 PLCH1Q4KWH8 1693 aa17.98■□□□□ 0.47
HDAC3-204ENST00000469207 BLMP54132 1417 aaPredicted RBP17.98■□□□□ 0.47
HDAC3-204ENST00000469207 GPRASP1Q5JY77 1395 aa17.97■□□□□ 0.47
HDAC3-204ENST00000469207 FAM182BQ5T319 152 aa17.97■□□□□ 0.47
HDAC3-204ENST00000469207 ABCA3Q99758 1704 aa17.97■□□□□ 0.47
HDAC3-204ENST00000469207 ADGRB2O60241 1585 aa17.96■□□□□ 0.46
HDAC3-204ENST00000469207 TRPM3Q9HCF6 1732 aaPredicted RBP17.95■□□□□ 0.46
HDAC3-204ENST00000469207 NUTM2GQ5VZR2 741 aa17.95■□□□□ 0.46
HDAC3-204ENST00000469207 NUDT16Q96DE0 195 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms