RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 CDK12Q9NYV4 1490 aaPredicted RBP21.94■■□□□ 1.1
SMPD4-216ENST00000461187 MARF1Q9Y4F3 1742 aaKnown RBP21.94■■□□□ 1.1
SMPD4-216ENST00000461187 RGPD8O14715 1765 aaPredicted RBP21.93■■□□□ 1.1
SMPD4-216ENST00000461187 TECPR2O15040 1411 aa21.93■■□□□ 1.1
SMPD4-216ENST00000461187 C8orf37Q96NL8 207 aa21.92■■□□□ 1.1
SMPD4-216ENST00000461187 FMN2Q9NZ56 1722 aa21.92■■□□□ 1.1
SMPD4-216ENST00000461187 PIK3C2GO75747 1445 aa21.91■■□□□ 1.1
SMPD4-216ENST00000461187 LRPPRCP42704 1394 aaKnown RBP21.9■■□□□ 1.1
SMPD4-216ENST00000461187 STK26Q9P289 416 aa21.89■■□□□ 1.09
SMPD4-216ENST00000461187 ABCC11Q96J66 1382 aa21.88■■□□□ 1.09
SMPD4-216ENST00000461187 TMEM132EQ6IEE7 984 aa21.88■■□□□ 1.09
SMPD4-216ENST00000461187 WAPLQ7Z5K2 1190 aa21.88■■□□□ 1.09
SMPD4-216ENST00000461187 UPF1Q92900 1129 aaKnown RBP eCLIP21.88■■□□□ 1.09
SMPD4-216ENST00000461187 ACIN1Q9UKV3 1341 aaKnown RBP21.87■■□□□ 1.09
SMPD4-216ENST00000461187 PXDNQ92626 1479 aa21.87■■□□□ 1.09
SMPD4-216ENST00000461187 ADAMTS2O95450 1211 aa21.86■■□□□ 1.09
SMPD4-216ENST00000461187 ESCO1Q5FWF5 840 aa21.86■■□□□ 1.09
SMPD4-216ENST00000461187 QTRT2Q9H974 415 aaKnown RBP21.86■■□□□ 1.09
SMPD4-216ENST00000461187 PLEKHH1Q9ULM0 1364 aa21.86■■□□□ 1.09
SMPD4-216ENST00000461187 NGLY1Q96IV0 654 aa21.85■■□□□ 1.09
SMPD4-216ENST00000461187 YTHDC2Q9H6S0 1430 aaKnown RBP21.85■■□□□ 1.09
SMPD4-216ENST00000461187 NRXN1Q9ULB1 1477 aa21.84■■□□□ 1.09
SMPD4-216ENST00000461187 NPHP3Q7Z494 1330 aa21.84■■□□□ 1.09
SMPD4-216ENST00000461187 KIF1AQ12756 1690 aa21.84■■□□□ 1.09
SMPD4-216ENST00000461187 RGS12O14924 1447 aa21.83■■□□□ 1.09
SMPD4-216ENST00000461187 RBM6P78332 1123 aaKnown RBP21.83■■□□□ 1.09
SMPD4-216ENST00000461187 MYOM2P54296 1465 aa21.83■■□□□ 1.08
SMPD4-216ENST00000461187 NUTM2FA1L443 756 aa21.81■■□□□ 1.08
SMPD4-216ENST00000461187 FOXO3O43524 673 aa21.81■■□□□ 1.08
SMPD4-216ENST00000461187 C14orf93Q9H972 538 aaKnown RBP21.81■■□□□ 1.08
SMPD4-216ENST00000461187 RAB3GAP2Q9H2M9 1393 aa21.79■■□□□ 1.08
SMPD4-216ENST00000461187 SIRT1Q96EB6 747 aa21.79■■□□□ 1.08
SMPD4-216ENST00000461187 XPCQ01831 940 aaPredicted RBP21.78■■□□□ 1.08
SMPD4-216ENST00000461187 FNBP4Q8N3X1 1017 aaPredicted RBP21.78■■□□□ 1.08
SMPD4-216ENST00000461187 CFAP70Q5T0N1 1121 aa21.77■■□□□ 1.08
SMPD4-216ENST00000461187 USP21Q9UK80 565 aa21.77■■□□□ 1.08
SMPD4-216ENST00000461187 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.76■■□□□ 1.07
SMPD4-216ENST00000461187 DHX57Q6P158 1386 aaKnown RBP21.75■■□□□ 1.07
SMPD4-216ENST00000461187 ATRNO75882 1429 aa21.74■■□□□ 1.07
SMPD4-216ENST00000461187 TRPC5Q9UL62 973 aaPredicted RBP21.74■■□□□ 1.07
SMPD4-216ENST00000461187 DLC1Q96QB1 1528 aa21.72■■□□□ 1.07
SMPD4-216ENST00000461187 USP32Q8NFA0 1604 aa21.72■■□□□ 1.07
SMPD4-216ENST00000461187 BCL9LQ86UU0 1499 aa21.71■■□□□ 1.07
SMPD4-216ENST00000461187 ABCA3Q99758 1704 aa21.71■■□□□ 1.07
SMPD4-216ENST00000461187 ADGRB1O14514 1584 aa21.7■■□□□ 1.06
SMPD4-216ENST00000461187 SPATA31A3Q5VYP0 1347 aa21.7■■□□□ 1.06
SMPD4-216ENST00000461187 ADGRB2O60241 1585 aa21.7■■□□□ 1.06
SMPD4-216ENST00000461187 EP400Q96L91 3159 aa21.69■■□□□ 1.06
SMPD4-216ENST00000461187 PRAM1Q96QH2 718 aa21.69■■□□□ 1.06
SMPD4-216ENST00000461187 KRT28Q7Z3Y7 464 aa21.68■■□□□ 1.06
SMPD4-216ENST00000461187 BRWD3Q6RI45 1802 aa21.67■■□□□ 1.06
SMPD4-216ENST00000461187 SAFB2Q14151 953 aaKnown RBP eCLIP21.67■■□□□ 1.06
SMPD4-216ENST00000461187 PHF8Q9UPP1 1060 aa21.67■■□□□ 1.06
SMPD4-216ENST00000461187 PLCH1Q4KWH8 1693 aa21.66■■□□□ 1.06
SMPD4-216ENST00000461187 TRPM3Q9HCF6 1732 aaPredicted RBP21.65■■□□□ 1.06
SMPD4-216ENST00000461187 NWD2Q9ULI1 1742 aa21.65■■□□□ 1.06
SMPD4-216ENST00000461187 SLIT2O94813 1529 aa21.65■■□□□ 1.06
SMPD4-216ENST00000461187 TNS3Q68CZ2 1445 aa21.64■■□□□ 1.06
SMPD4-216ENST00000461187 ATAD2Q6PL18 1390 aa21.64■■□□□ 1.06
SMPD4-216ENST00000461187 ARHGEF28Q8N1W1 1705 aaKnown RBP21.63■■□□□ 1.05
SMPD4-216ENST00000461187 GLI3P10071 1580 aa21.63■■□□□ 1.05
SMPD4-216ENST00000461187 POGKQ9P215 609 aa21.63■■□□□ 1.05
SMPD4-216ENST00000461187 ANKARQ7Z5J8 1434 aa21.63■■□□□ 1.05
SMPD4-216ENST00000461187 ALS2Q96Q42 1657 aa21.61■■□□□ 1.05
SMPD4-216ENST00000461187 HRCP23327 699 aa21.61■■□□□ 1.05
SMPD4-216ENST00000461187 PSME1Q06323 249 aa21.61■■□□□ 1.05
SMPD4-216ENST00000461187 DCAF11Q8TEB1 546 aa21.61■■□□□ 1.05
SMPD4-216ENST00000461187 GJD4Q96KN9 370 aaPredicted RBP21.61■■□□□ 1.05
SMPD4-216ENST00000461187 KDM2AQ9Y2K7 1162 aa21.61■■□□□ 1.05
SMPD4-216ENST00000461187 SBNO1A3KN83 1393 aa21.61■■□□□ 1.05
SMPD4-216ENST00000461187 TRAK1Q9UPV9 953 aa21.6■■□□□ 1.05
SMPD4-216ENST00000461187 UNC5CLQ8IV45 518 aa21.59■■□□□ 1.05
SMPD4-216ENST00000461187 ITSN1Q15811 1721 aa21.58■■□□□ 1.05
SMPD4-216ENST00000461187 RALGAPBQ86X10 1494 aa21.58■■□□□ 1.04
SMPD4-216ENST00000461187 PMFBP1Q8TBY8 1022 aa21.57■■□□□ 1.04
SMPD4-216ENST00000461187 CABLES1Q8TDN4 633 aa21.57■■□□□ 1.04
SMPD4-216ENST00000461187 STAC3Q96MF2 364 aa21.57■■□□□ 1.04
SMPD4-216ENST00000461187 TULP4Q9NRJ4 1543 aa21.56■■□□□ 1.04
SMPD4-216ENST00000461187 CRYBG1Q9Y4K1 1723 aa21.56■■□□□ 1.04
SMPD4-216ENST00000461187 HIRIP3Q9BW71 556 aaPredicted RBP21.56■■□□□ 1.04
SMPD4-216ENST00000461187 ARHGEF10O15013 1369 aa21.56■■□□□ 1.04
SMPD4-216ENST00000461187 MINK1Q8N4C8 1332 aaPredicted RBP21.55■■□□□ 1.04
SMPD4-216ENST00000461187 HAP1P54257 671 aaPredicted RBP21.55■■□□□ 1.04
SMPD4-216ENST00000461187 NRAPQ86VF7 1730 aa21.55■■□□□ 1.04
SMPD4-216ENST00000461187 KIAA1210Q9ULL0 1709 aa21.55■■□□□ 1.04
SMPD4-216ENST00000461187 LMOD2Q6P5Q4 547 aa21.54■■□□□ 1.04
SMPD4-216ENST00000461187 PRR36Q9H6K5 1346 aa21.54■■□□□ 1.04
SMPD4-216ENST00000461187 EIF3AQ14152 1382 aaKnown RBP21.53■■□□□ 1.04
SMPD4-216ENST00000461187 PLEKHG5O94827 1062 aa21.52■■□□□ 1.04
SMPD4-216ENST00000461187 WASLO00401 505 aaPredicted RBP21.51■■□□□ 1.03
SMPD4-216ENST00000461187 COL14A1Q05707 1796 aaKnown RBP21.5■■□□□ 1.03
SMPD4-216ENST00000461187 VPS72Q15906 364 aa21.49■■□□□ 1.03
SMPD4-216ENST00000461187 GPRASP1Q5JY77 1395 aa21.48■■□□□ 1.03
SMPD4-216ENST00000461187 CCDC125Q86Z20 511 aa21.48■■□□□ 1.03
SMPD4-216ENST00000461187 TOPAZ1Q8N9V7 1692 aa21.47■■□□□ 1.03
SMPD4-216ENST00000461187 FAM83GA6ND36 823 aa21.47■■□□□ 1.03
SMPD4-216ENST00000461187 ATP7BP35670 1465 aa21.46■■□□□ 1.03
SMPD4-216ENST00000461187 SRCAPQ6ZRS2 3230 aa21.45■■□□□ 1.02
SMPD4-216ENST00000461187 ONECUT3O60422 494 aaPredicted RBP21.44■■□□□ 1.02
SMPD4-216ENST00000461187 SEPT12Q8IYM1 358 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms