RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ANP32BQ92688 251 aaKnown RBP14.67□□□□□ -0.06
NPHP4-204ENST00000460696 SCAF11Q99590 1463 aaKnown RBP14.67□□□□□ -0.06
NPHP4-204ENST00000460696 UBAP1LF5GYI3 381 aa14.67□□□□□ -0.06
NPHP4-204ENST00000460696 COG3Q96JB2 828 aa14.67□□□□□ -0.06
NPHP4-204ENST00000460696 USP35Q9P2H5 1018 aa14.67□□□□□ -0.06
NPHP4-204ENST00000460696 EXOSC9Q06265 439 aaKnown RBP14.66□□□□□ -0.06
NPHP4-204ENST00000460696 CABP1Q9NZU7 370 aa14.66□□□□□ -0.06
NPHP4-204ENST00000460696 ESCO1Q5FWF5 840 aa14.66□□□□□ -0.06
NPHP4-204ENST00000460696 ARHGEF12Q9NZN5 1544 aa14.66□□□□□ -0.06
NPHP4-204ENST00000460696 DUOX2Q9NRD8 1548 aa14.66□□□□□ -0.06
NPHP4-204ENST00000460696 PPP6R1Q9UPN7 881 aa14.66□□□□□ -0.06
NPHP4-204ENST00000460696 NCLP19338 710 aaKnown RBP14.65□□□□□ -0.06
NPHP4-204ENST00000460696 A2MP01023 1474 aa14.65□□□□□ -0.06
NPHP4-204ENST00000460696 NOS1P29475 1434 aa14.65□□□□□ -0.06
NPHP4-204ENST00000460696 PSME1Q06323 249 aa14.65□□□□□ -0.06
NPHP4-204ENST00000460696 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.65□□□□□ -0.06
NPHP4-204ENST00000460696 SLC52A1Q9NWF4 448 aa14.65□□□□□ -0.06
NPHP4-204ENST00000460696 GZF1Q9H116 711 aaPredicted RBP14.64□□□□□ -0.07
NPHP4-204ENST00000460696 ABCC10Q5T3U5 1492 aa14.64□□□□□ -0.07
NPHP4-204ENST00000460696 PDE3AQ14432 1141 aa14.64□□□□□ -0.07
NPHP4-204ENST00000460696 SLC4A10Q6U841 1118 aa14.64□□□□□ -0.07
NPHP4-204ENST00000460696 MBD5Q9P267 1494 aa14.64□□□□□ -0.07
NPHP4-204ENST00000460696 ANKRD45Q5TZF3 282 aa14.63□□□□□ -0.07
NPHP4-204ENST00000460696 CASC1Q6TDU7 716 aa14.63□□□□□ -0.07
NPHP4-204ENST00000460696 CDK19Q9BWU1 502 aa14.63□□□□□ -0.07
NPHP4-204ENST00000460696 DDX19BQ9UMR2 479 aa14.63□□□□□ -0.07
NPHP4-204ENST00000460696 PRKAR2BP31323 418 aa14.62□□□□□ -0.07
NPHP4-204ENST00000460696 KDM5BQ9UGL1 1544 aa14.62□□□□□ -0.07
NPHP4-204ENST00000460696 RIMBP3CA6NJZ7 1639 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 RIMBP3BA6NNM3 1639 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 RIMBP3Q9UFD9 1639 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 GOLGA6L22H0YM25 854 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 RPGRIP1LQ68CZ1 1315 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 YEATS2Q9ULM3 1422 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 AMPHP49418 695 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 LRRIQ1Q96JM4 1722 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 LMOD3Q0VAK6 560 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 TPRNQ4KMQ1 711 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 LNPKQ9C0E8 428 aa14.61□□□□□ -0.07
NPHP4-204ENST00000460696 FOXD4L1Q9NU39 408 aa14.6□□□□□ -0.07
NPHP4-204ENST00000460696 WAPLQ7Z5K2 1190 aa14.6□□□□□ -0.07
NPHP4-204ENST00000460696 LRPPRCP42704 1394 aaKnown RBP14.6□□□□□ -0.07
NPHP4-204ENST00000460696 C14orf93Q9H972 538 aaKnown RBP14.6□□□□□ -0.07
NPHP4-204ENST00000460696 CARD14Q9BXL6 1004 aa14.59□□□□□ -0.07
NPHP4-204ENST00000460696 PDZRN3Q9UPQ7 1066 aa14.59□□□□□ -0.07
NPHP4-204ENST00000460696 WDR63Q8IWG1 891 aa14.58□□□□□ -0.07
NPHP4-204ENST00000460696 ABCA8O94911 1581 aa14.58□□□□□ -0.08
NPHP4-204ENST00000460696 PLEKHH1Q9ULM0 1364 aa14.58□□□□□ -0.08
NPHP4-204ENST00000460696 NFKBIBQ15653 356 aa14.58□□□□□ -0.08
NPHP4-204ENST00000460696 COL17A1Q9UMD9 1497 aaPredicted RBP14.57□□□□□ -0.08
NPHP4-204ENST00000460696 ADGBQ8N7X0 1667 aa14.57□□□□□ -0.08
NPHP4-204ENST00000460696 RARSP54136 660 aaKnown RBP14.56□□□□□ -0.08
NPHP4-204ENST00000460696 NOB1Q9ULX3 412 aaKnown RBP14.56□□□□□ -0.08
NPHP4-204ENST00000460696 KIF16BQ96L93 1317 aa14.56□□□□□ -0.08
NPHP4-204ENST00000460696 ADAMTS2O95450 1211 aa14.56□□□□□ -0.08
NPHP4-204ENST00000460696 STK31Q9BXU1 1019 aa14.56□□□□□ -0.08
NPHP4-204ENST00000460696 SPINK5Q9NQ38 1064 aaPredicted RBP14.56□□□□□ -0.08
NPHP4-204ENST00000460696 ZMYM3Q14202 1370 aa14.55□□□□□ -0.08
NPHP4-204ENST00000460696 TMPOP42166 694 aaKnown RBP14.55□□□□□ -0.08
NPHP4-204ENST00000460696 EVA1CP58658 441 aa14.55□□□□□ -0.08
NPHP4-204ENST00000460696 OS9Q13438 667 aaPredicted RBP14.55□□□□□ -0.08
NPHP4-204ENST00000460696 AMOTL2Q9Y2J4 779 aa14.55□□□□□ -0.08
NPHP4-204ENST00000460696 FBLN1P23142 703 aa14.55□□□□□ -0.08
NPHP4-204ENST00000460696 GSE1Q14687 1217 aa14.55□□□□□ -0.08
NPHP4-204ENST00000460696 THUMPD2Q9BTF0 503 aaKnown RBP14.55□□□□□ -0.08
NPHP4-204ENST00000460696 FOXO3O43524 673 aa14.54□□□□□ -0.08
NPHP4-204ENST00000460696 TRIM44Q96DX7 344 aaPredicted RBP14.54□□□□□ -0.08
NPHP4-204ENST00000460696 DMRT2Q9Y5R5 561 aa14.54□□□□□ -0.08
NPHP4-204ENST00000460696 NKTRP30414 1462 aaKnown RBP14.54□□□□□ -0.08
NPHP4-204ENST00000460696 GNAI1P63096 354 aa14.54□□□□□ -0.08
NPHP4-204ENST00000460696 C1orf115Q9H7X2 142 aa14.54□□□□□ -0.08
NPHP4-204ENST00000460696 TNRQ92752 1358 aa14.54□□□□□ -0.08
NPHP4-204ENST00000460696 ZNF518AQ6AHZ1 1483 aa14.53□□□□□ -0.08
NPHP4-204ENST00000460696 NECTIN2Q92692 538 aa14.53□□□□□ -0.08
NPHP4-204ENST00000460696 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.53□□□□□ -0.08
NPHP4-204ENST00000460696 GPRASP1Q5JY77 1395 aa14.53□□□□□ -0.08
NPHP4-204ENST00000460696 ASXL1Q8IXJ9 1541 aa14.53□□□□□ -0.08
NPHP4-204ENST00000460696 RRS1Q15050 365 aaKnown RBP14.52□□□□□ -0.08
NPHP4-204ENST00000460696 RNF123Q5XPI4 1314 aa14.52□□□□□ -0.08
NPHP4-204ENST00000460696 MVPQ14764 893 aaKnown RBP14.52□□□□□ -0.08
NPHP4-204ENST00000460696 SAMD9LQ8IVG5 1584 aa14.52□□□□□ -0.09
NPHP4-204ENST00000460696 KDM5CP41229 1560 aa14.51□□□□□ -0.09
NPHP4-204ENST00000460696 ATF7IPQ6VMQ6 1270 aa14.51□□□□□ -0.09
NPHP4-204ENST00000460696 IGHDP01880 384 aa14.51□□□□□ -0.09
NPHP4-204ENST00000460696 CFAP65Q6ZU64 1925 aaKnown RBP14.51□□□□□ -0.09
NPHP4-204ENST00000460696 FRAT2O75474 233 aaPredicted RBP14.51□□□□□ -0.09
NPHP4-204ENST00000460696 STRN4Q9NRL3 753 aa14.51□□□□□ -0.09
NPHP4-204ENST00000460696 ATAD2Q6PL18 1390 aa14.51□□□□□ -0.09
NPHP4-204ENST00000460696 C22orf23Q9BZE7 217 aa14.5□□□□□ -0.09
NPHP4-204ENST00000460696 SSH1Q8WYL5 1049 aa14.5□□□□□ -0.09
NPHP4-204ENST00000460696 ZNF330Q9Y3S2 320 aaPredicted RBP14.5□□□□□ -0.09
NPHP4-204ENST00000460696 AAMPQ13685 434 aa14.5□□□□□ -0.09
NPHP4-204ENST00000460696 ARHGEF5Q12774 1597 aa14.5□□□□□ -0.09
NPHP4-204ENST00000460696 API5Q9BZZ5 524 aaKnown RBP14.49□□□□□ -0.09
NPHP4-204ENST00000460696 RTEL1-TNFRSF6BF6WH68 1400 aa14.49□□□□□ -0.09
NPHP4-204ENST00000460696 HMMRO75330 724 aa14.48□□□□□ -0.09
NPHP4-204ENST00000460696 SULT6B1Q6IMI4 303 aa14.48□□□□□ -0.09
NPHP4-204ENST00000460696 PLA2R1Q13018 1463 aa14.48□□□□□ -0.09
NPHP4-204ENST00000460696 EIF2AK4Q9P2K8 1649 aaKnown RBP14.48□□□□□ -0.09
NPHP4-204ENST00000460696 NLRP6P59044 892 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms