RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ADCY10Q96PN6 1610 aa6.6□□□□□ -1.35
CCDC88A-209ENST00000456975 NUP160Q12769 1436 aa6.6□□□□□ -1.35
CCDC88A-209ENST00000456975 WRNQ14191 1432 aaPredicted RBP eCLIP6.6□□□□□ -1.35
CCDC88A-209ENST00000456975 CERS3Q8IU89 383 aa6.6□□□□□ -1.35
CCDC88A-209ENST00000456975 ADAMTS19Q8TE59 1207 aa6.6□□□□□ -1.35
CCDC88A-209ENST00000456975 CWC22Q9HCG8 908 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-209ENST00000456975 ABCA10Q8WWZ4 1543 aa6.59□□□□□ -1.35
CCDC88A-209ENST00000456975 TOP2BQ02880 1626 aa6.59□□□□□ -1.35
CCDC88A-209ENST00000456975 BIVM-ERCC5R4GMW8 1640 aa6.59□□□□□ -1.35
CCDC88A-209ENST00000456975 BANK1Q8NDB2 785 aa6.59□□□□□ -1.35
CCDC88A-209ENST00000456975 BOLA1Q9Y3E2 137 aa6.59□□□□□ -1.35
CCDC88A-209ENST00000456975 EN1Q05925 392 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-209ENST00000456975 PIP4P2Q8N4L2 257 aa6.58□□□□□ -1.36
CCDC88A-209ENST00000456975 TMEM121BQ9BXQ6 578 aaPredicted RBP6.58□□□□□ -1.36
CCDC88A-209ENST00000456975 PRDM16Q9HAZ2 1276 aa6.58□□□□□ -1.36
CCDC88A-209ENST00000456975 PPRC1Q5VV67 1664 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-209ENST00000456975 RUSC2Q8N2Y8 1516 aa6.57□□□□□ -1.36
CCDC88A-209ENST00000456975 PRG4Q92954 1404 aaPredicted RBP6.57□□□□□ -1.36
CCDC88A-209ENST00000456975 TIE1P35590 1138 aa6.57□□□□□ -1.36
CCDC88A-209ENST00000456975 QPCTQ16769 361 aa6.57□□□□□ -1.36
CCDC88A-209ENST00000456975 HDGFL1Q5TGJ6 251 aa6.57□□□□□ -1.36
CCDC88A-209ENST00000456975 CHMP4BQ9H444 224 aaKnown RBP6.57□□□□□ -1.36
CCDC88A-209ENST00000456975 IVNS1ABPQ9Y6Y0 642 aa6.57□□□□□ -1.36
CCDC88A-209ENST00000456975 CC2D2BQ6DHV5 1058 aa6.56□□□□□ -1.36
CCDC88A-209ENST00000456975 PBXIP1Q96AQ6 731 aa6.56□□□□□ -1.36
CCDC88A-209ENST00000456975 BRD1O95696 1058 aa6.56□□□□□ -1.36
CCDC88A-209ENST00000456975 TMEM259Q4ZIN3 620 aa6.56□□□□□ -1.36
CCDC88A-209ENST00000456975 RIC3Q7Z5B4 369 aa6.56□□□□□ -1.36
CCDC88A-209ENST00000456975 PLCD4Q9BRC7 762 aa6.56□□□□□ -1.36
CCDC88A-209ENST00000456975 CFAP70Q5T0N1 1121 aa6.55□□□□□ -1.36
CCDC88A-209ENST00000456975 PADI6Q6TGC4 694 aa6.55□□□□□ -1.36
CCDC88A-209ENST00000456975 FTSJ3Q8IY81 847 aaKnown RBP6.55□□□□□ -1.36
CCDC88A-209ENST00000456975 KCNG1Q9UIX4 513 aa6.55□□□□□ -1.36
CCDC88A-209ENST00000456975 AP1G2O75843 785 aa6.54□□□□□ -1.36
CCDC88A-209ENST00000456975 CCDC27Q2M243 656 aa6.54□□□□□ -1.36
CCDC88A-209ENST00000456975 CDCA8Q53HL2 280 aa6.54□□□□□ -1.36
CCDC88A-209ENST00000456975 PPP2R2DQ66LE6 453 aa6.54□□□□□ -1.36
CCDC88A-209ENST00000456975 PXYLP1Q8TE99 480 aa6.54□□□□□ -1.36
CCDC88A-209ENST00000456975 FHAD1B1AJZ9 1412 aa6.54□□□□□ -1.36
CCDC88A-209ENST00000456975 GRIPAP1Q4V328 841 aa6.54□□□□□ -1.36
CCDC88A-209ENST00000456975 PCDHGA10Q9Y5H3 936 aa6.54□□□□□ -1.36
CCDC88A-209ENST00000456975 CUL7Q14999 1698 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 KCNA1Q09470 495 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 SPIRE2Q8WWL2 714 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 USP35Q9P2H5 1018 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 CSB-PGBD3P0DP91 1061 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 SRPK2P78362 688 aaKnown RBP6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 FAM43BQ6ZT52 329 aaPredicted RBP6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 WWC1Q8IX03 1113 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 FBXO41Q8TF61 875 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 PCDHB15Q9Y5E8 787 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 ADGRG1Q9Y653 693 aa6.53□□□□□ -1.36
CCDC88A-209ENST00000456975 UNCXA6NJT0 531 aa6.52□□□□□ -1.37
CCDC88A-209ENST00000456975 RTL5Q5HYW3 569 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-209ENST00000456975 ERICH3Q5RHP9 1530 aa6.52□□□□□ -1.37
CCDC88A-209ENST00000456975 NDUFV2P19404 249 aa6.52□□□□□ -1.37
CCDC88A-209ENST00000456975 ZNF526Q8TF50 670 aaPredicted RBP6.52□□□□□ -1.37
CCDC88A-209ENST00000456975 MOXD2PA6NHM9 499 aa6.51□□□□□ -1.37
CCDC88A-209ENST00000456975 G3V3G9 751 aa6.51□□□□□ -1.37
CCDC88A-209ENST00000456975 GALR2O43603 387 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-209ENST00000456975 OATP04181 439 aa6.51□□□□□ -1.37
CCDC88A-209ENST00000456975 PTMSP20962 102 aa6.51□□□□□ -1.37
CCDC88A-209ENST00000456975 IRX5P78411 483 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-209ENST00000456975 FAM177A1Q8N128 213 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-209ENST00000456975 PHF14O94880 888 aa6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 VAC14Q08AM6 782 aa6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 LMTK3Q96Q04 1460 aa6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 USP17L8P0C7I0 530 aa6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 ZNF710Q8N1W2 664 aa6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 SLAIN1Q8ND83 568 aa6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 CABLES1Q8TDN4 633 aa6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 PPP1R12CQ9BZL4 782 aa6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 ARID4BQ4LE39 1312 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-209ENST00000456975 LMOD1P29536 600 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 ATN1P54259 1190 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 SETQ01105 290 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 SND1Q7KZF4 910 aaKnown RBP eCLIP6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 GJD4Q96KN9 370 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 HMX1Q9NP08 348 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 USTQ9Y2C2 406 aa6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 MAP3K4Q9Y6R4 1608 aa6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 GLI2P10070 1586 aa6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 KIF21BO75037 1637 aa6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 PALM3A6NDB9 673 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 MCCP23508 829 aa6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 RSBN1LQ6PCB5 846 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 JPH4Q96JJ6 628 aa6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 OCEL1Q9H607 264 aa6.49□□□□□ -1.37
CCDC88A-209ENST00000456975 GPR37L1O60883 481 aa6.48□□□□□ -1.37
CCDC88A-209ENST00000456975 GTF2E1P29083 439 aaPredicted RBP6.48□□□□□ -1.37
CCDC88A-209ENST00000456975 CHRDL2Q6WN34 429 aa6.48□□□□□ -1.37
CCDC88A-209ENST00000456975 PTCD2Q8WV60 388 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-209ENST00000456975 PATL2C9JE40 543 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-209ENST00000456975 TMEM88BA6NKF7 163 aa6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 NUTM2BA6NNL0 878 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 NUTM2EB1AL46 878 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 SPTLC1O15269 473 aa6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 LILRB3O75022 631 aa6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 NUTM2DQ5VT03 806 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-209ENST00000456975 NUTM2AQ8IVF1 878 aaPredicted RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms