RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 FAM161AQ3B820 660 aa11.08□□□□□ -0.64
VPS50-208ENST00000458707 CHD1O14646 1710 aa11.08□□□□□ -0.64
VPS50-208ENST00000458707 C8orf34Q49A92 452 aa11.08□□□□□ -0.64
VPS50-208ENST00000458707 AMER1Q5JTC6 1135 aaPredicted RBP11.08□□□□□ -0.64
VPS50-208ENST00000458707 SKAP1Q86WV1 359 aa11.08□□□□□ -0.64
VPS50-208ENST00000458707 TRMT2AQ8IZ69 625 aaKnown RBP11.08□□□□□ -0.64
VPS50-208ENST00000458707 CLTCL1P53675 1640 aa11.07□□□□□ -0.64
VPS50-208ENST00000458707 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.07□□□□□ -0.64
VPS50-208ENST00000458707 SCAF11Q99590 1463 aaKnown RBP11.07□□□□□ -0.64
VPS50-208ENST00000458707 TET3O43151 1660 aa11.07□□□□□ -0.64
VPS50-208ENST00000458707 GOLGA2Q08379 1002 aa11.06□□□□□ -0.64
VPS50-208ENST00000458707 GSE1Q14687 1217 aa11.06□□□□□ -0.64
VPS50-208ENST00000458707 NFKBIBQ15653 356 aa11.06□□□□□ -0.64
VPS50-208ENST00000458707 STAG3Q9UJ98 1225 aa11.06□□□□□ -0.64
VPS50-208ENST00000458707 IFT172Q9UG01 1749 aa11.06□□□□□ -0.64
VPS50-208ENST00000458707 ABCC1P33527 1531 aa11.06□□□□□ -0.64
VPS50-208ENST00000458707 SLFN5Q08AF3 891 aa11.06□□□□□ -0.64
VPS50-208ENST00000458707 KNSTRNQ9Y448 316 aa11.06□□□□□ -0.64
VPS50-208ENST00000458707 NKTRP30414 1462 aaKnown RBP11.06□□□□□ -0.64
VPS50-208ENST00000458707 WDR43Q15061 677 aaKnown RBP eCLIP11.05□□□□□ -0.64
VPS50-208ENST00000458707 ZNF579Q8NAF0 562 aaKnown RBP11.05□□□□□ -0.64
VPS50-208ENST00000458707 STAC3Q96MF2 364 aa11.05□□□□□ -0.64
VPS50-208ENST00000458707 MYO3AQ8NEV4 1616 aa11.04□□□□□ -0.64
VPS50-208ENST00000458707 CDCA8Q53HL2 280 aa11.04□□□□□ -0.64
VPS50-208ENST00000458707 KIF1BO60333 1816 aa11.04□□□□□ -0.64
VPS50-208ENST00000458707 PTPRTO14522 1441 aa11.04□□□□□ -0.64
VPS50-208ENST00000458707 SHPRHQ149N8 1683 aa11.03□□□□□ -0.64
VPS50-208ENST00000458707 MAP3K4Q9Y6R4 1608 aa11.02□□□□□ -0.65
VPS50-208ENST00000458707 NGEFQ8N5V2 710 aa11.02□□□□□ -0.65
VPS50-208ENST00000458707 CREBZFQ9NS37 354 aa11.02□□□□□ -0.65
VPS50-208ENST00000458707 NINLQ9Y2I6 1382 aa11.02□□□□□ -0.65
VPS50-208ENST00000458707 VWDEQ8N2E2 1590 aa11.02□□□□□ -0.65
VPS50-208ENST00000458707 PLCH2O75038 1416 aa11.01□□□□□ -0.65
VPS50-208ENST00000458707 ZCCHC11Q5TAX3 1644 aaKnown RBP11.01□□□□□ -0.65
VPS50-208ENST00000458707 PDIA4P13667 645 aaKnown RBP11.01□□□□□ -0.65
VPS50-208ENST00000458707 PDE4CQ08493 712 aa11.01□□□□□ -0.65
VPS50-208ENST00000458707 GLIPR1L2Q4G1C9 344 aa11.01□□□□□ -0.65
VPS50-208ENST00000458707 ABCA6Q8N139 1617 aa11.01□□□□□ -0.65
VPS50-208ENST00000458707 ZC3H13Q5T200 1668 aaKnown RBP11□□□□□ -0.65
VPS50-208ENST00000458707 ZFYVE16Q7Z3T8 1539 aa11□□□□□ -0.65
VPS50-208ENST00000458707 ARAP3Q8WWN8 1544 aa11□□□□□ -0.65
VPS50-208ENST00000458707 RTEL1-TNFRSF6BF6WH68 1400 aa10.99□□□□□ -0.65
VPS50-208ENST00000458707 SLC4A3P48751 1232 aa10.99□□□□□ -0.65
VPS50-208ENST00000458707 FGD1P98174 961 aa10.99□□□□□ -0.65
VPS50-208ENST00000458707 FRAT1Q92837 279 aaPredicted RBP10.99□□□□□ -0.65
VPS50-208ENST00000458707 HECW2Q9P2P5 1572 aa10.99□□□□□ -0.65
VPS50-208ENST00000458707 MYOM2P54296 1465 aa10.99□□□□□ -0.65
VPS50-208ENST00000458707 E9PSI1 815 aa10.98□□□□□ -0.65
VPS50-208ENST00000458707 DCBLD2Q96PD2 775 aa10.98□□□□□ -0.65
VPS50-208ENST00000458707 ERVK-7P63135 1459 aa10.98□□□□□ -0.65
VPS50-208ENST00000458707 PDE3AQ14432 1141 aa10.98□□□□□ -0.65
VPS50-208ENST00000458707 USP19O94966 1318 aa10.97□□□□□ -0.65
VPS50-208ENST00000458707 INO80Q9ULG1 1556 aaPredicted RBP10.97□□□□□ -0.65
VPS50-208ENST00000458707 USP32Q8NFA0 1604 aa10.97□□□□□ -0.65
VPS50-208ENST00000458707 RTN4Q9NQC3 1192 aaKnown RBP10.97□□□□□ -0.65
VPS50-208ENST00000458707 ZRANB1Q9UGI0 708 aa10.97□□□□□ -0.65
VPS50-208ENST00000458707 BRPF3Q9ULD4 1205 aa10.97□□□□□ -0.65
VPS50-208ENST00000458707 NLRP1Q9C000 1473 aa10.97□□□□□ -0.65
VPS50-208ENST00000458707 CGNL1Q0VF96 1302 aa10.97□□□□□ -0.65
VPS50-208ENST00000458707 ZMYM3Q14202 1370 aa10.97□□□□□ -0.65
VPS50-208ENST00000458707 MROH2AA6NES4 1674 aa10.96□□□□□ -0.65
VPS50-208ENST00000458707 TRAPPC8Q9Y2L5 1435 aa10.96□□□□□ -0.66
VPS50-208ENST00000458707 APAF1O14727 1248 aa10.95□□□□□ -0.66
VPS50-208ENST00000458707 RGS3P49796 1198 aa10.95□□□□□ -0.66
VPS50-208ENST00000458707 MAPK8IP3Q9UPT6 1336 aa10.95□□□□□ -0.66
VPS50-208ENST00000458707 POLR3AO14802 1390 aaPredicted RBP10.95□□□□□ -0.66
VPS50-208ENST00000458707 SETBP1Q9Y6X0 1596 aa10.95□□□□□ -0.66
VPS50-208ENST00000458707 MROH1Q8NDA8 1641 aa10.95□□□□□ -0.66
VPS50-208ENST00000458707 FRAT2O75474 233 aaPredicted RBP10.95□□□□□ -0.66
VPS50-208ENST00000458707 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.95□□□□□ -0.66
VPS50-208ENST00000458707 SBNO2Q9Y2G9 1366 aa10.95□□□□□ -0.66
VPS50-208ENST00000458707 UHRF1BP1LA0JNW5 1464 aa10.94□□□□□ -0.66
VPS50-208ENST00000458707 BCAR3O75815 825 aa10.94□□□□□ -0.66
VPS50-208ENST00000458707 IGHDP01880 384 aa10.94□□□□□ -0.66
VPS50-208ENST00000458707 CCDC146Q8IYE0 955 aa10.94□□□□□ -0.66
VPS50-208ENST00000458707 IQSEC2Q5JU85 1478 aa10.94□□□□□ -0.66
VPS50-208ENST00000458707 NRXN1Q9ULB1 1477 aa10.94□□□□□ -0.66
VPS50-208ENST00000458707 AAMPQ13685 434 aa10.93□□□□□ -0.66
VPS50-208ENST00000458707 EFCAB2Q5VUJ9 269 aa10.93□□□□□ -0.66
VPS50-208ENST00000458707 ZMYND15Q9H091 742 aa10.93□□□□□ -0.66
VPS50-208ENST00000458707 QRICH2Q9H0J4 1663 aa10.93□□□□□ -0.66
VPS50-208ENST00000458707 ABCA9Q8IUA7 1624 aa10.93□□□□□ -0.66
VPS50-208ENST00000458707 PPLO60437 1756 aa10.93□□□□□ -0.66
VPS50-208ENST00000458707 ATP7AQ04656 1500 aa10.92□□□□□ -0.66
VPS50-208ENST00000458707 CLUAP1Q96AJ1 413 aa10.92□□□□□ -0.66
VPS50-208ENST00000458707 CENPJQ9HC77 1338 aaPredicted RBP10.91□□□□□ -0.66
VPS50-208ENST00000458707 SPDYE4A6NLX3 237 aa10.91□□□□□ -0.66
VPS50-208ENST00000458707 EFCAB6Q5THR3 1501 aa10.9□□□□□ -0.66
VPS50-208ENST00000458707 WWC1Q8IX03 1113 aa10.9□□□□□ -0.66
VPS50-208ENST00000458707 CARD14Q9BXL6 1004 aa10.9□□□□□ -0.66
VPS50-208ENST00000458707 BECN1Q14457 450 aa10.89□□□□□ -0.67
VPS50-208ENST00000458707 PPRC1Q5VV67 1664 aaKnown RBP10.89□□□□□ -0.67
VPS50-208ENST00000458707 KANK1Q14678 1352 aa10.89□□□□□ -0.67
VPS50-208ENST00000458707 SPAG9O60271 1321 aaKnown RBP10.89□□□□□ -0.67
VPS50-208ENST00000458707 FAM43AQ8N2R8 423 aa10.89□□□□□ -0.67
VPS50-208ENST00000458707 ADGRB2O60241 1585 aa10.88□□□□□ -0.67
VPS50-208ENST00000458707 UGGT1Q9NYU2 1555 aa10.88□□□□□ -0.67
VPS50-208ENST00000458707 SEC24BO95487 1268 aa10.88□□□□□ -0.67
VPS50-208ENST00000458707 KLHL34Q8N239 644 aa10.88□□□□□ -0.67
VPS50-208ENST00000458707 PMFBP1Q8TBY8 1022 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms