RNA–Protein interactions for RNA: ENST00000453341.1

TNFRSF25-208, Transcript of TNF receptor superfamily member 25, human

TSL 1 (best)

Gene TNFRSF25, Length 798 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF25-208	ENST00000453341	HFM1	A2PYH4	1435 aa		33.15	■■■□□ 2.9
TNFRSF25-208	ENST00000453341	ZRANB1	Q9UGI0	708 aa		33.15	■■■□□ 2.9
TNFRSF25-208	ENST00000453341	PXDN	Q92626	1479 aa		33.14	■■■□□ 2.9
TNFRSF25-208	ENST00000453341	MARF1	Q9Y4F3	1742 aa	Known RBP	33.14	■■■□□ 2.89
TNFRSF25-208	ENST00000453341	PPARGC1B	Q86YN6	1023 aa	Known RBP	33.12	■■■□□ 2.89
TNFRSF25-208	ENST00000453341	NPHP3	Q7Z494	1330 aa		33.1	■■■□□ 2.89
TNFRSF25-208	ENST00000453341	CDC42BPG	Q6DT37	1551 aa		33.1	■■■□□ 2.89
TNFRSF25-208	ENST00000453341	PPL	O60437	1756 aa		33.09	■■■□□ 2.89
TNFRSF25-208	ENST00000453341	ESCO1	Q5FWF5	840 aa		33.09	■■■□□ 2.89
TNFRSF25-208	ENST00000453341	XPC	Q01831	940 aa	Predicted RBP	33.07	■■■□□ 2.88
TNFRSF25-208	ENST00000453341	FOXD1	Q16676	465 aa		33.07	■■■□□ 2.88
TNFRSF25-208	ENST00000453341	RPGRIP1L	Q68CZ1	1315 aa		33.06	■■■□□ 2.88
TNFRSF25-208	ENST00000453341	NAIP	Q13075	1403 aa		33.06	■■■□□ 2.88
TNFRSF25-208	ENST00000453341	CCDC125	Q86Z20	511 aa		33.05	■■■□□ 2.88
TNFRSF25-208	ENST00000453341	GJD4	Q96KN9	370 aa	Predicted RBP	33.05	■■■□□ 2.88
TNFRSF25-208	ENST00000453341	FOXO3	O43524	673 aa		33.04	■■■□□ 2.88
TNFRSF25-208	ENST00000453341	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	33.02	■■■□□ 2.88
TNFRSF25-208	ENST00000453341	GLI3	P10071	1580 aa		32.99	■■■□□ 2.87
TNFRSF25-208	ENST00000453341	NUTM2F	A1L443	756 aa		32.96	■■■□□ 2.87
TNFRSF25-208	ENST00000453341	RALGAPB	Q86X10	1494 aa		32.96	■■■□□ 2.87
TNFRSF25-208	ENST00000453341	SLIT2	O94813	1529 aa		32.96	■■■□□ 2.87
TNFRSF25-208	ENST00000453341	WAPL	Q7Z5K2	1190 aa		32.94	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	UNC5CL	Q8IV45	518 aa		32.93	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	LRPPRC	P42704	1394 aa	Known RBP	32.93	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	BRWD3	Q6RI45	1802 aa		32.93	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	TECPR2	O15040	1411 aa		32.93	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	ADGRF5	Q8IZF2	1346 aa		32.92	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	BLM	P54132	1417 aa	Predicted RBP	32.92	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	RRBP1	Q9P2E9	1410 aa	Known RBP	32.92	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	STK26	Q9P289	416 aa		32.9	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	PLEKHH1	Q9ULM0	1364 aa		32.89	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	SPATA31A3	Q5VYP0	1347 aa		32.89	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.89	■■■□□ 2.86
TNFRSF25-208	ENST00000453341	USP32	Q8NFA0	1604 aa		32.88	■■■□□ 2.85
TNFRSF25-208	ENST00000453341	DEFB132	Q7Z7B7	95 aa		32.87	■■■□□ 2.85
TNFRSF25-208	ENST00000453341	FMN2	Q9NZ56	1722 aa		32.87	■■■□□ 2.85
TNFRSF25-208	ENST00000453341	KNDC1	Q76NI1	1749 aa		32.85	■■■□□ 2.85
TNFRSF25-208	ENST00000453341	KIF1A	Q12756	1690 aa		32.85	■■■□□ 2.85
TNFRSF25-208	ENST00000453341	ABCC11	Q96J66	1382 aa		32.83	■■■□□ 2.85
TNFRSF25-208	ENST00000453341	CCDC144A	A2RUR9	1427 aa		32.82	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	TMEM132E	Q6IEE7	984 aa		32.81	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	IFT172	Q9UG01	1749 aa		32.81	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	KRT28	Q7Z3Y7	464 aa		32.8	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	SEPT12	Q8IYM1	358 aa		32.8	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	SPATA31E1	Q6ZUB1	1445 aa		32.78	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	RGL3	Q3MIN7	710 aa		32.77	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	PLCH1	Q4KWH8	1693 aa		32.77	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	RGPD8	O14715	1765 aa	Predicted RBP	32.76	■■■□□ 2.84
TNFRSF25-208	ENST00000453341	TNS3	Q68CZ2	1445 aa		32.76	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	VPS72	Q15906	364 aa		32.75	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	CABLES1	Q8TDN4	633 aa		32.75	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	ANKRD30B	Q9BXX2	1392 aa		32.74	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	PIK3C2G	O75747	1445 aa		32.74	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	NWD2	Q9ULI1	1742 aa		32.74	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	LRP5	O75197	1615 aa		32.73	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.73	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	ABCA3	Q99758	1704 aa		32.72	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	ONECUT3	O60422	494 aa	Predicted RBP	32.72	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	SF3B2	Q13435	895 aa	Known RBP	32.72	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	PLEKHG5	O94827	1062 aa		32.7	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	HAP1	P54257	671 aa	Predicted RBP	32.7	■■■□□ 2.83
TNFRSF25-208	ENST00000453341	PHF8	Q9UPP1	1060 aa		32.69	■■■□□ 2.82
TNFRSF25-208	ENST00000453341	KRT27	Q7Z3Y8	459 aa		32.68	■■■□□ 2.82
TNFRSF25-208	ENST00000453341	CCDC9	Q9Y3X0	531 aa	Known RBP	32.66	■■■□□ 2.82
TNFRSF25-208	ENST00000453341	NRXN1	Q9ULB1	1477 aa		32.66	■■■□□ 2.82
TNFRSF25-208	ENST00000453341	PSME1	Q06323	249 aa		32.65	■■■□□ 2.82
TNFRSF25-208	ENST00000453341	SBNO1	A3KN83	1393 aa		32.65	■■■□□ 2.82
TNFRSF25-208	ENST00000453341	SIRT1	Q96EB6	747 aa		32.64	■■■□□ 2.82
TNFRSF25-208	ENST00000453341	FAM83G	A6ND36	823 aa		32.62	■■■□□ 2.81
TNFRSF25-208	ENST00000453341	PSD	A5PKW4	1024 aa	Predicted RBP	32.61	■■■□□ 2.81
TNFRSF25-208	ENST00000453341	LMOD2	Q6P5Q4	547 aa		32.6	■■■□□ 2.81
TNFRSF25-208	ENST00000453341	NRAP	Q86VF7	1730 aa		32.6	■■■□□ 2.81
TNFRSF25-208	ENST00000453341	ARHGEF10	O15013	1369 aa		32.59	■■■□□ 2.81
TNFRSF25-208	ENST00000453341	C14orf93	Q9H972	538 aa	Known RBP	32.57	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	HRC	P23327	699 aa		32.56	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	BAG6	P46379	1132 aa		32.55	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	MPHOSPH9	Q99550	1183 aa		32.55	■■■□□ 2.8
TNFRSF25-208	ENST00000453341		A0A0G2JS52	829 aa		32.54	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	MYT1	Q01538	1121 aa		32.54	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.54	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	FAM98C	Q17RN3	349 aa	Known RBP	32.54	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	CFAP70	Q5T0N1	1121 aa		32.53	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	PMFBP1	Q8TBY8	1022 aa		32.53	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	PRAM1	Q96QH2	718 aa		32.53	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.52	■■■□□ 2.8
TNFRSF25-208	ENST00000453341	DHX57	Q6P158	1386 aa	Known RBP	32.51	■■■□□ 2.79
TNFRSF25-208	ENST00000453341	BTG4	Q9NY30	223 aa		32.5	■■■□□ 2.79
TNFRSF25-208	ENST00000453341	ANKAR	Q7Z5J8	1434 aa		32.49	■■■□□ 2.79
TNFRSF25-208	ENST00000453341	EN1	Q05925	392 aa	Predicted RBP	32.48	■■■□□ 2.79
TNFRSF25-208	ENST00000453341	RGPD1	P0DJD0	1748 aa		32.48	■■■□□ 2.79
TNFRSF25-208	ENST00000453341	ALS2	Q96Q42	1657 aa		32.47	■■■□□ 2.79
TNFRSF25-208	ENST00000453341	FAM182B	Q5T319	152 aa		32.47	■■■□□ 2.79
TNFRSF25-208	ENST00000453341	COL14A1	Q05707	1796 aa	Known RBP	32.47	■■■□□ 2.79
TNFRSF25-208	ENST00000453341	DLC1	Q96QB1	1528 aa		32.45	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	ADGRB2	O60241	1585 aa		32.45	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	TNS1	Q9HBL0	1735 aa	Known RBP	32.42	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	THSD7A	Q9UPZ6	1657 aa		32.41	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	SPATA31A5	Q5VU36	1347 aa		32.41	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	SPATA31A7	Q8IWB4	1347 aa		32.41	■■■□□ 2.78
TNFRSF25-208	ENST00000453341	CRYBG1	Q9Y4K1	1723 aa		32.4	■■■□□ 2.78

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms