RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 PIK3C2GO75747 1445 aa31.31■■■□□ 2.6
SHANK1-206ENST00000468654 CDK12Q9NYV4 1490 aaPredicted RBP31.3■■■□□ 2.6
SHANK1-206ENST00000468654 LRRC59Q96AG4 307 aaKnown RBP31.29■■■□□ 2.6
SHANK1-206ENST00000468654 RGPD8O14715 1765 aaPredicted RBP31.28■■■□□ 2.6
SHANK1-206ENST00000468654 AFF2P51816 1311 aa31.27■■■□□ 2.6
SHANK1-206ENST00000468654 ORAI2Q96SN7 254 aa31.24■■■□□ 2.59
SHANK1-206ENST00000468654 LRPPRCP42704 1394 aaKnown RBP31.24■■■□□ 2.59
SHANK1-206ENST00000468654 KIF1AQ12756 1690 aa31.23■■■□□ 2.59
SHANK1-206ENST00000468654 PXDNQ92626 1479 aa31.23■■■□□ 2.59
SHANK1-206ENST00000468654 SOS2Q07890 1332 aaPredicted RBP31.23■■■□□ 2.59
SHANK1-206ENST00000468654 MYOM2P54296 1465 aa31.21■■■□□ 2.59
SHANK1-206ENST00000468654 NRXN1Q9ULB1 1477 aa31.21■■■□□ 2.59
SHANK1-206ENST00000468654 RGS12O14924 1447 aa31.21■■■□□ 2.59
SHANK1-206ENST00000468654 ABCC11Q96J66 1382 aa31.19■■■□□ 2.58
SHANK1-206ENST00000468654 C8orf37Q96NL8 207 aa31.18■■■□□ 2.58
SHANK1-206ENST00000468654 RXRBP28702 533 aa31.17■■■□□ 2.58
SHANK1-206ENST00000468654 STK26Q9P289 416 aa31.16■■■□□ 2.58
SHANK1-206ENST00000468654 PLEKHH1Q9ULM0 1364 aa31.16■■■□□ 2.58
SHANK1-206ENST00000468654 YTHDC2Q9H6S0 1430 aaKnown RBP31.15■■■□□ 2.58
SHANK1-206ENST00000468654 TMEM132EQ6IEE7 984 aa31.15■■■□□ 2.58
SHANK1-206ENST00000468654 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.13■■■□□ 2.57
SHANK1-206ENST00000468654 ABCA3Q99758 1704 aa31.12■■■□□ 2.57
SHANK1-206ENST00000468654 WAPLQ7Z5K2 1190 aa31.12■■■□□ 2.57
SHANK1-206ENST00000468654 UPF1Q92900 1129 aaKnown RBP eCLIP31.12■■■□□ 2.57
SHANK1-206ENST00000468654 C14orf93Q9H972 538 aaKnown RBP31.11■■■□□ 2.57
SHANK1-206ENST00000468654 ADAMTS2O95450 1211 aa31.09■■■□□ 2.57
SHANK1-206ENST00000468654 NPHP3Q7Z494 1330 aa31.08■■■□□ 2.57
SHANK1-206ENST00000468654 HRCP23327 699 aa31.08■■■□□ 2.57
SHANK1-206ENST00000468654 USP32Q8NFA0 1604 aa31.06■■■□□ 2.56
SHANK1-206ENST00000468654 ESCO1Q5FWF5 840 aa31.05■■■□□ 2.56
SHANK1-206ENST00000468654 CFAP70Q5T0N1 1121 aa31.05■■■□□ 2.56
SHANK1-206ENST00000468654 SIRT1Q96EB6 747 aa31.05■■■□□ 2.56
SHANK1-206ENST00000468654 ADGRB2O60241 1585 aa31.05■■■□□ 2.56
SHANK1-206ENST00000468654 EP400Q96L91 3159 aa31.03■■■□□ 2.56
SHANK1-206ENST00000468654 QTRT2Q9H974 415 aaKnown RBP31.03■■■□□ 2.56
SHANK1-206ENST00000468654 DHX57Q6P158 1386 aaKnown RBP31.03■■■□□ 2.56
SHANK1-206ENST00000468654 RBM6P78332 1123 aaKnown RBP31.02■■■□□ 2.56
SHANK1-206ENST00000468654 NGLY1Q96IV0 654 aa31.02■■■□□ 2.56
SHANK1-206ENST00000468654 DLC1Q96QB1 1528 aa31.02■■■□□ 2.56
SHANK1-206ENST00000468654 ADGRB1O14514 1584 aa31.01■■■□□ 2.56
SHANK1-206ENST00000468654 ATRNO75882 1429 aa31.01■■■□□ 2.55
SHANK1-206ENST00000468654 PLCH1Q4KWH8 1693 aa31■■■□□ 2.55
SHANK1-206ENST00000468654 NUTM2FA1L443 756 aa31■■■□□ 2.55
SHANK1-206ENST00000468654 XPCQ01831 940 aaPredicted RBP31■■■□□ 2.55
SHANK1-206ENST00000468654 FOXO3O43524 673 aa30.98■■■□□ 2.55
SHANK1-206ENST00000468654 USP21Q9UK80 565 aa30.95■■■□□ 2.55
SHANK1-206ENST00000468654 ARHGEF28Q8N1W1 1705 aaKnown RBP30.95■■■□□ 2.54
SHANK1-206ENST00000468654 TRPM3Q9HCF6 1732 aaPredicted RBP30.95■■■□□ 2.54
SHANK1-206ENST00000468654 BCL9LQ86UU0 1499 aa30.95■■■□□ 2.54
SHANK1-206ENST00000468654 BRWD3Q6RI45 1802 aa30.94■■■□□ 2.54
SHANK1-206ENST00000468654 FNBP4Q8N3X1 1017 aaPredicted RBP30.94■■■□□ 2.54
SHANK1-206ENST00000468654 NWD2Q9ULI1 1742 aa30.93■■■□□ 2.54
SHANK1-206ENST00000468654 PRAM1Q96QH2 718 aa30.92■■■□□ 2.54
SHANK1-206ENST00000468654 GLI3P10071 1580 aa30.92■■■□□ 2.54
SHANK1-206ENST00000468654 TRPC5Q9UL62 973 aaPredicted RBP30.9■■■□□ 2.54
SHANK1-206ENST00000468654 TNS3Q68CZ2 1445 aa30.9■■■□□ 2.54
SHANK1-206ENST00000468654 STAC3Q96MF2 364 aa30.89■■■□□ 2.54
SHANK1-206ENST00000468654 ALS2Q96Q42 1657 aa30.89■■■□□ 2.54
SHANK1-206ENST00000468654 CRYBG1Q9Y4K1 1723 aa30.88■■■□□ 2.53
SHANK1-206ENST00000468654 DCAF11Q8TEB1 546 aa30.88■■■□□ 2.53
SHANK1-206ENST00000468654 SPATA31A3Q5VYP0 1347 aa30.87■■■□□ 2.53
SHANK1-206ENST00000468654 SLIT2O94813 1529 aa30.87■■■□□ 2.53
SHANK1-206ENST00000468654 ITSN1Q15811 1721 aa30.87■■■□□ 2.53
SHANK1-206ENST00000468654 SAFB2Q14151 953 aaKnown RBP eCLIP30.86■■■□□ 2.53
SHANK1-206ENST00000468654 KDM2AQ9Y2K7 1162 aa30.86■■■□□ 2.53
SHANK1-206ENST00000468654 ATAD2Q6PL18 1390 aa30.85■■■□□ 2.53
SHANK1-206ENST00000468654 NRAPQ86VF7 1730 aa30.84■■■□□ 2.53
SHANK1-206ENST00000468654 ANKARQ7Z5J8 1434 aa30.84■■■□□ 2.53
SHANK1-206ENST00000468654 POGKQ9P215 609 aa30.84■■■□□ 2.53
SHANK1-206ENST00000468654 PHF8Q9UPP1 1060 aa30.81■■■□□ 2.52
SHANK1-206ENST00000468654 TRAK1Q9UPV9 953 aa30.81■■■□□ 2.52
SHANK1-206ENST00000468654 TULP4Q9NRJ4 1543 aa30.81■■■□□ 2.52
SHANK1-206ENST00000468654 RALGAPBQ86X10 1494 aa30.79■■■□□ 2.52
SHANK1-206ENST00000468654 KRT28Q7Z3Y7 464 aa30.78■■■□□ 2.52
SHANK1-206ENST00000468654 KIAA1210Q9ULL0 1709 aa30.77■■■□□ 2.52
SHANK1-206ENST00000468654 TOPAZ1Q8N9V7 1692 aa30.76■■■□□ 2.51
SHANK1-206ENST00000468654 SBNO1A3KN83 1393 aa30.76■■■□□ 2.51
SHANK1-206ENST00000468654 EIF3AQ14152 1382 aaKnown RBP30.74■■■□□ 2.51
SHANK1-206ENST00000468654 HIRIP3Q9BW71 556 aaPredicted RBP30.72■■■□□ 2.51
SHANK1-206ENST00000468654 MINK1Q8N4C8 1332 aaPredicted RBP30.72■■■□□ 2.51
SHANK1-206ENST00000468654 ARHGEF10O15013 1369 aa30.71■■■□□ 2.51
SHANK1-206ENST00000468654 PSME1Q06323 249 aa30.71■■■□□ 2.51
SHANK1-206ENST00000468654 GJD4Q96KN9 370 aaPredicted RBP30.71■■■□□ 2.51
SHANK1-206ENST00000468654 COL14A1Q05707 1796 aaKnown RBP30.71■■■□□ 2.51
SHANK1-206ENST00000468654 PHRF1Q9P1Y6 1649 aaKnown RBP30.69■■■□□ 2.5
SHANK1-206ENST00000468654 UNC5CLQ8IV45 518 aa30.68■■■□□ 2.5
SHANK1-206ENST00000468654 PRR36Q9H6K5 1346 aa30.68■■■□□ 2.5
SHANK1-206ENST00000468654 CABLES1Q8TDN4 633 aa30.67■■■□□ 2.5
SHANK1-206ENST00000468654 ATP7BP35670 1465 aa30.67■■■□□ 2.5
SHANK1-206ENST00000468654 WASLO00401 505 aaPredicted RBP30.66■■■□□ 2.5
SHANK1-206ENST00000468654 PMFBP1Q8TBY8 1022 aa30.66■■■□□ 2.5
SHANK1-206ENST00000468654 SRCAPQ6ZRS2 3230 aa30.65■■■□□ 2.5
SHANK1-206ENST00000468654 PLEKHG5O94827 1062 aa30.62■■■□□ 2.49
SHANK1-206ENST00000468654 HAP1P54257 671 aaPredicted RBP30.62■■■□□ 2.49
SHANK1-206ENST00000468654 LMOD2Q6P5Q4 547 aa30.59■■■□□ 2.49
SHANK1-206ENST00000468654 GPRASP1Q5JY77 1395 aa30.58■■■□□ 2.49
SHANK1-206ENST00000468654 QRICH2Q9H0J4 1663 aa30.56■■■□□ 2.48
SHANK1-206ENST00000468654 VPS72Q15906 364 aa30.55■■■□□ 2.48
SHANK1-206ENST00000468654 THSD7AQ9UPZ6 1657 aa30.55■■■□□ 2.48
SHANK1-206ENST00000468654 BLMP54132 1417 aaPredicted RBP30.53■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms