RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TRPC5Q9UL62 973 aaPredicted RBP19.75■□□□□ 0.75
HMGB3-204ENST00000448905 NALCNQ8IZF0 1738 aa19.75■□□□□ 0.75
HMGB3-204ENST00000448905 ADGRF5Q8IZF2 1346 aa19.75■□□□□ 0.75
HMGB3-204ENST00000448905 LRPPRCP42704 1394 aaKnown RBP19.74■□□□□ 0.75
HMGB3-204ENST00000448905 ANKRD30BQ9BXX2 1392 aa19.74■□□□□ 0.75
HMGB3-204ENST00000448905 FOXO3O43524 673 aa19.73■□□□□ 0.75
HMGB3-204ENST00000448905 FNBP4Q8N3X1 1017 aaPredicted RBP19.73■□□□□ 0.75
HMGB3-204ENST00000448905 WAPLQ7Z5K2 1190 aa19.72■□□□□ 0.75
HMGB3-204ENST00000448905 PRAG1Q86YV5 1406 aa19.71■□□□□ 0.75
HMGB3-204ENST00000448905 KIF1BO60333 1816 aa19.71■□□□□ 0.75
HMGB3-204ENST00000448905 TMEM132EQ6IEE7 984 aa19.7■□□□□ 0.74
HMGB3-204ENST00000448905 RGS12O14924 1447 aa19.69■□□□□ 0.74
HMGB3-204ENST00000448905 NUTM2FA1L443 756 aa19.69■□□□□ 0.74
HMGB3-204ENST00000448905 SIRT1Q96EB6 747 aa19.69■□□□□ 0.74
HMGB3-204ENST00000448905 ABCC11Q96J66 1382 aa19.69■□□□□ 0.74
HMGB3-204ENST00000448905 XPCQ01831 940 aaPredicted RBP19.66■□□□□ 0.74
HMGB3-204ENST00000448905 C14orf93Q9H972 538 aaKnown RBP19.65■□□□□ 0.74
HMGB3-204ENST00000448905 PSME1Q06323 249 aa19.64■□□□□ 0.73
HMGB3-204ENST00000448905 ATAD2Q6PL18 1390 aa19.63■□□□□ 0.73
HMGB3-204ENST00000448905 KRT28Q7Z3Y7 464 aa19.63■□□□□ 0.73
HMGB3-204ENST00000448905 SPATA31E1Q6ZUB1 1445 aa19.62■□□□□ 0.73
HMGB3-204ENST00000448905 DHX57Q6P158 1386 aaKnown RBP19.62■□□□□ 0.73
HMGB3-204ENST00000448905 HAP1P54257 671 aaPredicted RBP19.62■□□□□ 0.73
HMGB3-204ENST00000448905 CCDC125Q86Z20 511 aa19.61■□□□□ 0.73
HMGB3-204ENST00000448905 GJD4Q96KN9 370 aaPredicted RBP19.61■□□□□ 0.73
HMGB3-204ENST00000448905 TECPR2O15040 1411 aa19.6■□□□□ 0.73
HMGB3-204ENST00000448905 CFAP70Q5T0N1 1121 aa19.59■□□□□ 0.73
HMGB3-204ENST00000448905 POGKQ9P215 609 aa19.59■□□□□ 0.73
HMGB3-204ENST00000448905 SPATA31A3Q5VYP0 1347 aa19.58■□□□□ 0.73
HMGB3-204ENST00000448905 PHF8Q9UPP1 1060 aa19.58■□□□□ 0.72
HMGB3-204ENST00000448905 YTHDC2Q9H6S0 1430 aaKnown RBP19.58■□□□□ 0.72
HMGB3-204ENST00000448905 LAMC1P11047 1609 aa19.58■□□□□ 0.72
HMGB3-204ENST00000448905 UNC5CLQ8IV45 518 aa19.57■□□□□ 0.72
HMGB3-204ENST00000448905 PPLO60437 1756 aa19.57■□□□□ 0.72
HMGB3-204ENST00000448905 PLEKHH1Q9ULM0 1364 aa19.57■□□□□ 0.72
HMGB3-204ENST00000448905 PRAM1Q96QH2 718 aa19.56■□□□□ 0.72
HMGB3-204ENST00000448905 PIK3C2GO75747 1445 aa19.56■□□□□ 0.72
HMGB3-204ENST00000448905 ATRNO75882 1429 aa19.55■□□□□ 0.72
HMGB3-204ENST00000448905 SAFB2Q14151 953 aaKnown RBP eCLIP19.55■□□□□ 0.72
HMGB3-204ENST00000448905 LMOD2Q6P5Q4 547 aa19.55■□□□□ 0.72
HMGB3-204ENST00000448905 ZRANB1Q9UGI0 708 aa19.55■□□□□ 0.72
HMGB3-204ENST00000448905 CDC42BPGQ6DT37 1551 aa19.54■□□□□ 0.72
HMGB3-204ENST00000448905 MYOM2P54296 1465 aa19.54■□□□□ 0.72
HMGB3-204ENST00000448905 STAC3Q96MF2 364 aa19.53■□□□□ 0.72
HMGB3-204ENST00000448905 BCL9LQ86UU0 1499 aa19.53■□□□□ 0.72
HMGB3-204ENST00000448905 PXDNQ92626 1479 aa19.53■□□□□ 0.72
HMGB3-204ENST00000448905 PLEKHG5O94827 1062 aa19.5■□□□□ 0.71
HMGB3-204ENST00000448905 CCDC9Q9Y3X0 531 aaKnown RBP19.5■□□□□ 0.71
HMGB3-204ENST00000448905 COL22A1Q8NFW1 1626 aaPredicted RBP19.5■□□□□ 0.71
HMGB3-204ENST00000448905 KDM2AQ9Y2K7 1162 aa19.49■□□□□ 0.71
HMGB3-204ENST00000448905 PMFBP1Q8TBY8 1022 aa19.48■□□□□ 0.71
HMGB3-204ENST00000448905 CABLES1Q8TDN4 633 aa19.48■□□□□ 0.71
HMGB3-204ENST00000448905 DCAF11Q8TEB1 546 aa19.48■□□□□ 0.71
HMGB3-204ENST00000448905 TRAK1Q9UPV9 953 aa19.48■□□□□ 0.71
HMGB3-204ENST00000448905 SF3B2Q13435 895 aaKnown RBP19.47■□□□□ 0.71
HMGB3-204ENST00000448905 VPS72Q15906 364 aa19.47■□□□□ 0.71
HMGB3-204ENST00000448905 SBNO1A3KN83 1393 aa19.46■□□□□ 0.71
HMGB3-204ENST00000448905 ARHGEF10O15013 1369 aa19.46■□□□□ 0.71
HMGB3-204ENST00000448905 MARF1Q9Y4F3 1742 aaKnown RBP19.46■□□□□ 0.71
HMGB3-204ENST00000448905 SEPT12Q8IYM1 358 aa19.45■□□□□ 0.7
HMGB3-204ENST00000448905 GPRASP1Q5JY77 1395 aa19.44■□□□□ 0.7
HMGB3-204ENST00000448905 RAB3GAP2Q9H2M9 1393 aa19.44■□□□□ 0.7
HMGB3-204ENST00000448905 HRCP23327 699 aa19.44■□□□□ 0.7
HMGB3-204ENST00000448905 HIRIP3Q9BW71 556 aaPredicted RBP19.43■□□□□ 0.7
HMGB3-204ENST00000448905 TNS3Q68CZ2 1445 aa19.42■□□□□ 0.7
HMGB3-204ENST00000448905 NRXN1Q9ULB1 1477 aa19.42■□□□□ 0.7
HMGB3-204ENST00000448905 FAM83GA6ND36 823 aa19.42■□□□□ 0.7
HMGB3-204ENST00000448905 ONECUT3O60422 494 aaPredicted RBP19.42■□□□□ 0.7
HMGB3-204ENST00000448905 NGDNQ8NEJ9 315 aaKnown RBP19.42■□□□□ 0.7
HMGB3-204ENST00000448905 EIF3AQ14152 1382 aaKnown RBP19.42■□□□□ 0.7
HMGB3-204ENST00000448905 WASLO00401 505 aaPredicted RBP19.41■□□□□ 0.7
HMGB3-204ENST00000448905 MINK1Q8N4C8 1332 aaPredicted RBP19.41■□□□□ 0.7
HMGB3-204ENST00000448905 SLIT2O94813 1529 aa19.41■□□□□ 0.7
HMGB3-204ENST00000448905 IFT172Q9UG01 1749 aa19.4■□□□□ 0.7
HMGB3-204ENST00000448905 RGPD8O14715 1765 aaPredicted RBP19.4■□□□□ 0.7
HMGB3-204ENST00000448905 A0A0G2JS52 829 aa19.4■□□□□ 0.7
HMGB3-204ENST00000448905 MYT1Q01538 1121 aa19.4■□□□□ 0.7
HMGB3-204ENST00000448905 ANKARQ7Z5J8 1434 aa19.4■□□□□ 0.7
HMGB3-204ENST00000448905 PAK3O75914 559 aaPredicted RBP19.39■□□□□ 0.69
HMGB3-204ENST00000448905 KRT27Q7Z3Y8 459 aa19.39■□□□□ 0.69
HMGB3-204ENST00000448905 RALGAPBQ86X10 1494 aa19.39■□□□□ 0.69
HMGB3-204ENST00000448905 EP400Q96L91 3159 aa19.38■□□□□ 0.69
HMGB3-204ENST00000448905 FMN2Q9NZ56 1722 aa19.38■□□□□ 0.69
HMGB3-204ENST00000448905 SRCAPQ6ZRS2 3230 aa19.37■□□□□ 0.69
HMGB3-204ENST00000448905 GLI3P10071 1580 aa19.37■□□□□ 0.69
HMGB3-204ENST00000448905 BTG4Q9NY30 223 aa19.37■□□□□ 0.69
HMGB3-204ENST00000448905 BLMP54132 1417 aaPredicted RBP19.36■□□□□ 0.69
HMGB3-204ENST00000448905 BRWD3Q6RI45 1802 aa19.36■□□□□ 0.69
HMGB3-204ENST00000448905 KNDC1Q76NI1 1749 aa19.36■□□□□ 0.69
HMGB3-204ENST00000448905 DEFB132Q7Z7B7 95 aa19.35■□□□□ 0.69
HMGB3-204ENST00000448905 DLC1Q96QB1 1528 aa19.34■□□□□ 0.69
HMGB3-204ENST00000448905 KIF1AQ12756 1690 aa19.33■□□□□ 0.69
HMGB3-204ENST00000448905 NUDT16Q96DE0 195 aaKnown RBP19.33■□□□□ 0.68
HMGB3-204ENST00000448905 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.33■□□□□ 0.68
HMGB3-204ENST00000448905 FAM98CQ17RN3 349 aaKnown RBP19.32■□□□□ 0.68
HMGB3-204ENST00000448905 PRDM11Q9NQV5 511 aa19.31■□□□□ 0.68
HMGB3-204ENST00000448905 USP32Q8NFA0 1604 aa19.31■□□□□ 0.68
HMGB3-204ENST00000448905 PRR36Q9H6K5 1346 aa19.3■□□□□ 0.68
HMGB3-204ENST00000448905 BAG6P46379 1132 aa19.3■□□□□ 0.68
HMGB3-204ENST00000448905 CDK19Q9BWU1 502 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms