RNA–Protein interactions for RNA: ENST00000453306.4

VCX3B-204, Transcript of variable charge X-linked 3B, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3B, Length 868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3B-204ENST00000453306 NALCNQ8IZF0 1738 aa22.57■■□□□ 1.2
VCX3B-204ENST00000453306 PPLO60437 1756 aa22.56■■□□□ 1.2
VCX3B-204ENST00000453306 MYOM2P54296 1465 aa22.56■■□□□ 1.2
VCX3B-204ENST00000453306 TONSLQ96HA7 1378 aa22.56■■□□□ 1.2
VCX3B-204ENST00000453306 C1orf167Q5SNV9 1468 aa22.55■■□□□ 1.2
VCX3B-204ENST00000453306 IFT172Q9UG01 1749 aa22.55■■□□□ 1.2
VCX3B-204ENST00000453306 AFF2P51816 1311 aa22.55■■□□□ 1.2
VCX3B-204ENST00000453306 CFAP70Q5T0N1 1121 aa22.54■■□□□ 1.2
VCX3B-204ENST00000453306 PIK3C2GO75747 1445 aa22.54■■□□□ 1.2
VCX3B-204ENST00000453306 PRAG1Q86YV5 1406 aa22.54■■□□□ 1.2
VCX3B-204ENST00000453306 ROBO2Q9HCK4 1378 aa22.53■■□□□ 1.2
VCX3B-204ENST00000453306 STAC3Q96MF2 364 aa22.53■■□□□ 1.2
VCX3B-204ENST00000453306 C14orf93Q9H972 538 aaKnown RBP22.53■■□□□ 1.2
VCX3B-204ENST00000453306 PNPLA6Q8IY17 1366 aa22.52■■□□□ 1.2
VCX3B-204ENST00000453306 DDX17Q92841 729 aaKnown RBP22.52■■□□□ 1.2
VCX3B-204ENST00000453306 CDK12Q9NYV4 1490 aaPredicted RBP22.52■■□□□ 1.2
VCX3B-204ENST00000453306 C8orf37Q96NL8 207 aa22.51■■□□□ 1.19
VCX3B-204ENST00000453306 TIMELESSQ9UNS1 1208 aa22.51■■□□□ 1.19
VCX3B-204ENST00000453306 NBPF1Q3BBV0 1214 aa22.49■■□□□ 1.19
VCX3B-204ENST00000453306 TMEM132EQ6IEE7 984 aa22.49■■□□□ 1.19
VCX3B-204ENST00000453306 UPF1Q92900 1129 aaKnown RBP eCLIP22.48■■□□□ 1.19
VCX3B-204ENST00000453306 ORAI2Q96SN7 254 aa22.47■■□□□ 1.19
VCX3B-204ENST00000453306 SOS2Q07890 1332 aaPredicted RBP22.47■■□□□ 1.19
VCX3B-204ENST00000453306 LAMC1P11047 1609 aa22.46■■□□□ 1.19
VCX3B-204ENST00000453306 QTRT2Q9H974 415 aaKnown RBP22.46■■□□□ 1.19
VCX3B-204ENST00000453306 RBM6P78332 1123 aaKnown RBP22.45■■□□□ 1.18
VCX3B-204ENST00000453306 NGLY1Q96IV0 654 aa22.45■■□□□ 1.18
VCX3B-204ENST00000453306 ADAMTS2O95450 1211 aa22.43■■□□□ 1.18
VCX3B-204ENST00000453306 NPHP3Q7Z494 1330 aa22.42■■□□□ 1.18
VCX3B-204ENST00000453306 ESCO1Q5FWF5 840 aa22.41■■□□□ 1.18
VCX3B-204ENST00000453306 CDC42BPGQ6DT37 1551 aa22.4■■□□□ 1.18
VCX3B-204ENST00000453306 ADGRB1O14514 1584 aa22.39■■□□□ 1.18
VCX3B-204ENST00000453306 STK26Q9P289 416 aa22.39■■□□□ 1.17
VCX3B-204ENST00000453306 LRPPRCP42704 1394 aaKnown RBP22.38■■□□□ 1.17
VCX3B-204ENST00000453306 USP21Q9UK80 565 aa22.37■■□□□ 1.17
VCX3B-204ENST00000453306 TECPR2O15040 1411 aa22.37■■□□□ 1.17
VCX3B-204ENST00000453306 ABCC11Q96J66 1382 aa22.37■■□□□ 1.17
VCX3B-204ENST00000453306 TRPC5Q9UL62 973 aaPredicted RBP22.36■■□□□ 1.17
VCX3B-204ENST00000453306 RGS12O14924 1447 aa22.36■■□□□ 1.17
VCX3B-204ENST00000453306 WAPLQ7Z5K2 1190 aa22.34■■□□□ 1.17
VCX3B-204ENST00000453306 FNBP4Q8N3X1 1017 aaPredicted RBP22.34■■□□□ 1.17
VCX3B-204ENST00000453306 YTHDC2Q9H6S0 1430 aaKnown RBP22.33■■□□□ 1.17
VCX3B-204ENST00000453306 COL22A1Q8NFW1 1626 aaPredicted RBP22.33■■□□□ 1.17
VCX3B-204ENST00000453306 FOXO3O43524 673 aa22.32■■□□□ 1.16
VCX3B-204ENST00000453306 GPRASP1Q5JY77 1395 aa22.32■■□□□ 1.16
VCX3B-204ENST00000453306 RALGAPBQ86X10 1494 aa22.31■■□□□ 1.16
VCX3B-204ENST00000453306 TRAK1Q9UPV9 953 aa22.31■■□□□ 1.16
VCX3B-204ENST00000453306 TRPM1Q7Z4N2 1603 aa22.31■■□□□ 1.16
VCX3B-204ENST00000453306 PXDNQ92626 1479 aa22.3■■□□□ 1.16
VCX3B-204ENST00000453306 SIRT1Q96EB6 747 aa22.3■■□□□ 1.16
VCX3B-204ENST00000453306 KNDC1Q76NI1 1749 aa22.3■■□□□ 1.16
VCX3B-204ENST00000453306 ROCK2O75116 1388 aaKnown RBP22.29■■□□□ 1.16
VCX3B-204ENST00000453306 PLEKHH1Q9ULM0 1364 aa22.29■■□□□ 1.16
VCX3B-204ENST00000453306 NUTM2FA1L443 756 aa22.29■■□□□ 1.16
VCX3B-204ENST00000453306 ATAD2Q6PL18 1390 aa22.28■■□□□ 1.16
VCX3B-204ENST00000453306 XPCQ01831 940 aaPredicted RBP22.27■■□□□ 1.16
VCX3B-204ENST00000453306 KIAA1210Q9ULL0 1709 aa22.26■■□□□ 1.15
VCX3B-204ENST00000453306 ATRNO75882 1429 aa22.26■■□□□ 1.15
VCX3B-204ENST00000453306 CARD11Q9BXL7 1154 aa22.26■■□□□ 1.15
VCX3B-204ENST00000453306 PRAM1Q96QH2 718 aa22.24■■□□□ 1.15
VCX3B-204ENST00000453306 KIF1AQ12756 1690 aa22.23■■□□□ 1.15
VCX3B-204ENST00000453306 SPATA31A3Q5VYP0 1347 aa22.22■■□□□ 1.15
VCX3B-204ENST00000453306 FMN2Q9NZ56 1722 aa22.22■■□□□ 1.15
VCX3B-204ENST00000453306 PSME1Q06323 249 aa22.21■■□□□ 1.15
VCX3B-204ENST00000453306 KRT28Q7Z3Y7 464 aa22.21■■□□□ 1.15
VCX3B-204ENST00000453306 BCL9LQ86UU0 1499 aa22.21■■□□□ 1.15
VCX3B-204ENST00000453306 SAFB2Q14151 953 aaKnown RBP eCLIP22.2■■□□□ 1.14
VCX3B-204ENST00000453306 PHF8Q9UPP1 1060 aa22.19■■□□□ 1.14
VCX3B-204ENST00000453306 DLC1Q96QB1 1528 aa22.19■■□□□ 1.14
VCX3B-204ENST00000453306 MARF1Q9Y4F3 1742 aaKnown RBP22.19■■□□□ 1.14
VCX3B-204ENST00000453306 HAP1P54257 671 aaPredicted RBP22.18■■□□□ 1.14
VCX3B-204ENST00000453306 GJD4Q96KN9 370 aaPredicted RBP22.18■■□□□ 1.14
VCX3B-204ENST00000453306 POGKQ9P215 609 aa22.17■■□□□ 1.14
VCX3B-204ENST00000453306 CCDC125Q86Z20 511 aa22.16■■□□□ 1.14
VCX3B-204ENST00000453306 UNC5CLQ8IV45 518 aa22.16■■□□□ 1.14
VCX3B-204ENST00000453306 ZEB1P37275 1124 aaPredicted RBP22.15■■□□□ 1.14
VCX3B-204ENST00000453306 TNS3Q68CZ2 1445 aa22.14■■□□□ 1.14
VCX3B-204ENST00000453306 ST20-MTHFSA0A0A6YYL1 179 aa22.14■■□□□ 1.13
VCX3B-204ENST00000453306 USP47Q96K76 1375 aa22.13■■□□□ 1.13
VCX3B-204ENST00000453306 TESK2Q96S53 571 aa22.13■■□□□ 1.13
VCX3B-204ENST00000453306 SBNO1A3KN83 1393 aa22.12■■□□□ 1.13
VCX3B-204ENST00000453306 MINK1Q8N4C8 1332 aaPredicted RBP22.12■■□□□ 1.13
VCX3B-204ENST00000453306 CENPJQ9HC77 1338 aaPredicted RBP22.12■■□□□ 1.13
VCX3B-204ENST00000453306 SLIT2O94813 1529 aa22.12■■□□□ 1.13
VCX3B-204ENST00000453306 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.12■■□□□ 1.13
VCX3B-204ENST00000453306 HIRIP3Q9BW71 556 aaPredicted RBP22.12■■□□□ 1.13
VCX3B-204ENST00000453306 ANKARQ7Z5J8 1434 aa22.12■■□□□ 1.13
VCX3B-204ENST00000453306 ARHGEF10O15013 1369 aa22.12■■□□□ 1.13
VCX3B-204ENST00000453306 HSPA5P11021 654 aaKnown RBP22.11■■□□□ 1.13
VCX3B-204ENST00000453306 USP32Q8NFA0 1604 aa22.1■■□□□ 1.13
VCX3B-204ENST00000453306 LMOD2Q6P5Q4 547 aa22.1■■□□□ 1.13
VCX3B-204ENST00000453306 ARHGEF28Q8N1W1 1705 aaKnown RBP22.1■■□□□ 1.13
VCX3B-204ENST00000453306 EIF3AQ14152 1382 aaKnown RBP22.1■■□□□ 1.13
VCX3B-204ENST00000453306 ZRANB1Q9UGI0 708 aa22.08■■□□□ 1.13
VCX3B-204ENST00000453306 PMFBP1Q8TBY8 1022 aa22.06■■□□□ 1.12
VCX3B-204ENST00000453306 RGPD8O14715 1765 aaPredicted RBP22.06■■□□□ 1.12
VCX3B-204ENST00000453306 ADGRB2O60241 1585 aa22.05■■□□□ 1.12
VCX3B-204ENST00000453306 EIF4G2P78344 907 aaKnown RBP eCLIP22.05■■□□□ 1.12
VCX3B-204ENST00000453306 VPS72Q15906 364 aa22.05■■□□□ 1.12
VCX3B-204ENST00000453306 CABLES1Q8TDN4 633 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms