RNA–Protein interactions for RNA: ENST00000462899.1

SMC3-202, Transcript of structural maintenance of chromosomes 3, humanhuman

TSL 5

Gene SMC3, Length 777 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3-202ENST00000462899 NUTM2EB1AL46 878 aaPredicted RBP12.13□□□□□ -0.47
SMC3-202ENST00000462899 NUTM2AQ8IVF1 878 aaPredicted RBP12.13□□□□□ -0.47
SMC3-202ENST00000462899 ZBTB12Q9Y330 459 aaPredicted RBP12.13□□□□□ -0.47
SMC3-202ENST00000462899 NUTM2DQ5VT03 806 aaPredicted RBP12.12□□□□□ -0.47
SMC3-202ENST00000462899 NEXMIFQ5QGS0 1516 aa12.11□□□□□ -0.47
SMC3-202ENST00000462899 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.11□□□□□ -0.47
SMC3-202ENST00000462899 METP08581 1390 aa12.11□□□□□ -0.47
SMC3-202ENST00000462899 LRRC59Q96AG4 307 aaKnown RBP12.11□□□□□ -0.47
SMC3-202ENST00000462899 QTRT2Q9H974 415 aaKnown RBP12.11□□□□□ -0.47
SMC3-202ENST00000462899 ATRNO75882 1429 aa12.11□□□□□ -0.47
SMC3-202ENST00000462899 PRAG1Q86YV5 1406 aa12.11□□□□□ -0.47
SMC3-202ENST00000462899 C1orf167Q5SNV9 1468 aa12.1□□□□□ -0.47
SMC3-202ENST00000462899 ATAD2Q6PL18 1390 aa12.1□□□□□ -0.47
SMC3-202ENST00000462899 C8orf37Q96NL8 207 aa12.1□□□□□ -0.47
SMC3-202ENST00000462899 LOC105371045A0A1W2PR82 267 aa12.09□□□□□ -0.47
SMC3-202ENST00000462899 DDX17Q92841 729 aaKnown RBP12.09□□□□□ -0.47
SMC3-202ENST00000462899 PTCH1Q13635 1447 aa12.09□□□□□ -0.47
SMC3-202ENST00000462899 MYOM2P54296 1465 aa12.08□□□□□ -0.47
SMC3-202ENST00000462899 CLTCL1P53675 1640 aa12.08□□□□□ -0.48
SMC3-202ENST00000462899 SOS2Q07890 1332 aaPredicted RBP12.08□□□□□ -0.48
SMC3-202ENST00000462899 ROCK1Q13464 1354 aa12.07□□□□□ -0.48
SMC3-202ENST00000462899 BRWD3Q6RI45 1802 aa12.07□□□□□ -0.48
SMC3-202ENST00000462899 LRP5O75197 1615 aa12.07□□□□□ -0.48
SMC3-202ENST00000462899 KIF1BO60333 1816 aa12.07□□□□□ -0.48
SMC3-202ENST00000462899 CHGAP10645 457 aaKnown RBP12.06□□□□□ -0.48
SMC3-202ENST00000462899 FNBP4Q8N3X1 1017 aaPredicted RBP12.06□□□□□ -0.48
SMC3-202ENST00000462899 BCL9LQ86UU0 1499 aa12.05□□□□□ -0.48
SMC3-202ENST00000462899 PXDNQ92626 1479 aa12.04□□□□□ -0.48
SMC3-202ENST00000462899 NGLY1Q96IV0 654 aa12.04□□□□□ -0.48
SMC3-202ENST00000462899 GLI3P10071 1580 aa12.04□□□□□ -0.48
SMC3-202ENST00000462899 CDC42BPGQ6DT37 1551 aa12.03□□□□□ -0.48
SMC3-202ENST00000462899 PPLO60437 1756 aa12.02□□□□□ -0.48
SMC3-202ENST00000462899 ADAMTS2O95450 1211 aa12.02□□□□□ -0.49
SMC3-202ENST00000462899 USP21Q9UK80 565 aa12.02□□□□□ -0.49
SMC3-202ENST00000462899 TRPC5Q9UL62 973 aaPredicted RBP12.02□□□□□ -0.49
SMC3-202ENST00000462899 NUP155O75694 1391 aa12.01□□□□□ -0.49
SMC3-202ENST00000462899 ROBO2Q9HCK4 1378 aa12.01□□□□□ -0.49
SMC3-202ENST00000462899 FAM50AQ14320 339 aaKnown RBP12□□□□□ -0.49
SMC3-202ENST00000462899 ZRANB1Q9UGI0 708 aa12□□□□□ -0.49
SMC3-202ENST00000462899 CCDC125Q86Z20 511 aa11.99□□□□□ -0.49
SMC3-202ENST00000462899 ORAI2Q96SN7 254 aa11.99□□□□□ -0.49
SMC3-202ENST00000462899 SLIT2O94813 1529 aa11.99□□□□□ -0.49
SMC3-202ENST00000462899 ABCA3Q99758 1704 aa11.99□□□□□ -0.49
SMC3-202ENST00000462899 USP32Q8NFA0 1604 aa11.98□□□□□ -0.49
SMC3-202ENST00000462899 NWD2Q9ULI1 1742 aa11.97□□□□□ -0.49
SMC3-202ENST00000462899 PLCH1Q4KWH8 1693 aa11.97□□□□□ -0.49
SMC3-202ENST00000462899 HFM1A2PYH4 1435 aa11.97□□□□□ -0.49
SMC3-202ENST00000462899 BLMP54132 1417 aaPredicted RBP11.97□□□□□ -0.49
SMC3-202ENST00000462899 KNDC1Q76NI1 1749 aa11.97□□□□□ -0.49
SMC3-202ENST00000462899 RALGAPBQ86X10 1494 aa11.96□□□□□ -0.49
SMC3-202ENST00000462899 FMN2Q9NZ56 1722 aa11.96□□□□□ -0.49
SMC3-202ENST00000462899 KIF1AQ12756 1690 aa11.95□□□□□ -0.5
SMC3-202ENST00000462899 IFT172Q9UG01 1749 aa11.94□□□□□ -0.5
SMC3-202ENST00000462899 GJD4Q96KN9 370 aaPredicted RBP11.94□□□□□ -0.5
SMC3-202ENST00000462899 RGPD8O14715 1765 aaPredicted RBP11.93□□□□□ -0.5
SMC3-202ENST00000462899 ZNF326Q5BKZ1 582 aaKnown RBP11.93□□□□□ -0.5
SMC3-202ENST00000462899 NRAPQ86VF7 1730 aa11.93□□□□□ -0.5
SMC3-202ENST00000462899 TECPR2O15040 1411 aa11.93□□□□□ -0.5
SMC3-202ENST00000462899 NPHP3Q7Z494 1330 aa11.92□□□□□ -0.5
SMC3-202ENST00000462899 TNS1Q9HBL0 1735 aaKnown RBP11.9□□□□□ -0.5
SMC3-202ENST00000462899 RGPD1P0DJD0 1748 aa11.89□□□□□ -0.51
SMC3-202ENST00000462899 NAIPQ13075 1403 aa11.89□□□□□ -0.51
SMC3-202ENST00000462899 DEFB132Q7Z7B7 95 aa11.89□□□□□ -0.51
SMC3-202ENST00000462899 UNC5CLQ8IV45 518 aa11.88□□□□□ -0.51
SMC3-202ENST00000462899 CRYBG1Q9Y4K1 1723 aa11.87□□□□□ -0.51
SMC3-202ENST00000462899 SPATA31A3Q5VYP0 1347 aa11.86□□□□□ -0.51
SMC3-202ENST00000462899 VGFO15240 615 aaPredicted RBP11.86□□□□□ -0.51
SMC3-202ENST00000462899 ONECUT3O60422 494 aaPredicted RBP11.86□□□□□ -0.51
SMC3-202ENST00000462899 RBM42Q9BTD8 480 aaKnown RBP11.86□□□□□ -0.51
SMC3-202ENST00000462899 TRPM3Q9HCF6 1732 aaPredicted RBP11.86□□□□□ -0.51
SMC3-202ENST00000462899 CCDC144AA2RUR9 1427 aa11.86□□□□□ -0.51
SMC3-202ENST00000462899 RPGRIP1LQ68CZ1 1315 aa11.86□□□□□ -0.51
SMC3-202ENST00000462899 THSD7AQ9UPZ6 1657 aa11.85□□□□□ -0.51
SMC3-202ENST00000462899 LRPPRCP42704 1394 aaKnown RBP11.85□□□□□ -0.51
SMC3-202ENST00000462899 FOXO3O43524 673 aa11.85□□□□□ -0.51
SMC3-202ENST00000462899 XPCQ01831 940 aaPredicted RBP11.85□□□□□ -0.51
SMC3-202ENST00000462899 ESCO1Q5FWF5 840 aa11.85□□□□□ -0.51
SMC3-202ENST00000462899 TNS3Q68CZ2 1445 aa11.85□□□□□ -0.51
SMC3-202ENST00000462899 ALS2Q96Q42 1657 aa11.84□□□□□ -0.51
SMC3-202ENST00000462899 PLEKHH1Q9ULM0 1364 aa11.83□□□□□ -0.52
SMC3-202ENST00000462899 VPS72Q15906 364 aa11.83□□□□□ -0.52
SMC3-202ENST00000462899 SEPT12Q8IYM1 358 aa11.83□□□□□ -0.52
SMC3-202ENST00000462899 DISP2A7MBM2 1401 aa11.83□□□□□ -0.52
SMC3-202ENST00000462899 RRBP1Q9P2E9 1410 aaKnown RBP11.83□□□□□ -0.52
SMC3-202ENST00000462899 RREB1Q92766 1687 aa11.82□□□□□ -0.52
SMC3-202ENST00000462899 SPDYE2BA6NHP3 402 aa11.82□□□□□ -0.52
SMC3-202ENST00000462899 SPDYE6P0CI01 402 aa11.82□□□□□ -0.52
SMC3-202ENST00000462899 HRCP23327 699 aa11.82□□□□□ -0.52
SMC3-202ENST00000462899 SPDYE2Q495Y8 402 aa11.82□□□□□ -0.52
SMC3-202ENST00000462899 ZNF692Q9BU19 519 aaPredicted RBP11.82□□□□□ -0.52
SMC3-202ENST00000462899 NRXN1Q9ULB1 1477 aa11.82□□□□□ -0.52
SMC3-202ENST00000462899 COL14A1Q05707 1796 aaKnown RBP11.82□□□□□ -0.52
SMC3-202ENST00000462899 ABCC11Q96J66 1382 aa11.81□□□□□ -0.52
SMC3-202ENST00000462899 PIK3C2GO75747 1445 aa11.81□□□□□ -0.52
SMC3-202ENST00000462899 SPATA31E1Q6ZUB1 1445 aa11.81□□□□□ -0.52
SMC3-202ENST00000462899 SPDYE4A6NLX3 237 aa11.81□□□□□ -0.52
SMC3-202ENST00000462899 FKBP8Q14318 412 aa11.8□□□□□ -0.52
SMC3-202ENST00000462899 SBNO1A3KN83 1393 aa11.79□□□□□ -0.52
SMC3-202ENST00000462899 ADGRB2O60241 1585 aa11.79□□□□□ -0.52
SMC3-202ENST00000462899 UTRNP46939 3433 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms