RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 WAPLQ7Z5K2 1190 aa15.44■□□□□ 0.06
SCN9A-205ENST00000454569 XRN1Q8IZH2 1706 aaKnown RBP15.43■□□□□ 0.06
SCN9A-205ENST00000454569 SAFB2Q14151 953 aaKnown RBP eCLIP15.43■□□□□ 0.06
SCN9A-205ENST00000454569 WASHC2AQ641Q2 1341 aa15.42■□□□□ 0.06
SCN9A-205ENST00000454569 ABCC11Q96J66 1382 aa15.42■□□□□ 0.06
SCN9A-205ENST00000454569 PRAM1Q96QH2 718 aa15.41■□□□□ 0.06
SCN9A-205ENST00000454569 AMOTL2Q9Y2J4 779 aa15.41■□□□□ 0.06
SCN9A-205ENST00000454569 ROBO2Q9HCK4 1378 aa15.41■□□□□ 0.06
SCN9A-205ENST00000454569 DISP3Q9P2K9 1392 aa15.41■□□□□ 0.06
SCN9A-205ENST00000454569 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.41■□□□□ 0.06
SCN9A-205ENST00000454569 CPS1P31327 1500 aa15.4■□□□□ 0.06
SCN9A-205ENST00000454569 DLC1Q96QB1 1528 aa15.4■□□□□ 0.06
SCN9A-205ENST00000454569 CENPJQ9HC77 1338 aaPredicted RBP15.4■□□□□ 0.06
SCN9A-205ENST00000454569 KIF7Q2M1P5 1343 aa15.39■□□□□ 0.05
SCN9A-205ENST00000454569 TECPR2O15040 1411 aa15.39■□□□□ 0.05
SCN9A-205ENST00000454569 KCNA6P17658 529 aa15.39■□□□□ 0.05
SCN9A-205ENST00000454569 RTN4Q9NQC3 1192 aaKnown RBP15.39■□□□□ 0.05
SCN9A-205ENST00000454569 EIF3AQ14152 1382 aaKnown RBP15.38■□□□□ 0.05
SCN9A-205ENST00000454569 CCDC7Q96M83 1385 aa15.38■□□□□ 0.05
SCN9A-205ENST00000454569 RBM33Q96EV2 1170 aaKnown RBP15.37■□□□□ 0.05
SCN9A-205ENST00000454569 MINK1Q8N4C8 1332 aaPredicted RBP15.37■□□□□ 0.05
SCN9A-205ENST00000454569 TULP4Q9NRJ4 1543 aa15.36■□□□□ 0.05
SCN9A-205ENST00000454569 POGKQ9P215 609 aa15.36■□□□□ 0.05
SCN9A-205ENST00000454569 PIK3R4Q99570 1358 aa15.35■□□□□ 0.05
SCN9A-205ENST00000454569 DDX10Q13206 875 aaKnown RBP15.35■□□□□ 0.05
SCN9A-205ENST00000454569 POLR3GLQ9BT43 218 aa15.35■□□□□ 0.05
SCN9A-205ENST00000454569 ZNF219Q9P2Y4 722 aaPredicted RBP15.35■□□□□ 0.05
SCN9A-205ENST00000454569 NWD1Q149M9 1564 aa15.34■□□□□ 0.05
SCN9A-205ENST00000454569 FAM135BQ49AJ0 1406 aa15.34■□□□□ 0.05
SCN9A-205ENST00000454569 SIRT1Q96EB6 747 aa15.34■□□□□ 0.05
SCN9A-205ENST00000454569 SBNO2Q9Y2G9 1366 aa15.34■□□□□ 0.05
SCN9A-205ENST00000454569 AMER1Q5JTC6 1135 aaPredicted RBP15.33■□□□□ 0.05
SCN9A-205ENST00000454569 MYOM1P52179 1685 aa15.33■□□□□ 0.04
SCN9A-205ENST00000454569 XIRP1Q702N8 1843 aaKnown RBP15.33■□□□□ 0.04
SCN9A-205ENST00000454569 TMF1P82094 1093 aa15.32■□□□□ 0.04
SCN9A-205ENST00000454569 RGPD8O14715 1765 aaPredicted RBP15.32■□□□□ 0.04
SCN9A-205ENST00000454569 PTCH1Q13635 1447 aa15.32■□□□□ 0.04
SCN9A-205ENST00000454569 NALCNQ8IZF0 1738 aa15.32■□□□□ 0.04
SCN9A-205ENST00000454569 CABP2Q9NPB3 220 aa15.3■□□□□ 0.04
SCN9A-205ENST00000454569 ZNF335Q9H4Z2 1342 aaPredicted RBP15.3■□□□□ 0.04
SCN9A-205ENST00000454569 CDK19Q9BWU1 502 aa15.28■□□□□ 0.04
SCN9A-205ENST00000454569 ADGRB2O60241 1585 aa15.27■□□□□ 0.03
SCN9A-205ENST00000454569 EVC2Q86UK5 1308 aa15.26■□□□□ 0.03
SCN9A-205ENST00000454569 USP32Q8NFA0 1604 aa15.26■□□□□ 0.03
SCN9A-205ENST00000454569 WASLO00401 505 aaPredicted RBP15.25■□□□□ 0.03
SCN9A-205ENST00000454569 DIEXFQ68CQ4 756 aaKnown RBP15.25■□□□□ 0.03
SCN9A-205ENST00000454569 PROSER2Q86WR7 435 aaPredicted RBP15.25■□□□□ 0.03
SCN9A-205ENST00000454569 PRR36Q9H6K5 1346 aa15.24■□□□□ 0.03
SCN9A-205ENST00000454569 NUTM2FA1L443 756 aa15.24■□□□□ 0.03
SCN9A-205ENST00000454569 SRPK2P78362 688 aaKnown RBP15.24■□□□□ 0.03
SCN9A-205ENST00000454569 FMN2Q9NZ56 1722 aa15.23■□□□□ 0.03
SCN9A-205ENST00000454569 NKTRP30414 1462 aaKnown RBP15.23■□□□□ 0.03
SCN9A-205ENST00000454569 SLC12A5Q9H2X9 1139 aa15.23■□□□□ 0.03
SCN9A-205ENST00000454569 TMEM94Q12767 1356 aa15.22■□□□□ 0.03
SCN9A-205ENST00000454569 LRRC7Q96NW7 1537 aa15.21■□□□□ 0.03
SCN9A-205ENST00000454569 PANK3Q9H999 370 aa15.21■□□□□ 0.03
SCN9A-205ENST00000454569 TOPAZ1Q8N9V7 1692 aa15.21■□□□□ 0.03
SCN9A-205ENST00000454569 ADGRL3Q9HAR2 1447 aa15.2■□□□□ 0.02
SCN9A-205ENST00000454569 CDCA8Q53HL2 280 aa15.2■□□□□ 0.02
SCN9A-205ENST00000454569 ATP7BP35670 1465 aa15.2■□□□□ 0.02
SCN9A-205ENST00000454569 SLC24A1O60721 1099 aa15.19■□□□□ 0.02
SCN9A-205ENST00000454569 TMC1Q8TDI8 760 aa15.19■□□□□ 0.02
SCN9A-205ENST00000454569 NUDT16Q96DE0 195 aaKnown RBP15.19■□□□□ 0.02
SCN9A-205ENST00000454569 CDC42BPGQ6DT37 1551 aa15.19■□□□□ 0.02
SCN9A-205ENST00000454569 LTBP4Q8N2S1 1624 aa15.19■□□□□ 0.02
SCN9A-205ENST00000454569 PUS7Q96PZ0 661 aaKnown RBP15.19■□□□□ 0.02
SCN9A-205ENST00000454569 CD163L1Q9NR16 1453 aa15.18■□□□□ 0.02
SCN9A-205ENST00000454569 PER1O15534 1290 aaPredicted RBP15.18■□□□□ 0.02
SCN9A-205ENST00000454569 CARD14Q9BXL6 1004 aa15.18■□□□□ 0.02
SCN9A-205ENST00000454569 CABP1Q9NZU7 370 aa15.18■□□□□ 0.02
SCN9A-205ENST00000454569 C14orf37Q86TY3 774 aa15.16■□□□□ 0.02
SCN9A-205ENST00000454569 AKAP12Q02952 1782 aa15.16■□□□□ 0.02
SCN9A-205ENST00000454569 ATAD2Q6PL18 1390 aa15.16■□□□□ 0.02
SCN9A-205ENST00000454569 CNGB1Q14028 1251 aaPredicted RBP15.15■□□□□ 0.02
SCN9A-205ENST00000454569 PPIP5K1Q6PFW1 1433 aa15.15■□□□□ 0.02
SCN9A-205ENST00000454569 ITSN1Q15811 1721 aa15.15■□□□□ 0.02
SCN9A-205ENST00000454569 MIER1Q8N108 512 aa15.15■□□□□ 0.02
SCN9A-205ENST00000454569 C19orf44Q9H6X5 657 aa15.14■□□□□ 0.01
SCN9A-205ENST00000454569 CCDC61Q9Y6R9 512 aa15.14■□□□□ 0.01
SCN9A-205ENST00000454569 A0A1W2PP64 1363 aa15.13■□□□□ 0.01
SCN9A-205ENST00000454569 PMFBP1Q8TBY8 1022 aa15.13■□□□□ 0.01
SCN9A-205ENST00000454569 MON2Q7Z3U7 1717 aa15.12■□□□□ 0.01
SCN9A-205ENST00000454569 NCOA3Q9Y6Q9 1424 aa15.12■□□□□ 0.01
SCN9A-205ENST00000454569 ORAI2Q96SN7 254 aa15.11■□□□□ 0.01
SCN9A-205ENST00000454569 RNF39Q9H2S5 420 aa15.11■□□□□ 0.01
SCN9A-205ENST00000454569 ANKRD36BQ8N2N9 1353 aa15.1■□□□□ 0.01
SCN9A-205ENST00000454569 MST1RQ04912 1400 aa15.1■□□□□ 0.01
SCN9A-205ENST00000454569 CPSF1Q10570 1443 aaKnown RBP15.1■□□□□ 0.01
SCN9A-205ENST00000454569 ANKARQ7Z5J8 1434 aa15.1■□□□□ 0.01
SCN9A-205ENST00000454569 PLEKHG3A1L390 1219 aa15.1■□□□□ 0.01
SCN9A-205ENST00000454569 MKRN4PQ13434 485 aaPredicted RBP15.09■□□□□ 0.01
SCN9A-205ENST00000454569 SPINK5Q9NQ38 1064 aaPredicted RBP15.09■□□□□ 0.01
SCN9A-205ENST00000454569 ACEP12821 1306 aa15.09■□□□□ 0.01
SCN9A-205ENST00000454569 NSD3Q9BZ95 1437 aa15.09■□□□□ 0.01
SCN9A-205ENST00000454569 C1orf167Q5SNV9 1468 aa15.09■□□□□ 0.01
SCN9A-205ENST00000454569 CC2D1BQ5T0F9 858 aaKnown RBP15.07■□□□□ 0
SCN9A-205ENST00000454569 MSH6P52701 1360 aa15.07■□□□□ 0
SCN9A-205ENST00000454569 NINLQ9Y2I6 1382 aa15.07■□□□□ 0
SCN9A-205ENST00000454569 KIF20BQ96Q89 1820 aa15.07■□□□□ 0
SCN9A-205ENST00000454569 NRKQ7Z2Y5 1582 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms