RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PPP2R1AP30153 589 aa16.25■□□□□ 0.19
HDAC4-208ENST00000463007 RAPGEF3O95398 923 aa16.24■□□□□ 0.19
HDAC4-208ENST00000463007 C14orf93Q9H972 538 aaKnown RBP16.24■□□□□ 0.19
HDAC4-208ENST00000463007 RPGRIP1LQ68CZ1 1315 aa16.24■□□□□ 0.19
HDAC4-208ENST00000463007 WDR43Q15061 677 aaKnown RBP eCLIP16.24■□□□□ 0.19
HDAC4-208ENST00000463007 FRAT1Q92837 279 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-208ENST00000463007 ZFYVE9O95405 1425 aa16.23■□□□□ 0.19
HDAC4-208ENST00000463007 SHPRHQ149N8 1683 aa16.22■□□□□ 0.19
HDAC4-208ENST00000463007 SLC24A1O60721 1099 aa16.22■□□□□ 0.19
HDAC4-208ENST00000463007 ZNF521Q96K83 1311 aa16.21■□□□□ 0.19
HDAC4-208ENST00000463007 FRAT2O75474 233 aaPredicted RBP16.21■□□□□ 0.19
HDAC4-208ENST00000463007 GSE1Q14687 1217 aa16.21■□□□□ 0.19
HDAC4-208ENST00000463007 TULP4Q9NRJ4 1543 aa16.21■□□□□ 0.18
HDAC4-208ENST00000463007 NEUROD2Q15784 382 aa16.2■□□□□ 0.18
HDAC4-208ENST00000463007 CARD14Q9BXL6 1004 aa16.2■□□□□ 0.18
HDAC4-208ENST00000463007 KNSTRNQ9Y448 316 aa16.2■□□□□ 0.18
HDAC4-208ENST00000463007 MS4A1P11836 297 aa16.2■□□□□ 0.18
HDAC4-208ENST00000463007 GGT6Q6P531 493 aa16.19■□□□□ 0.18
HDAC4-208ENST00000463007 DDRGK1Q96HY6 314 aa16.19■□□□□ 0.18
HDAC4-208ENST00000463007 PLEKHH1Q9ULM0 1364 aa16.18■□□□□ 0.18
HDAC4-208ENST00000463007 AGLP35573 1532 aa16.17■□□□□ 0.18
HDAC4-208ENST00000463007 SLKQ9H2G2 1235 aaPredicted RBP16.17■□□□□ 0.18
HDAC4-208ENST00000463007 CENPJQ9HC77 1338 aaPredicted RBP16.17■□□□□ 0.18
HDAC4-208ENST00000463007 CLTCQ00610 1675 aaKnown RBP16.16■□□□□ 0.18
HDAC4-208ENST00000463007 SPRYD3Q8NCJ5 442 aa16.16■□□□□ 0.18
HDAC4-208ENST00000463007 TNNT2P45379 298 aaPredicted RBP16.16■□□□□ 0.18
HDAC4-208ENST00000463007 SENP3Q9H4L4 574 aaPredicted RBP16.16■□□□□ 0.18
HDAC4-208ENST00000463007 BCAR3O75815 825 aa16.16■□□□□ 0.18
HDAC4-208ENST00000463007 USP35Q9P2H5 1018 aa16.16■□□□□ 0.18
HDAC4-208ENST00000463007 CANXP27824 592 aaKnown RBP16.15■□□□□ 0.18
HDAC4-208ENST00000463007 SETD1AO15047 1707 aaKnown RBP16.14■□□□□ 0.17
HDAC4-208ENST00000463007 PTPRMP28827 1452 aa16.12■□□□□ 0.17
HDAC4-208ENST00000463007 APAF1O14727 1248 aa16.12■□□□□ 0.17
HDAC4-208ENST00000463007 PUS7Q96PZ0 661 aaKnown RBP16.12■□□□□ 0.17
HDAC4-208ENST00000463007 POLR3AO14802 1390 aaPredicted RBP16.11■□□□□ 0.17
HDAC4-208ENST00000463007 GOLGA2Q08379 1002 aa16.11■□□□□ 0.17
HDAC4-208ENST00000463007 FAM161AQ3B820 660 aa16.11■□□□□ 0.17
HDAC4-208ENST00000463007 SPINK5Q9NQ38 1064 aaPredicted RBP16.11■□□□□ 0.17
HDAC4-208ENST00000463007 SPATA31D1Q6ZQQ2 1576 aa16.1■□□□□ 0.17
HDAC4-208ENST00000463007 IDI1Q13907 227 aa16.1■□□□□ 0.17
HDAC4-208ENST00000463007 TRMT2AQ8IZ69 625 aaKnown RBP16.1■□□□□ 0.17
HDAC4-208ENST00000463007 KIF13AQ9H1H9 1805 aa16.1■□□□□ 0.17
HDAC4-208ENST00000463007 NSD3Q9BZ95 1437 aa16.09■□□□□ 0.17
HDAC4-208ENST00000463007 C8orf34Q49A92 452 aa16.09■□□□□ 0.17
HDAC4-208ENST00000463007 DUSP27Q5VZP5 1158 aa16.09■□□□□ 0.17
HDAC4-208ENST00000463007 BCL2L13Q9BXK5 485 aa16.09■□□□□ 0.17
HDAC4-208ENST00000463007 TSPOAP1O95153 1857 aa16.09■□□□□ 0.17
HDAC4-208ENST00000463007 CENPQQ7L2Z9 268 aaPredicted RBP16.09■□□□□ 0.17
HDAC4-208ENST00000463007 SLC52A1Q9NWF4 448 aa16.09■□□□□ 0.17
HDAC4-208ENST00000463007 IQSEC2Q5JU85 1478 aa16.09■□□□□ 0.17
HDAC4-208ENST00000463007 ANKRD26Q9UPS8 1709 aa16.08■□□□□ 0.17
HDAC4-208ENST00000463007 RRP7AQ9Y3A4 280 aaKnown RBP16.08■□□□□ 0.17
HDAC4-208ENST00000463007 TMEM132EQ6IEE7 984 aa16.08■□□□□ 0.16
HDAC4-208ENST00000463007 TRAK1Q9UPV9 953 aa16.08■□□□□ 0.16
HDAC4-208ENST00000463007 COG6Q9Y2V7 657 aa16.08■□□□□ 0.16
HDAC4-208ENST00000463007 PANK1Q8TE04 598 aa16.07■□□□□ 0.16
HDAC4-208ENST00000463007 VGFO15240 615 aaPredicted RBP16.07■□□□□ 0.16
HDAC4-208ENST00000463007 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.06■□□□□ 0.16
HDAC4-208ENST00000463007 ARHGEF40Q8TER5 1519 aa16.06■□□□□ 0.16
HDAC4-208ENST00000463007 ALKQ9UM73 1620 aa16.06■□□□□ 0.16
HDAC4-208ENST00000463007 SEC24BO95487 1268 aa16.06■□□□□ 0.16
HDAC4-208ENST00000463007 CHGAP10645 457 aaKnown RBP16.06■□□□□ 0.16
HDAC4-208ENST00000463007 CLUAP1Q96AJ1 413 aa16.06■□□□□ 0.16
HDAC4-208ENST00000463007 DMRT2Q9Y5R5 561 aa16.06■□□□□ 0.16
HDAC4-208ENST00000463007 IGHDP01880 384 aa16.05■□□□□ 0.16
HDAC4-208ENST00000463007 ANKRD36BQ8N2N9 1353 aa16.05■□□□□ 0.16
HDAC4-208ENST00000463007 CYB5RLQ6IPT4 315 aa16.04■□□□□ 0.16
HDAC4-208ENST00000463007 CD163L1Q9NR16 1453 aa16.04■□□□□ 0.16
HDAC4-208ENST00000463007 POGKQ9P215 609 aa16.04■□□□□ 0.16
HDAC4-208ENST00000463007 GZF1Q9H116 711 aaPredicted RBP16.03■□□□□ 0.16
HDAC4-208ENST00000463007 NRXN3Q9Y4C0 1643 aa16.03■□□□□ 0.16
HDAC4-208ENST00000463007 NLRP1Q9C000 1473 aa16.03■□□□□ 0.16
HDAC4-208ENST00000463007 SLC12A5Q9H2X9 1139 aa16.03■□□□□ 0.16
HDAC4-208ENST00000463007 KDM2BQ8NHM5 1336 aa16.03■□□□□ 0.16
HDAC4-208ENST00000463007 ADGRB2O60241 1585 aa16.02■□□□□ 0.16
HDAC4-208ENST00000463007 SLFN5Q08AF3 891 aa16.02■□□□□ 0.15
HDAC4-208ENST00000463007 NSD2O96028 1365 aa16.02■□□□□ 0.15
HDAC4-208ENST00000463007 DLC1Q96QB1 1528 aa16.01■□□□□ 0.15
HDAC4-208ENST00000463007 A2ML1A8K2U0 1454 aa16.01■□□□□ 0.15
HDAC4-208ENST00000463007 NINLQ9Y2I6 1382 aa16.01■□□□□ 0.15
HDAC4-208ENST00000463007 YTHDC2Q9H6S0 1430 aaKnown RBP16■□□□□ 0.15
HDAC4-208ENST00000463007 MED14O60244 1454 aa16■□□□□ 0.15
HDAC4-208ENST00000463007 PPP6R1Q9UPN7 881 aa16■□□□□ 0.15
HDAC4-208ENST00000463007 FAM69CQ0P6D2 419 aa15.99■□□□□ 0.15
HDAC4-208ENST00000463007 TNNQ9UQP3 1299 aa15.99■□□□□ 0.15
HDAC4-208ENST00000463007 ABCC11Q96J66 1382 aa15.99■□□□□ 0.15
HDAC4-208ENST00000463007 COL3A1P02461 1466 aaPredicted RBP15.99■□□□□ 0.15
HDAC4-208ENST00000463007 EVC2Q86UK5 1308 aa15.99■□□□□ 0.15
HDAC4-208ENST00000463007 PHF23Q9BUL5 403 aaPredicted RBP15.99■□□□□ 0.15
HDAC4-208ENST00000463007 NKTRP30414 1462 aaKnown RBP15.99■□□□□ 0.15
HDAC4-208ENST00000463007 NUTM2DQ5VT03 806 aaPredicted RBP15.98■□□□□ 0.15
HDAC4-208ENST00000463007 NGEFQ8N5V2 710 aa15.98■□□□□ 0.15
HDAC4-208ENST00000463007 FBXO31Q5XUX0 539 aaPredicted RBP15.97■□□□□ 0.15
HDAC4-208ENST00000463007 KIF20BQ96Q89 1820 aa15.97■□□□□ 0.15
HDAC4-208ENST00000463007 A0A1W2PP64 1363 aa15.96■□□□□ 0.15
HDAC4-208ENST00000463007 KNDC1Q76NI1 1749 aa15.96■□□□□ 0.14
HDAC4-208ENST00000463007 CGNL1Q0VF96 1302 aa15.95■□□□□ 0.14
HDAC4-208ENST00000463007 NCBP3Q53F19 620 aaKnown RBP15.92■□□□□ 0.14
HDAC4-208ENST00000463007 MORC1Q86VD1 984 aa15.92■□□□□ 0.14
HDAC4-208ENST00000463007 CDC42BPGQ6DT37 1551 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms