RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 LETM1O95202 739 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-216ENST00000461872 FAM184AQ8NB25 1140 aa8.69□□□□□ -1.02
SYNE1-216ENST00000461872 ADAMTS8Q9UP79 889 aa8.69□□□□□ -1.02
SYNE1-216ENST00000461872 DISP1Q96F81 1524 aa8.68□□□□□ -1.02
SYNE1-216ENST00000461872 SLKQ9H2G2 1235 aaPredicted RBP8.68□□□□□ -1.02
SYNE1-216ENST00000461872 ADGRL1O94910 1474 aa8.68□□□□□ -1.02
SYNE1-216ENST00000461872 ALDH1L2Q3SY69 923 aa8.68□□□□□ -1.02
SYNE1-216ENST00000461872 CLASP1Q7Z460 1538 aa8.68□□□□□ -1.02
SYNE1-216ENST00000461872 ARAP3Q8WWN8 1544 aa8.68□□□□□ -1.02
SYNE1-216ENST00000461872 HS1BP3Q53T59 392 aa8.68□□□□□ -1.02
SYNE1-216ENST00000461872 MYO5CQ9NQX4 1742 aa8.67□□□□□ -1.02
SYNE1-216ENST00000461872 U2SURPO15042 1029 aaKnown RBP8.67□□□□□ -1.02
SYNE1-216ENST00000461872 GPATCH3Q96I76 525 aa8.67□□□□□ -1.02
SYNE1-216ENST00000461872 PRDM15P57071 1507 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-216ENST00000461872 APAF1O14727 1248 aa8.67□□□□□ -1.02
SYNE1-216ENST00000461872 INTS3Q68E01 1043 aaKnown RBP8.67□□□□□ -1.02
SYNE1-216ENST00000461872 CDC45O75419 566 aa8.67□□□□□ -1.02
SYNE1-216ENST00000461872 SLC52A1Q9NWF4 448 aa8.67□□□□□ -1.02
SYNE1-216ENST00000461872 KIF3BO15066 747 aa8.67□□□□□ -1.02
SYNE1-216ENST00000461872 SRPK2P78362 688 aaKnown RBP8.66□□□□□ -1.02
SYNE1-216ENST00000461872 KIAA1211Q6ZU35 1233 aa8.66□□□□□ -1.02
SYNE1-216ENST00000461872 SHROOM2Q13796 1616 aa8.66□□□□□ -1.02
SYNE1-216ENST00000461872 DNTTIP2Q5QJE6 756 aaKnown RBP8.66□□□□□ -1.02
SYNE1-216ENST00000461872 MVPQ14764 893 aaKnown RBP8.66□□□□□ -1.02
SYNE1-216ENST00000461872 TTC37Q6PGP7 1564 aa8.66□□□□□ -1.02
SYNE1-216ENST00000461872 UNC13BO14795 1591 aa8.65□□□□□ -1.02
SYNE1-216ENST00000461872 PLB1Q6P1J6 1458 aa8.65□□□□□ -1.02
SYNE1-216ENST00000461872 NEUROD2Q15784 382 aa8.65□□□□□ -1.02
SYNE1-216ENST00000461872 PREX2Q70Z35 1606 aa8.65□□□□□ -1.02
SYNE1-216ENST00000461872 STK31Q9BXU1 1019 aa8.65□□□□□ -1.02
SYNE1-216ENST00000461872 IQGAP3Q86VI3 1631 aa8.65□□□□□ -1.03
SYNE1-216ENST00000461872 MFAP1P55081 439 aaKnown RBP8.65□□□□□ -1.03
SYNE1-216ENST00000461872 CCDC39Q9UFE4 941 aa8.65□□□□□ -1.03
SYNE1-216ENST00000461872 PAK3O75914 559 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-216ENST00000461872 CCDC34Q96HJ3 373 aa8.64□□□□□ -1.03
SYNE1-216ENST00000461872 GOLGA6L4A6NEF3 574 aa8.64□□□□□ -1.03
SYNE1-216ENST00000461872 DUSP27Q5VZP5 1158 aa8.64□□□□□ -1.03
SYNE1-216ENST00000461872 MAGI3Q5TCQ9 1506 aa8.64□□□□□ -1.03
SYNE1-216ENST00000461872 HDAC1Q13547 482 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-216ENST00000461872 ARHGAP45Q92619 1136 aa8.64□□□□□ -1.03
SYNE1-216ENST00000461872 ANKRD36BQ8N2N9 1353 aa8.64□□□□□ -1.03
SYNE1-216ENST00000461872 PLCH2O75038 1416 aa8.64□□□□□ -1.03
SYNE1-216ENST00000461872 HSP90AB4PQ58FF6 505 aa8.63□□□□□ -1.03
SYNE1-216ENST00000461872 DIAPH1O60610 1272 aaKnown RBP8.63□□□□□ -1.03
SYNE1-216ENST00000461872 COG6Q9Y2V7 657 aa8.63□□□□□ -1.03
SYNE1-216ENST00000461872 DDX49Q9Y6V7 483 aaKnown RBP8.63□□□□□ -1.03
SYNE1-216ENST00000461872 TERF1P54274 439 aa8.63□□□□□ -1.03
SYNE1-216ENST00000461872 KDM5BQ9UGL1 1544 aa8.63□□□□□ -1.03
SYNE1-216ENST00000461872 ZFYVE9O95405 1425 aa8.63□□□□□ -1.03
SYNE1-216ENST00000461872 RTF1Q92541 710 aaKnown RBP8.63□□□□□ -1.03
SYNE1-216ENST00000461872 ATP10BO94823 1461 aa8.63□□□□□ -1.03
SYNE1-216ENST00000461872 ABCA8O94911 1581 aa8.63□□□□□ -1.03
SYNE1-216ENST00000461872 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.63□□□□□ -1.03
SYNE1-216ENST00000461872 NEURL4Q96JN8 1562 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 MCM4P33991 863 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 REREQ9P2R6 1566 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 TRAK2O60296 914 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 ATF7IPQ6VMQ6 1270 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 WWC1Q8IX03 1113 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 TCP11L2Q8N4U5 519 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 MYOM2P54296 1465 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 CFAP74Q9C0B2 1584 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 CAVIN1Q6NZI2 390 aaKnown RBP8.62□□□□□ -1.03
SYNE1-216ENST00000461872 ABCC10Q5T3U5 1492 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 RUFY2Q8WXA3 655 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 SNX21Q969T3 373 aa8.62□□□□□ -1.03
SYNE1-216ENST00000461872 FCHSD2O94868 740 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 NASPP49321 788 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-216ENST00000461872 KIAA1210Q9ULL0 1709 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 BMP2KLQ5H9B9 411 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 PPP6R1Q9UPN7 881 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 SRCIN1Q9C0H9 1055 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 SYCP2Q9BX26 1530 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 TBC1D32Q96NH3 1257 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 TRPM2O94759 1503 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 PLIN1O60240 522 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 CAVIN2O95810 425 aa8.61□□□□□ -1.03
SYNE1-216ENST00000461872 TRPM1Q7Z4N2 1603 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 PDCP20941 246 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 DIAPH3Q9NSV4 1193 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 KDM2BQ8NHM5 1336 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 RTN4Q9NQC3 1192 aaKnown RBP8.6□□□□□ -1.03
SYNE1-216ENST00000461872 CLCN1P35523 988 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 TPM4P67936 248 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 CCDC184Q52MB2 194 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 CDC42BPAQ5VT25 1732 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 PER1O15534 1290 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-216ENST00000461872 TAF3Q5VWG9 929 aa8.6□□□□□ -1.03
SYNE1-216ENST00000461872 ESPNB1AK53 854 aa8.59□□□□□ -1.03
SYNE1-216ENST00000461872 KIF1BO60333 1816 aa8.59□□□□□ -1.03
SYNE1-216ENST00000461872 FRAT2O75474 233 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-216ENST00000461872 AMER1Q5JTC6 1135 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-216ENST00000461872 ZSCAN30Q86W11 494 aa8.59□□□□□ -1.03
SYNE1-216ENST00000461872 TESK2Q96S53 571 aa8.59□□□□□ -1.03
SYNE1-216ENST00000461872 A2MP01023 1474 aa8.59□□□□□ -1.03
SYNE1-216ENST00000461872 LRRFIP1Q32MZ4 808 aaKnown RBP8.59□□□□□ -1.03
SYNE1-216ENST00000461872 SOS1Q07889 1333 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-216ENST00000461872 TET3O43151 1660 aa8.59□□□□□ -1.03
SYNE1-216ENST00000461872 EPB41L2O43491 1005 aaKnown RBP8.58□□□□□ -1.04
SYNE1-216ENST00000461872 RPAP2Q8IXW5 612 aaPredicted RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms