RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 CDK12Q9NYV4 1490 aaPredicted RBP27.16■■□□□ 1.94
HOXD3-204ENST00000459979 PRAG1Q86YV5 1406 aa27.16■■□□□ 1.94
HOXD3-204ENST00000459979 ADAMTS2O95450 1211 aa27.15■■□□□ 1.94
HOXD3-204ENST00000459979 QTRT2Q9H974 415 aaKnown RBP27.12■■□□□ 1.93
HOXD3-204ENST00000459979 RGS12O14924 1447 aa27.12■■□□□ 1.93
HOXD3-204ENST00000459979 PIK3C2GO75747 1445 aa27.12■■□□□ 1.93
HOXD3-204ENST00000459979 SOS2Q07890 1332 aaPredicted RBP27.12■■□□□ 1.93
HOXD3-204ENST00000459979 NRXN1Q9ULB1 1477 aa27.12■■□□□ 1.93
HOXD3-204ENST00000459979 MYOM2P54296 1465 aa27.11■■□□□ 1.93
HOXD3-204ENST00000459979 NGLY1Q96IV0 654 aa27.09■■□□□ 1.93
HOXD3-204ENST00000459979 CDC42BPGQ6DT37 1551 aa27.08■■□□□ 1.93
HOXD3-204ENST00000459979 RBM6P78332 1123 aaKnown RBP27.07■■□□□ 1.92
HOXD3-204ENST00000459979 STAC3Q96MF2 364 aa27.06■■□□□ 1.92
HOXD3-204ENST00000459979 STK26Q9P289 416 aa27.06■■□□□ 1.92
HOXD3-204ENST00000459979 COL22A1Q8NFW1 1626 aaPredicted RBP27.05■■□□□ 1.92
HOXD3-204ENST00000459979 C14orf93Q9H972 538 aaKnown RBP27.04■■□□□ 1.92
HOXD3-204ENST00000459979 ESCO1Q5FWF5 840 aa27.03■■□□□ 1.92
HOXD3-204ENST00000459979 KNDC1Q76NI1 1749 aa27.02■■□□□ 1.92
HOXD3-204ENST00000459979 TECPR2O15040 1411 aa27.02■■□□□ 1.92
HOXD3-204ENST00000459979 NUTM2FA1L443 756 aa27.02■■□□□ 1.92
HOXD3-204ENST00000459979 WAPLQ7Z5K2 1190 aa27.02■■□□□ 1.92
HOXD3-204ENST00000459979 XPCQ01831 940 aaPredicted RBP27.01■■□□□ 1.91
HOXD3-204ENST00000459979 TRIM26Q12899 539 aaPredicted RBP27.01■■□□□ 1.91
HOXD3-204ENST00000459979 PXDNQ92626 1479 aa27■■□□□ 1.91
HOXD3-204ENST00000459979 LRPPRCP42704 1394 aaKnown RBP27■■□□□ 1.91
HOXD3-204ENST00000459979 ABCC11Q96J66 1382 aa27■■□□□ 1.91
HOXD3-204ENST00000459979 MARF1Q9Y4F3 1742 aaKnown RBP27■■□□□ 1.91
HOXD3-204ENST00000459979 TMEM132EQ6IEE7 984 aa27■■□□□ 1.91
HOXD3-204ENST00000459979 USP21Q9UK80 565 aa27■■□□□ 1.91
HOXD3-204ENST00000459979 PLEKHH1Q9ULM0 1364 aa26.99■■□□□ 1.91
HOXD3-204ENST00000459979 NPHP3Q7Z494 1330 aa26.98■■□□□ 1.91
HOXD3-204ENST00000459979 DHX57Q6P158 1386 aaKnown RBP26.97■■□□□ 1.91
HOXD3-204ENST00000459979 FMN2Q9NZ56 1722 aa26.97■■□□□ 1.91
HOXD3-204ENST00000459979 FOXO3O43524 673 aa26.97■■□□□ 1.91
HOXD3-204ENST00000459979 DCAF11Q8TEB1 546 aa26.96■■□□□ 1.91
HOXD3-204ENST00000459979 CFAP70Q5T0N1 1121 aa26.95■■□□□ 1.9
HOXD3-204ENST00000459979 SIRT1Q96EB6 747 aa26.95■■□□□ 1.9
HOXD3-204ENST00000459979 YTHDC2Q9H6S0 1430 aaKnown RBP26.95■■□□□ 1.9
HOXD3-204ENST00000459979 RGPD8O14715 1765 aaPredicted RBP26.94■■□□□ 1.9
HOXD3-204ENST00000459979 FNBP4Q8N3X1 1017 aaPredicted RBP26.93■■□□□ 1.9
HOXD3-204ENST00000459979 TRPC5Q9UL62 973 aaPredicted RBP26.93■■□□□ 1.9
HOXD3-204ENST00000459979 ATRNO75882 1429 aa26.92■■□□□ 1.9
HOXD3-204ENST00000459979 KDM2AQ9Y2K7 1162 aa26.9■■□□□ 1.9
HOXD3-204ENST00000459979 KIF1AQ12756 1690 aa26.89■■□□□ 1.89
HOXD3-204ENST00000459979 ADGRB1O14514 1584 aa26.88■■□□□ 1.89
HOXD3-204ENST00000459979 BCL9LQ86UU0 1499 aa26.87■■□□□ 1.89
HOXD3-204ENST00000459979 ATAD2Q6PL18 1390 aa26.86■■□□□ 1.89
HOXD3-204ENST00000459979 DLC1Q96QB1 1528 aa26.84■■□□□ 1.89
HOXD3-204ENST00000459979 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.82■■□□□ 1.88
HOXD3-204ENST00000459979 SPATA31A3Q5VYP0 1347 aa26.81■■□□□ 1.88
HOXD3-204ENST00000459979 SAFB2Q14151 953 aaKnown RBP eCLIP26.8■■□□□ 1.88
HOXD3-204ENST00000459979 KRT28Q7Z3Y7 464 aa26.79■■□□□ 1.88
HOXD3-204ENST00000459979 USP32Q8NFA0 1604 aa26.79■■□□□ 1.88
HOXD3-204ENST00000459979 PLEKHG5O94827 1062 aa26.78■■□□□ 1.88
HOXD3-204ENST00000459979 KIAA1210Q9ULL0 1709 aa26.78■■□□□ 1.88
HOXD3-204ENST00000459979 SIN3AQ96ST3 1273 aa26.77■■□□□ 1.88
HOXD3-204ENST00000459979 GLI3P10071 1580 aa26.76■■□□□ 1.87
HOXD3-204ENST00000459979 GJD4Q96KN9 370 aaPredicted RBP26.76■■□□□ 1.87
HOXD3-204ENST00000459979 PRAM1Q96QH2 718 aa26.75■■□□□ 1.87
HOXD3-204ENST00000459979 PHF8Q9UPP1 1060 aa26.75■■□□□ 1.87
HOXD3-204ENST00000459979 ABCA3Q99758 1704 aa26.75■■□□□ 1.87
HOXD3-204ENST00000459979 SLIT2O94813 1529 aa26.75■■□□□ 1.87
HOXD3-204ENST00000459979 BRWD3Q6RI45 1802 aa26.74■■□□□ 1.87
HOXD3-204ENST00000459979 L3MBTL2Q969R5 705 aa26.74■■□□□ 1.87
HOXD3-204ENST00000459979 TNS3Q68CZ2 1445 aa26.73■■□□□ 1.87
HOXD3-204ENST00000459979 CABLES1Q8TDN4 633 aa26.73■■□□□ 1.87
HOXD3-204ENST00000459979 RALGAPBQ86X10 1494 aa26.73■■□□□ 1.87
HOXD3-204ENST00000459979 PLCH1Q4KWH8 1693 aa26.73■■□□□ 1.87
HOXD3-204ENST00000459979 UNC5CLQ8IV45 518 aa26.72■■□□□ 1.87
HOXD3-204ENST00000459979 TRAK1Q9UPV9 953 aa26.72■■□□□ 1.87
HOXD3-204ENST00000459979 POGKQ9P215 609 aa26.71■■□□□ 1.87
HOXD3-204ENST00000459979 HAP1P54257 671 aaPredicted RBP26.7■■□□□ 1.86
HOXD3-204ENST00000459979 EP400Q96L91 3159 aa26.69■■□□□ 1.86
HOXD3-204ENST00000459979 NEUROD1Q13562 356 aa26.68■■□□□ 1.86
HOXD3-204ENST00000459979 LMOD2Q6P5Q4 547 aa26.68■■□□□ 1.86
HOXD3-204ENST00000459979 ADGRB2O60241 1585 aa26.67■■□□□ 1.86
HOXD3-204ENST00000459979 PSME1Q06323 249 aa26.67■■□□□ 1.86
HOXD3-204ENST00000459979 PMFBP1Q8TBY8 1022 aa26.67■■□□□ 1.86
HOXD3-204ENST00000459979 NWD2Q9ULI1 1742 aa26.66■■□□□ 1.86
HOXD3-204ENST00000459979 ARHGEF28Q8N1W1 1705 aaKnown RBP26.65■■□□□ 1.86
HOXD3-204ENST00000459979 HIRIP3Q9BW71 556 aaPredicted RBP26.65■■□□□ 1.86
HOXD3-204ENST00000459979 SBNO1A3KN83 1393 aa26.65■■□□□ 1.86
HOXD3-204ENST00000459979 TRPM3Q9HCF6 1732 aaPredicted RBP26.65■■□□□ 1.86
HOXD3-204ENST00000459979 NBPF1Q3BBV0 1214 aa26.64■■□□□ 1.86
HOXD3-204ENST00000459979 ANKARQ7Z5J8 1434 aa26.63■■□□□ 1.85
HOXD3-204ENST00000459979 MINK1Q8N4C8 1332 aaPredicted RBP26.61■■□□□ 1.85
HOXD3-204ENST00000459979 ARHGEF10O15013 1369 aa26.6■■□□□ 1.85
HOXD3-204ENST00000459979 ZRANB1Q9UGI0 708 aa26.6■■□□□ 1.85
HOXD3-204ENST00000459979 CCDC125Q86Z20 511 aa26.59■■□□□ 1.85
HOXD3-204ENST00000459979 CCDC9Q9Y3X0 531 aaKnown RBP26.59■■□□□ 1.85
HOXD3-204ENST00000459979 ALS2Q96Q42 1657 aa26.59■■□□□ 1.85
HOXD3-204ENST00000459979 VPS72Q15906 364 aa26.58■■□□□ 1.85
HOXD3-204ENST00000459979 SEPT12Q8IYM1 358 aa26.58■■□□□ 1.85
HOXD3-204ENST00000459979 NRAPQ86VF7 1730 aa26.58■■□□□ 1.85
HOXD3-204ENST00000459979 PRR36Q9H6K5 1346 aa26.58■■□□□ 1.85
HOXD3-204ENST00000459979 EIF3AQ14152 1382 aaKnown RBP26.57■■□□□ 1.84
HOXD3-204ENST00000459979 FAM83GA6ND36 823 aa26.56■■□□□ 1.84
HOXD3-204ENST00000459979 WASLO00401 505 aaPredicted RBP26.56■■□□□ 1.84
HOXD3-204ENST00000459979 TRPM1Q7Z4N2 1603 aa26.56■■□□□ 1.84
HOXD3-204ENST00000459979 BLMP54132 1417 aaPredicted RBP26.56■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms