RNA–Protein interactions for RNA: ENST00000453007.1

SCN3A-205, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 1,216 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-205ENST00000453007 NEUROD2Q15784 382 aa11.4□□□□□ -0.58
SCN3A-205ENST00000453007 FCF1Q9Y324 198 aaKnown RBP11.4□□□□□ -0.58
SCN3A-205ENST00000453007 MSS51Q4VC12 460 aa11.39□□□□□ -0.59
SCN3A-205ENST00000453007 USB1Q9BQ65 265 aaKnown RBP11.39□□□□□ -0.59
SCN3A-205ENST00000453007 BEGAINQ9BUH8 593 aa11.39□□□□□ -0.59
SCN3A-205ENST00000453007 LAPTM4AQ15012 233 aa11.38□□□□□ -0.59
SCN3A-205ENST00000453007 PLA2G2CQ5R387 149 aa11.38□□□□□ -0.59
SCN3A-205ENST00000453007 Q6ZNB5 142 aa11.38□□□□□ -0.59
SCN3A-205ENST00000453007 LIAT1Q6ZQX7 453 aa11.38□□□□□ -0.59
SCN3A-205ENST00000453007 SPIRE2Q8WWL2 714 aa11.38□□□□□ -0.59
SCN3A-205ENST00000453007 EMID1Q96A84 441 aaPredicted RBP11.38□□□□□ -0.59
SCN3A-205ENST00000453007 PDE4DQ08499 809 aa11.37□□□□□ -0.59
SCN3A-205ENST00000453007 SPRYD7Q5W111 196 aa11.37□□□□□ -0.59
SCN3A-205ENST00000453007 FDX1P10109 184 aa11.36□□□□□ -0.59
SCN3A-205ENST00000453007 PDZRN3Q9UPQ7 1066 aa11.36□□□□□ -0.59
SCN3A-205ENST00000453007 ZNF697Q5TEC3 545 aa11.35□□□□□ -0.59
SCN3A-205ENST00000453007 ZNF598Q86UK7 904 aaKnown RBP11.35□□□□□ -0.59
SCN3A-205ENST00000453007 ABCC9O60706 1549 aa11.35□□□□□ -0.59
SCN3A-205ENST00000453007 MS4A1P11836 297 aa11.34□□□□□ -0.59
SCN3A-205ENST00000453007 SYMPKQ92797 1274 aaKnown RBP11.34□□□□□ -0.59
SCN3A-205ENST00000453007 MOXD2PA6NHM9 499 aa11.33□□□□□ -0.6
SCN3A-205ENST00000453007 C6orf229H3BNL8 230 aa11.33□□□□□ -0.6
SCN3A-205ENST00000453007 NRG2O14511 850 aaPredicted RBP11.33□□□□□ -0.6
SCN3A-205ENST00000453007 NDUFV2P19404 249 aa11.33□□□□□ -0.6
SCN3A-205ENST00000453007 ZBTB24O43167 697 aaPredicted RBP11.32□□□□□ -0.6
SCN3A-205ENST00000453007 DIXDC1Q155Q3 683 aa11.32□□□□□ -0.6
SCN3A-205ENST00000453007 ARXQ96QS3 562 aa11.32□□□□□ -0.6
SCN3A-205ENST00000453007 MMP16P51512 607 aa11.31□□□□□ -0.6
SCN3A-205ENST00000453007 TBC1D2Q9BYX2 928 aa11.31□□□□□ -0.6
SCN3A-205ENST00000453007 PCDHGC3Q9UN70 934 aa11.31□□□□□ -0.6
SCN3A-205ENST00000453007 RPIAP49247 311 aa11.3□□□□□ -0.6
SCN3A-205ENST00000453007 RETREG3Q86VR2 466 aa11.3□□□□□ -0.6
SCN3A-205ENST00000453007 DXOO77932 396 aaKnown RBP11.29□□□□□ -0.6
SCN3A-205ENST00000453007 CD2BP2O95400 341 aaKnown RBP11.29□□□□□ -0.6
SCN3A-205ENST00000453007 CCDC24Q8N4L8 307 aa11.29□□□□□ -0.6
SCN3A-205ENST00000453007 TNFRSF10AO00220 468 aa11.27□□□□□ -0.61
SCN3A-205ENST00000453007 JUNDP17535 347 aa11.27□□□□□ -0.61
SCN3A-205ENST00000453007 TRIM67Q6ZTA4 783 aa11.27□□□□□ -0.61
SCN3A-205ENST00000453007 FOXC1Q12948 553 aa11.26□□□□□ -0.61
SCN3A-205ENST00000453007 MTMR2Q13614 643 aa11.25□□□□□ -0.61
SCN3A-205ENST00000453007 RSBN1LQ6PCB5 846 aaPredicted RBP11.24□□□□□ -0.61
SCN3A-205ENST00000453007 PRR20EP86478 221 aa11.23□□□□□ -0.61
SCN3A-205ENST00000453007 PRR20CP86479 221 aa11.23□□□□□ -0.61
SCN3A-205ENST00000453007 PRR20DP86480 221 aa11.23□□□□□ -0.61
SCN3A-205ENST00000453007 PRR20BP86481 221 aa11.23□□□□□ -0.61
SCN3A-205ENST00000453007 PRR20AP86496 221 aa11.23□□□□□ -0.61
SCN3A-205ENST00000453007 RIC3Q7Z5B4 369 aa11.23□□□□□ -0.61
SCN3A-205ENST00000453007 GDF9O60383 454 aa11.22□□□□□ -0.61
SCN3A-205ENST00000453007 CSPP1Q1MSJ5 1256 aa11.22□□□□□ -0.61
SCN3A-205ENST00000453007 PRR7Q8TB68 274 aa11.22□□□□□ -0.61
SCN3A-205ENST00000453007 SPDYE5A6NIY4 337 aa11.21□□□□□ -0.61
SCN3A-205ENST00000453007 GJA5P36382 358 aa11.21□□□□□ -0.61
SCN3A-205ENST00000453007 TRIM32Q13049 653 aa11.21□□□□□ -0.61
SCN3A-205ENST00000453007 TRAF7Q6Q0C0 670 aa11.21□□□□□ -0.61
SCN3A-205ENST00000453007 NUDT12Q9BQG2 462 aa11.21□□□□□ -0.61
SCN3A-205ENST00000453007 SPTLC1O15269 473 aa11.2□□□□□ -0.62
SCN3A-205ENST00000453007 PKDCCQ504Y2 493 aa11.2□□□□□ -0.62
SCN3A-205ENST00000453007 PCDHB15Q9Y5E8 787 aa11.2□□□□□ -0.62
SCN3A-205ENST00000453007 ZBTB3Q9H5J0 574 aa11.19□□□□□ -0.62
SCN3A-205ENST00000453007 GPBP1L1Q9HC44 474 aaPredicted RBP11.19□□□□□ -0.62
SCN3A-205ENST00000453007 PKD2L1Q9P0L9 805 aa11.19□□□□□ -0.62
SCN3A-205ENST00000453007 FAM187AA6NFU0 413 aa11.18□□□□□ -0.62
SCN3A-205ENST00000453007 MYSM1Q5VVJ2 828 aa11.18□□□□□ -0.62
SCN3A-205ENST00000453007 KDM4CQ9H3R0 1056 aa11.18□□□□□ -0.62
SCN3A-205ENST00000453007 CCDC180Q9P1Z9 1646 aa11.17□□□□□ -0.62
SCN3A-205ENST00000453007 CCNYL3P0C7X3 344 aa11.16□□□□□ -0.62
SCN3A-205ENST00000453007 HRCP23327 699 aa11.16□□□□□ -0.62
SCN3A-205ENST00000453007 RSPH6AQ9H0K4 717 aa11.16□□□□□ -0.62
SCN3A-205ENST00000453007 NUTM2BA6NNL0 878 aaPredicted RBP11.15□□□□□ -0.62
SCN3A-205ENST00000453007 NUTM2EB1AL46 878 aaPredicted RBP11.15□□□□□ -0.62
SCN3A-205ENST00000453007 PTPRNQ16849 979 aa11.15□□□□□ -0.62
SCN3A-205ENST00000453007 NUTM2DQ5VT03 806 aaPredicted RBP11.15□□□□□ -0.62
SCN3A-205ENST00000453007 NUTM2AQ8IVF1 878 aaPredicted RBP11.15□□□□□ -0.62
SCN3A-205ENST00000453007 CYP4X1Q8N118 509 aa11.15□□□□□ -0.62
SCN3A-205ENST00000453007 CABLES1Q8TDN4 633 aa11.15□□□□□ -0.62
SCN3A-205ENST00000453007 LIMD1Q9UGP4 676 aa11.15□□□□□ -0.62
SCN3A-205ENST00000453007 DGAT1O75907 488 aa11.14□□□□□ -0.63
SCN3A-205ENST00000453007 PRPF38BQ5VTL8 546 aaKnown RBP11.14□□□□□ -0.63
SCN3A-205ENST00000453007 HOMEZQ8IX15 550 aa11.14□□□□□ -0.63
SCN3A-205ENST00000453007 TSC1Q92574 1164 aa11.14□□□□□ -0.63
SCN3A-205ENST00000453007 SUPT5HO00267 1087 aaKnown RBP11.13□□□□□ -0.63
SCN3A-205ENST00000453007 LCE2BO14633 110 aa11.13□□□□□ -0.63
SCN3A-205ENST00000453007 CLK2P49760 499 aaKnown RBP11.13□□□□□ -0.63
SCN3A-205ENST00000453007 DESI1Q6ICB0 168 aa11.13□□□□□ -0.63
SCN3A-205ENST00000453007 PTCRAQ6ISU1 281 aaPredicted RBP11.13□□□□□ -0.63
SCN3A-205ENST00000453007 POLR3EQ9NVU0 708 aa11.13□□□□□ -0.63
SCN3A-205ENST00000453007 ATP1B4Q9UN42 357 aaPredicted RBP11.13□□□□□ -0.63
SCN3A-205ENST00000453007 TTC24A2A3L6 582 aaPredicted RBP11.12□□□□□ -0.63
SCN3A-205ENST00000453007 CFAP99D6REC4 459 aa11.12□□□□□ -0.63
SCN3A-205ENST00000453007 WNT7AO00755 349 aa11.12□□□□□ -0.63
SCN3A-205ENST00000453007 CTHP32929 405 aa11.1□□□□□ -0.63
SCN3A-205ENST00000453007 WNT7BP56706 349 aa11.1□□□□□ -0.63
SCN3A-205ENST00000453007 QPCTQ16769 361 aa11.1□□□□□ -0.63
SCN3A-205ENST00000453007 DDRGK1Q96HY6 314 aa11.1□□□□□ -0.63
SCN3A-205ENST00000453007 EVA1BQ9NVM1 165 aa11.1□□□□□ -0.63
SCN3A-205ENST00000453007 KCNH2Q12809 1159 aa11.09□□□□□ -0.63
SCN3A-205ENST00000453007 IL27Q8NEV9 243 aa11.09□□□□□ -0.63
SCN3A-205ENST00000453007 MRGPRX2Q96LB1 330 aa11.09□□□□□ -0.63
SCN3A-205ENST00000453007 FAM117AQ9C073 453 aa11.09□□□□□ -0.63
SCN3A-205ENST00000453007 TOR4AQ9NXH8 423 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms