RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 PUS7Q96PZ0 661 aaKnown RBP17.2■□□□□ 0.34
HDAC4-206ENST00000460235 TMEM94Q12767 1356 aa17.19■□□□□ 0.34
HDAC4-206ENST00000460235 ATF3P18847 181 aa17.19■□□□□ 0.34
HDAC4-206ENST00000460235 ARHGEF28Q8N1W1 1705 aaKnown RBP17.18■□□□□ 0.34
HDAC4-206ENST00000460235 CADPS2Q86UW7 1296 aa17.18■□□□□ 0.34
HDAC4-206ENST00000460235 MINK1Q8N4C8 1332 aaPredicted RBP17.18■□□□□ 0.34
HDAC4-206ENST00000460235 ADGRL3Q9HAR2 1447 aa17.17■□□□□ 0.34
HDAC4-206ENST00000460235 DCCP43146 1447 aa17.16■□□□□ 0.34
HDAC4-206ENST00000460235 WASLO00401 505 aaPredicted RBP17.16■□□□□ 0.34
HDAC4-206ENST00000460235 SRPK2P78362 688 aaKnown RBP17.15■□□□□ 0.34
HDAC4-206ENST00000460235 TESK2Q96S53 571 aa17.15■□□□□ 0.34
HDAC4-206ENST00000460235 LRRC7Q96NW7 1537 aa17.15■□□□□ 0.34
HDAC4-206ENST00000460235 PLEKHH1Q9ULM0 1364 aa17.15■□□□□ 0.34
HDAC4-206ENST00000460235 CDK19Q9BWU1 502 aa17.13■□□□□ 0.33
HDAC4-206ENST00000460235 QRICH2Q9H0J4 1663 aa17.13■□□□□ 0.33
HDAC4-206ENST00000460235 ATAD2Q6PL18 1390 aa17.13■□□□□ 0.33
HDAC4-206ENST00000460235 IQSEC2Q5JU85 1478 aa17.12■□□□□ 0.33
HDAC4-206ENST00000460235 ZNF316A6NFI3 1004 aaPredicted RBP17.12■□□□□ 0.33
HDAC4-206ENST00000460235 HIRIP3Q9BW71 556 aaPredicted RBP17.12■□□□□ 0.33
HDAC4-206ENST00000460235 LTBP4Q8N2S1 1624 aa17.11■□□□□ 0.33
HDAC4-206ENST00000460235 ADGRB2O60241 1585 aa17.11■□□□□ 0.33
HDAC4-206ENST00000460235 TOM1O60784 492 aa17.1■□□□□ 0.33
HDAC4-206ENST00000460235 NINLQ9Y2I6 1382 aa17.1■□□□□ 0.33
HDAC4-206ENST00000460235 ANKARQ7Z5J8 1434 aa17.1■□□□□ 0.33
HDAC4-206ENST00000460235 CCDC61Q9Y6R9 512 aa17.09■□□□□ 0.33
HDAC4-206ENST00000460235 CDC42BPGQ6DT37 1551 aa17.09■□□□□ 0.33
HDAC4-206ENST00000460235 STRCP1A6NGW2 1772 aa17.09■□□□□ 0.33
HDAC4-206ENST00000460235 CERKQ8TCT0 537 aa17.08■□□□□ 0.32
HDAC4-206ENST00000460235 RBM33Q96EV2 1170 aaKnown RBP17.08■□□□□ 0.32
HDAC4-206ENST00000460235 NUDT16Q96DE0 195 aaKnown RBP17.07■□□□□ 0.32
HDAC4-206ENST00000460235 POLR3GLQ9BT43 218 aa17.07■□□□□ 0.32
HDAC4-206ENST00000460235 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.05■□□□□ 0.32
HDAC4-206ENST00000460235 CABP2Q9NPB3 220 aa17.05■□□□□ 0.32
HDAC4-206ENST00000460235 TERF2IPQ9NYB0 399 aa17.05■□□□□ 0.32
HDAC4-206ENST00000460235 TULP4Q9NRJ4 1543 aa17.05■□□□□ 0.32
HDAC4-206ENST00000460235 TMC1Q8TDI8 760 aa17.04■□□□□ 0.32
HDAC4-206ENST00000460235 SLAIN2Q9P270 581 aa17.04■□□□□ 0.32
HDAC4-206ENST00000460235 DISP3Q9P2K9 1392 aa17.03■□□□□ 0.32
HDAC4-206ENST00000460235 HDGFL2Q7Z4V5 671 aaPredicted RBP17.03■□□□□ 0.32
HDAC4-206ENST00000460235 ZNF692Q9BU19 519 aaPredicted RBP17.03■□□□□ 0.32
HDAC4-206ENST00000460235 NALCNQ8IZF0 1738 aa17.03■□□□□ 0.32
HDAC4-206ENST00000460235 CCDC7Q96M83 1385 aa17.02■□□□□ 0.32
HDAC4-206ENST00000460235 KIF7Q2M1P5 1343 aa17.02■□□□□ 0.32
HDAC4-206ENST00000460235 ESCO1Q5FWF5 840 aa17.02■□□□□ 0.32
HDAC4-206ENST00000460235 NGDNQ8NEJ9 315 aaKnown RBP17.01■□□□□ 0.31
HDAC4-206ENST00000460235 PLEKHG3A1L390 1219 aa17■□□□□ 0.31
HDAC4-206ENST00000460235 NUTM2FA1L443 756 aa17■□□□□ 0.31
HDAC4-206ENST00000460235 PHF8Q9UPP1 1060 aa17■□□□□ 0.31
HDAC4-206ENST00000460235 FMN2Q9NZ56 1722 aa16.99■□□□□ 0.31
HDAC4-206ENST00000460235 UBAP1LF5GYI3 381 aa16.99■□□□□ 0.31
HDAC4-206ENST00000460235 CABP1Q9NZU7 370 aa16.99■□□□□ 0.31
HDAC4-206ENST00000460235 C1orf167Q5SNV9 1468 aa16.99■□□□□ 0.31
HDAC4-206ENST00000460235 WASHC2AQ641Q2 1341 aa16.98■□□□□ 0.31
HDAC4-206ENST00000460235 MST1RQ04912 1400 aa16.98■□□□□ 0.31
HDAC4-206ENST00000460235 PPIP5K1Q6PFW1 1433 aa16.98■□□□□ 0.31
HDAC4-206ENST00000460235 BRD4O60885 1362 aaPredicted RBP16.98■□□□□ 0.31
HDAC4-206ENST00000460235 ITSN1Q15811 1721 aa16.97■□□□□ 0.31
HDAC4-206ENST00000460235 PSME1Q06323 249 aa16.97■□□□□ 0.31
HDAC4-206ENST00000460235 XIRP1Q702N8 1843 aaKnown RBP16.97■□□□□ 0.31
HDAC4-206ENST00000460235 ATP7BP35670 1465 aa16.97■□□□□ 0.31
HDAC4-206ENST00000460235 NPHP3Q7Z494 1330 aa16.96■□□□□ 0.31
HDAC4-206ENST00000460235 C11orf95C9JLR9 678 aaPredicted RBP16.96■□□□□ 0.31
HDAC4-206ENST00000460235 PRR36Q9H6K5 1346 aa16.96■□□□□ 0.3
HDAC4-206ENST00000460235 SLC12A5Q9H2X9 1139 aa16.95■□□□□ 0.3
HDAC4-206ENST00000460235 ANKRD36BQ8N2N9 1353 aa16.94■□□□□ 0.3
HDAC4-206ENST00000460235 KNSTRNQ9Y448 316 aa16.93■□□□□ 0.3
HDAC4-206ENST00000460235 KIF1AQ12756 1690 aa16.93■□□□□ 0.3
HDAC4-206ENST00000460235 ACEP12821 1306 aa16.93■□□□□ 0.3
HDAC4-206ENST00000460235 POLR3AO14802 1390 aaPredicted RBP16.92■□□□□ 0.3
HDAC4-206ENST00000460235 BRINP3Q76B58 766 aa16.92■□□□□ 0.3
HDAC4-206ENST00000460235 PMFBP1Q8TBY8 1022 aa16.92■□□□□ 0.3
HDAC4-206ENST00000460235 ORAI2Q96SN7 254 aa16.92■□□□□ 0.3
HDAC4-206ENST00000460235 SCAF1Q9H7N4 1312 aaKnown RBP16.92■□□□□ 0.3
HDAC4-206ENST00000460235 KTN1Q86UP2 1357 aaKnown RBP16.91■□□□□ 0.3
HDAC4-206ENST00000460235 PANK3Q9H999 370 aa16.91■□□□□ 0.3
HDAC4-206ENST00000460235 FOXO3O43524 673 aa16.9■□□□□ 0.3
HDAC4-206ENST00000460235 DDX10Q13206 875 aaKnown RBP16.9■□□□□ 0.3
HDAC4-206ENST00000460235 PIP4K2BP78356 416 aa16.89■□□□□ 0.29
HDAC4-206ENST00000460235 CGNL1Q0VF96 1302 aa16.89■□□□□ 0.29
HDAC4-206ENST00000460235 TTC21AQ8NDW8 1320 aa16.89■□□□□ 0.29
HDAC4-206ENST00000460235 CPSF1Q10570 1443 aaKnown RBP16.88■□□□□ 0.29
HDAC4-206ENST00000460235 KRT28Q7Z3Y7 464 aa16.88■□□□□ 0.29
HDAC4-206ENST00000460235 USP32Q8NFA0 1604 aa16.88■□□□□ 0.29
HDAC4-206ENST00000460235 TOPAZ1Q8N9V7 1692 aa16.88■□□□□ 0.29
HDAC4-206ENST00000460235 EDC4Q6P2E9 1401 aaKnown RBP16.87■□□□□ 0.29
HDAC4-206ENST00000460235 PAK3O75914 559 aaPredicted RBP16.86■□□□□ 0.29
HDAC4-206ENST00000460235 LRRC59Q96AG4 307 aaKnown RBP16.86■□□□□ 0.29
HDAC4-206ENST00000460235 A0A1W2PP64 1363 aa16.86■□□□□ 0.29
HDAC4-206ENST00000460235 SBNO1A3KN83 1393 aa16.85■□□□□ 0.29
HDAC4-206ENST00000460235 USP6P35125 1406 aa16.85■□□□□ 0.29
HDAC4-206ENST00000460235 NSD2O96028 1365 aa16.84■□□□□ 0.29
HDAC4-206ENST00000460235 RGPD8O14715 1765 aaPredicted RBP16.84■□□□□ 0.29
HDAC4-206ENST00000460235 ARHGEF10O15013 1369 aa16.83■□□□□ 0.28
HDAC4-206ENST00000460235 SOS2Q07890 1332 aaPredicted RBP16.83■□□□□ 0.28
HDAC4-206ENST00000460235 TTC21BQ7Z4L5 1316 aa16.83■□□□□ 0.28
HDAC4-206ENST00000460235 NLRP13Q86W25 1043 aa16.82■□□□□ 0.28
HDAC4-206ENST00000460235 ABTB2Q8N961 1025 aa16.82■□□□□ 0.28
HDAC4-206ENST00000460235 NSD3Q9BZ95 1437 aa16.81■□□□□ 0.28
HDAC4-206ENST00000460235 NPC1L1Q9UHC9 1359 aa16.81■□□□□ 0.28
HDAC4-206ENST00000460235 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms