RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 ATF3P18847 181 aa19.76■□□□□ 0.75
SEMA3D-203ENST00000463315 KIAA1210Q9ULL0 1709 aa19.76■□□□□ 0.75
SEMA3D-203ENST00000463315 SLAIN2Q9P270 581 aa19.75■□□□□ 0.75
SEMA3D-203ENST00000463315 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.74■□□□□ 0.75
SEMA3D-203ENST00000463315 DLC1Q96QB1 1528 aa19.74■□□□□ 0.75
SEMA3D-203ENST00000463315 PIP4K2BP78356 416 aa19.73■□□□□ 0.75
SEMA3D-203ENST00000463315 STK26Q9P289 416 aa19.72■□□□□ 0.75
SEMA3D-203ENST00000463315 TONSLQ96HA7 1378 aa19.71■□□□□ 0.75
SEMA3D-203ENST00000463315 RNF39Q9H2S5 420 aa19.7■□□□□ 0.74
SEMA3D-203ENST00000463315 TIMELESSQ9UNS1 1208 aa19.7■□□□□ 0.74
SEMA3D-203ENST00000463315 NALCNQ8IZF0 1738 aa19.68■□□□□ 0.74
SEMA3D-203ENST00000463315 WAPLQ7Z5K2 1190 aa19.67■□□□□ 0.74
SEMA3D-203ENST00000463315 CDC42BPGQ6DT37 1551 aa19.66■□□□□ 0.74
SEMA3D-203ENST00000463315 MST1RQ04912 1400 aa19.66■□□□□ 0.74
SEMA3D-203ENST00000463315 PRAM1Q96QH2 718 aa19.65■□□□□ 0.74
SEMA3D-203ENST00000463315 ROBO1Q9Y6N7 1651 aa19.63■□□□□ 0.73
SEMA3D-203ENST00000463315 PLEKHH1Q9ULM0 1364 aa19.63■□□□□ 0.73
SEMA3D-203ENST00000463315 POGKQ9P215 609 aa19.63■□□□□ 0.73
SEMA3D-203ENST00000463315 TRAK1Q9UPV9 953 aa19.63■□□□□ 0.73
SEMA3D-203ENST00000463315 HSPA1LP34931 641 aa19.62■□□□□ 0.73
SEMA3D-203ENST00000463315 NBPF1Q3BBV0 1214 aa19.62■□□□□ 0.73
SEMA3D-203ENST00000463315 TRPM1Q7Z4N2 1603 aa19.62■□□□□ 0.73
SEMA3D-203ENST00000463315 C1orf167Q5SNV9 1468 aa19.6■□□□□ 0.73
SEMA3D-203ENST00000463315 CCER1Q8TC90 406 aaPredicted RBP19.6■□□□□ 0.73
SEMA3D-203ENST00000463315 GPRASP1Q5JY77 1395 aa19.59■□□□□ 0.73
SEMA3D-203ENST00000463315 ADGRB2O60241 1585 aa19.59■□□□□ 0.73
SEMA3D-203ENST00000463315 BRINP3Q76B58 766 aa19.59■□□□□ 0.73
SEMA3D-203ENST00000463315 CACNB1Q02641 598 aaPredicted RBP19.58■□□□□ 0.72
SEMA3D-203ENST00000463315 NBPF8Q3BBV2 869 aa19.58■□□□□ 0.72
SEMA3D-203ENST00000463315 ROCK2O75116 1388 aaKnown RBP19.57■□□□□ 0.72
SEMA3D-203ENST00000463315 ARHGEF28Q8N1W1 1705 aaKnown RBP19.57■□□□□ 0.72
SEMA3D-203ENST00000463315 AHDC1Q5TGY3 1603 aaPredicted RBP19.56■□□□□ 0.72
SEMA3D-203ENST00000463315 EIF3AQ14152 1382 aaKnown RBP19.56■□□□□ 0.72
SEMA3D-203ENST00000463315 RALGAPBQ86X10 1494 aa19.55■□□□□ 0.72
SEMA3D-203ENST00000463315 FMN2Q9NZ56 1722 aa19.54■□□□□ 0.72
SEMA3D-203ENST00000463315 ANKARQ7Z5J8 1434 aa19.53■□□□□ 0.72
SEMA3D-203ENST00000463315 SAFB2Q14151 953 aaKnown RBP eCLIP19.53■□□□□ 0.72
SEMA3D-203ENST00000463315 CENPJQ9HC77 1338 aaPredicted RBP19.52■□□□□ 0.72
SEMA3D-203ENST00000463315 WASLO00401 505 aaPredicted RBP19.52■□□□□ 0.72
SEMA3D-203ENST00000463315 ORAI2Q96SN7 254 aa19.5■□□□□ 0.71
SEMA3D-203ENST00000463315 PHLPP1O60346 1717 aa19.5■□□□□ 0.71
SEMA3D-203ENST00000463315 NHSL1Q5SYE7 1610 aa19.5■□□□□ 0.71
SEMA3D-203ENST00000463315 MINK1Q8N4C8 1332 aaPredicted RBP19.5■□□□□ 0.71
SEMA3D-203ENST00000463315 ESCO1Q5FWF5 840 aa19.49■□□□□ 0.71
SEMA3D-203ENST00000463315 CARD11Q9BXL7 1154 aa19.49■□□□□ 0.71
SEMA3D-203ENST00000463315 COL16A1Q07092 1604 aaPredicted RBP19.49■□□□□ 0.71
SEMA3D-203ENST00000463315 NPHP3Q7Z494 1330 aa19.48■□□□□ 0.71
SEMA3D-203ENST00000463315 SBNO2Q9Y2G9 1366 aa19.47■□□□□ 0.71
SEMA3D-203ENST00000463315 TULP4Q9NRJ4 1543 aa19.47■□□□□ 0.71
SEMA3D-203ENST00000463315 LRRC59Q96AG4 307 aaKnown RBP19.47■□□□□ 0.71
SEMA3D-203ENST00000463315 HIRIP3Q9BW71 556 aaPredicted RBP19.47■□□□□ 0.71
SEMA3D-203ENST00000463315 SOS2Q07890 1332 aaPredicted RBP19.47■□□□□ 0.71
SEMA3D-203ENST00000463315 JCADQ9P266 1359 aa19.46■□□□□ 0.71
SEMA3D-203ENST00000463315 KIF1AQ12756 1690 aa19.46■□□□□ 0.71
SEMA3D-203ENST00000463315 SLC24A1O60721 1099 aa19.45■□□□□ 0.7
SEMA3D-203ENST00000463315 NUTM2FA1L443 756 aa19.43■□□□□ 0.7
SEMA3D-203ENST00000463315 CDK19Q9BWU1 502 aa19.43■□□□□ 0.7
SEMA3D-203ENST00000463315 PHF8Q9UPP1 1060 aa19.43■□□□□ 0.7
SEMA3D-203ENST00000463315 QRICH2Q9H0J4 1663 aa19.43■□□□□ 0.7
SEMA3D-203ENST00000463315 USP32Q8NFA0 1604 aa19.42■□□□□ 0.7
SEMA3D-203ENST00000463315 SPATA31A6Q5VVP1 1343 aa19.42■□□□□ 0.7
SEMA3D-203ENST00000463315 FOXO3O43524 673 aa19.41■□□□□ 0.7
SEMA3D-203ENST00000463315 EVC2Q86UK5 1308 aa19.41■□□□□ 0.7
SEMA3D-203ENST00000463315 C1QBPQ07021 282 aaKnown RBP19.4■□□□□ 0.7
SEMA3D-203ENST00000463315 NUDT16Q96DE0 195 aaKnown RBP19.4■□□□□ 0.7
SEMA3D-203ENST00000463315 CCDC61Q9Y6R9 512 aa19.4■□□□□ 0.7
SEMA3D-203ENST00000463315 PRR36Q9H6K5 1346 aa19.4■□□□□ 0.7
SEMA3D-203ENST00000463315 ATP7BP35670 1465 aa19.4■□□□□ 0.7
SEMA3D-203ENST00000463315 PXDNQ92626 1479 aa19.4■□□□□ 0.7
SEMA3D-203ENST00000463315 SHPRHQ149N8 1683 aa19.4■□□□□ 0.7
SEMA3D-203ENST00000463315 PSME1Q06323 249 aa19.38■□□□□ 0.69
SEMA3D-203ENST00000463315 DDX17Q92841 729 aaKnown RBP19.38■□□□□ 0.69
SEMA3D-203ENST00000463315 RGPD8O14715 1765 aaPredicted RBP19.37■□□□□ 0.69
SEMA3D-203ENST00000463315 ITSN1Q15811 1721 aa19.37■□□□□ 0.69
SEMA3D-203ENST00000463315 PLEKHG3A1L390 1219 aa19.37■□□□□ 0.69
SEMA3D-203ENST00000463315 PUS7Q96PZ0 661 aaKnown RBP19.37■□□□□ 0.69
SEMA3D-203ENST00000463315 SRPK2P78362 688 aaKnown RBP19.36■□□□□ 0.69
SEMA3D-203ENST00000463315 SBNO1A3KN83 1393 aa19.35■□□□□ 0.69
SEMA3D-203ENST00000463315 KRT28Q7Z3Y7 464 aa19.35■□□□□ 0.69
SEMA3D-203ENST00000463315 POLR3AO14802 1390 aaPredicted RBP19.34■□□□□ 0.69
SEMA3D-203ENST00000463315 PNPLA6Q8IY17 1366 aa19.34■□□□□ 0.69
SEMA3D-203ENST00000463315 MED1Q15648 1581 aaPredicted RBP19.34■□□□□ 0.69
SEMA3D-203ENST00000463315 TOPAZ1Q8N9V7 1692 aa19.33■□□□□ 0.69
SEMA3D-203ENST00000463315 PMFBP1Q8TBY8 1022 aa19.33■□□□□ 0.68
SEMA3D-203ENST00000463315 ATAD2Q6PL18 1390 aa19.32■□□□□ 0.68
SEMA3D-203ENST00000463315 USP47Q96K76 1375 aa19.32■□□□□ 0.68
SEMA3D-203ENST00000463315 SPATA31A3Q5VYP0 1347 aa19.32■□□□□ 0.68
SEMA3D-203ENST00000463315 ST20-MTHFSA0A0A6YYL1 179 aa19.32■□□□□ 0.68
SEMA3D-203ENST00000463315 NGDNQ8NEJ9 315 aaKnown RBP19.32■□□□□ 0.68
SEMA3D-203ENST00000463315 TESK2Q96S53 571 aa19.32■□□□□ 0.68
SEMA3D-203ENST00000463315 CABP2Q9NPB3 220 aa19.31■□□□□ 0.68
SEMA3D-203ENST00000463315 BRD4O60885 1362 aaPredicted RBP19.31■□□□□ 0.68
SEMA3D-203ENST00000463315 COL22A1Q8NFW1 1626 aaPredicted RBP19.3■□□□□ 0.68
SEMA3D-203ENST00000463315 SLC4A2P04920 1241 aa19.3■□□□□ 0.68
SEMA3D-203ENST00000463315 ARHGEF10O15013 1369 aa19.3■□□□□ 0.68
SEMA3D-203ENST00000463315 TNS3Q68CZ2 1445 aa19.29■□□□□ 0.68
SEMA3D-203ENST00000463315 PPIP5K1Q6PFW1 1433 aa19.29■□□□□ 0.68
SEMA3D-203ENST00000463315 ACEP12821 1306 aa19.28■□□□□ 0.68
SEMA3D-203ENST00000463315 XPCQ01831 940 aaPredicted RBP19.28■□□□□ 0.68
SEMA3D-203ENST00000463315 DISP3Q9P2K9 1392 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms