RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 ATF3P18847 181 aa40.1■■■■■ 4.01
SMARCC1-203ENST00000454240 ARHGEF28Q8N1W1 1705 aaKnown RBP40.08■■■■■ 4.01
SMARCC1-203ENST00000454240 PRAM1Q96QH2 718 aa40.07■■■■■ 4.01
SMARCC1-203ENST00000454240 SLAIN2Q9P270 581 aa40.06■■■■■ 4
SMARCC1-203ENST00000454240 SCAF1Q9H7N4 1312 aaKnown RBP40.05■■■■■ 4
SMARCC1-203ENST00000454240 POGKQ9P215 609 aa40.01■■■■■ 4
SMARCC1-203ENST00000454240 CDC42BPGQ6DT37 1551 aa40■■■■□ 3.99
SMARCC1-203ENST00000454240 ROCK2O75116 1388 aaKnown RBP39.99■■■■□ 3.99
SMARCC1-203ENST00000454240 MST1RQ04912 1400 aa39.98■■■■□ 3.99
SMARCC1-203ENST00000454240 ROBO1Q9Y6N7 1651 aa39.97■■■■□ 3.99
SMARCC1-203ENST00000454240 RALGAPBQ86X10 1494 aa39.97■■■■□ 3.99
SMARCC1-203ENST00000454240 GPRASP1Q5JY77 1395 aa39.97■■■■□ 3.99
SMARCC1-203ENST00000454240 SAFB2Q14151 953 aaKnown RBP eCLIP39.96■■■■□ 3.99
SMARCC1-203ENST00000454240 ADGRB2O60241 1585 aa39.9■■■■□ 3.98
SMARCC1-203ENST00000454240 FMN2Q9NZ56 1722 aa39.88■■■■□ 3.98
SMARCC1-203ENST00000454240 C1orf167Q5SNV9 1468 aa39.88■■■■□ 3.97
SMARCC1-203ENST00000454240 MINK1Q8N4C8 1332 aaPredicted RBP39.85■■■■□ 3.97
SMARCC1-203ENST00000454240 CARD11Q9BXL7 1154 aa39.84■■■■□ 3.97
SMARCC1-203ENST00000454240 HSPA1LP34931 641 aa39.83■■■■□ 3.97
SMARCC1-203ENST00000454240 BRINP3Q76B58 766 aa39.83■■■■□ 3.97
SMARCC1-203ENST00000454240 HIRIP3Q9BW71 556 aaPredicted RBP39.81■■■■□ 3.96
SMARCC1-203ENST00000454240 CENPJQ9HC77 1338 aaPredicted RBP39.81■■■■□ 3.96
SMARCC1-203ENST00000454240 QRICH2Q9H0J4 1663 aa39.8■■■■□ 3.96
SMARCC1-203ENST00000454240 RGPD8O14715 1765 aaPredicted RBP39.77■■■■□ 3.96
SMARCC1-203ENST00000454240 EIF3AQ14152 1382 aaKnown RBP39.75■■■■□ 3.95
SMARCC1-203ENST00000454240 NUTM2FA1L443 756 aa39.75■■■■□ 3.95
SMARCC1-203ENST00000454240 ORAI2Q96SN7 254 aa39.75■■■■□ 3.95
SMARCC1-203ENST00000454240 WASLO00401 505 aaPredicted RBP39.74■■■■□ 3.95
SMARCC1-203ENST00000454240 AHDC1Q5TGY3 1603 aaPredicted RBP39.73■■■■□ 3.95
SMARCC1-203ENST00000454240 PHLPP1O60346 1717 aa39.72■■■■□ 3.95
SMARCC1-203ENST00000454240 NHSL1Q5SYE7 1610 aa39.71■■■■□ 3.95
SMARCC1-203ENST00000454240 USP32Q8NFA0 1604 aa39.71■■■■□ 3.95
SMARCC1-203ENST00000454240 ANKARQ7Z5J8 1434 aa39.68■■■■□ 3.94
SMARCC1-203ENST00000454240 ESCO1Q5FWF5 840 aa39.68■■■■□ 3.94
SMARCC1-203ENST00000454240 TULP4Q9NRJ4 1543 aa39.67■■■■□ 3.94
SMARCC1-203ENST00000454240 CDK19Q9BWU1 502 aa39.64■■■■□ 3.94
SMARCC1-203ENST00000454240 COL16A1Q07092 1604 aaPredicted RBP39.64■■■■□ 3.94
SMARCC1-203ENST00000454240 PRR36Q9H6K5 1346 aa39.62■■■■□ 3.93
SMARCC1-203ENST00000454240 KIF1AQ12756 1690 aa39.61■■■■□ 3.93
SMARCC1-203ENST00000454240 SBNO2Q9Y2G9 1366 aa39.59■■■■□ 3.93
SMARCC1-203ENST00000454240 DDX17Q92841 729 aaKnown RBP39.59■■■■□ 3.93
SMARCC1-203ENST00000454240 ATP7BP35670 1465 aa39.56■■■■□ 3.92
SMARCC1-203ENST00000454240 ITSN1Q15811 1721 aa39.56■■■■□ 3.92
SMARCC1-203ENST00000454240 NUDT16Q96DE0 195 aaKnown RBP39.55■■■■□ 3.92
SMARCC1-203ENST00000454240 PHF8Q9UPP1 1060 aa39.55■■■■□ 3.92
SMARCC1-203ENST00000454240 EVC2Q86UK5 1308 aa39.53■■■■□ 3.92
SMARCC1-203ENST00000454240 USP47Q96K76 1375 aa39.53■■■■□ 3.92
SMARCC1-203ENST00000454240 NPHP3Q7Z494 1330 aa39.52■■■■□ 3.92
SMARCC1-203ENST00000454240 ST20-MTHFSA0A0A6YYL1 179 aa39.52■■■■□ 3.92
SMARCC1-203ENST00000454240 FOXO3O43524 673 aa39.52■■■■□ 3.92
SMARCC1-203ENST00000454240 SOS2Q07890 1332 aaPredicted RBP39.51■■■■□ 3.92
SMARCC1-203ENST00000454240 TOPAZ1Q8N9V7 1692 aa39.51■■■■□ 3.91
SMARCC1-203ENST00000454240 SRPK2P78362 688 aaKnown RBP39.5■■■■□ 3.91
SMARCC1-203ENST00000454240 CABP2Q9NPB3 220 aa39.49■■■■□ 3.91
SMARCC1-203ENST00000454240 PMFBP1Q8TBY8 1022 aa39.47■■■■□ 3.91
SMARCC1-203ENST00000454240 TESK2Q96S53 571 aa39.47■■■■□ 3.91
SMARCC1-203ENST00000454240 CCDC61Q9Y6R9 512 aa39.47■■■■□ 3.91
SMARCC1-203ENST00000454240 PXDNQ92626 1479 aa39.47■■■■□ 3.91
SMARCC1-203ENST00000454240 LRRC59Q96AG4 307 aaKnown RBP39.45■■■■□ 3.91
SMARCC1-203ENST00000454240 JCADQ9P266 1359 aa39.45■■■■□ 3.91
SMARCC1-203ENST00000454240 SHPRHQ149N8 1683 aa39.42■■■■□ 3.9
SMARCC1-203ENST00000454240 SLC24A1O60721 1099 aa39.4■■■■□ 3.9
SMARCC1-203ENST00000454240 PLEKHG3A1L390 1219 aa39.39■■■■□ 3.9
SMARCC1-203ENST00000454240 XPCQ01831 940 aaPredicted RBP39.39■■■■□ 3.9
SMARCC1-203ENST00000454240 KRT28Q7Z3Y7 464 aa39.39■■■■□ 3.9
SMARCC1-203ENST00000454240 PSME1Q06323 249 aa39.36■■■■□ 3.89
SMARCC1-203ENST00000454240 PPIP5K1Q6PFW1 1433 aa39.36■■■■□ 3.89
SMARCC1-203ENST00000454240 NGDNQ8NEJ9 315 aaKnown RBP39.35■■■■□ 3.89
SMARCC1-203ENST00000454240 POLR3AO14802 1390 aaPredicted RBP39.33■■■■□ 3.89
SMARCC1-203ENST00000454240 ATAD2Q6PL18 1390 aa39.33■■■■□ 3.89
SMARCC1-203ENST00000454240 PUS7Q96PZ0 661 aaKnown RBP39.32■■■■□ 3.89
SMARCC1-203ENST00000454240 EIF4G2P78344 907 aaKnown RBP eCLIP39.31■■■■□ 3.88
SMARCC1-203ENST00000454240 ACEP12821 1306 aa39.31■■■■□ 3.88
SMARCC1-203ENST00000454240 PNPLA6Q8IY17 1366 aa39.31■■■■□ 3.88
SMARCC1-203ENST00000454240 CABP1Q9NZU7 370 aa39.3■■■■□ 3.88
SMARCC1-203ENST00000454240 TRPM3Q9HCF6 1732 aaPredicted RBP39.3■■■■□ 3.88
SMARCC1-203ENST00000454240 SBNO1A3KN83 1393 aa39.29■■■■□ 3.88
SMARCC1-203ENST00000454240 SPATA31A6Q5VVP1 1343 aa39.28■■■■□ 3.88
SMARCC1-203ENST00000454240 SPATA31A3Q5VYP0 1347 aa39.28■■■■□ 3.88
SMARCC1-203ENST00000454240 TMF1P82094 1093 aa39.26■■■■□ 3.88
SMARCC1-203ENST00000454240 COL22A1Q8NFW1 1626 aaPredicted RBP39.25■■■■□ 3.87
SMARCC1-203ENST00000454240 HSPA5P11021 654 aaKnown RBP39.25■■■■□ 3.87
SMARCC1-203ENST00000454240 MED1Q15648 1581 aaPredicted RBP39.25■■■■□ 3.87
SMARCC1-203ENST00000454240 DISP3Q9P2K9 1392 aa39.24■■■■□ 3.87
SMARCC1-203ENST00000454240 TNS3Q68CZ2 1445 aa39.23■■■■□ 3.87
SMARCC1-203ENST00000454240 ALS2Q96Q42 1657 aa39.2■■■■□ 3.87
SMARCC1-203ENST00000454240 AKAP12Q02952 1782 aa39.19■■■■□ 3.86
SMARCC1-203ENST00000454240 LRP6O75581 1613 aa39.16■■■■□ 3.86
SMARCC1-203ENST00000454240 ARHGEF10O15013 1369 aa39.14■■■■□ 3.86
SMARCC1-203ENST00000454240 CDCA8Q53HL2 280 aa39.14■■■■□ 3.86
SMARCC1-203ENST00000454240 CPSF1Q10570 1443 aaKnown RBP39.14■■■■□ 3.86
SMARCC1-203ENST00000454240 BRD4O60885 1362 aaPredicted RBP39.12■■■■□ 3.85
SMARCC1-203ENST00000454240 TMC1Q8TDI8 760 aa39.12■■■■□ 3.85
SMARCC1-203ENST00000454240 ZNF692Q9BU19 519 aaPredicted RBP39.12■■■■□ 3.85
SMARCC1-203ENST00000454240 SLC12A5Q9H2X9 1139 aa39.12■■■■□ 3.85
SMARCC1-203ENST00000454240 USP6P35125 1406 aa39.12■■■■□ 3.85
SMARCC1-203ENST00000454240 NUTM2BA6NNL0 878 aaPredicted RBP39.11■■■■□ 3.85
SMARCC1-203ENST00000454240 NUTM2EB1AL46 878 aaPredicted RBP39.11■■■■□ 3.85
SMARCC1-203ENST00000454240 PAK3O75914 559 aaPredicted RBP39.11■■■■□ 3.85
SMARCC1-203ENST00000454240 NUTM2AQ8IVF1 878 aaPredicted RBP39.11■■■■□ 3.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms