RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 C19orf44Q9H6X5 657 aa22.95■■□□□ 1.26
USP39-205ENST00000442708 RALGAPBQ86X10 1494 aa22.94■■□□□ 1.26
USP39-205ENST00000442708 ROCK2O75116 1388 aaKnown RBP22.93■■□□□ 1.26
USP39-205ENST00000442708 GPRASP1Q5JY77 1395 aa22.92■■□□□ 1.26
USP39-205ENST00000442708 SAFB2Q14151 953 aaKnown RBP eCLIP22.92■■□□□ 1.26
USP39-205ENST00000442708 TOM1O60784 492 aa22.91■■□□□ 1.26
USP39-205ENST00000442708 DCCP43146 1447 aa22.91■■□□□ 1.26
USP39-205ENST00000442708 PIP4K2BP78356 416 aa22.88■■□□□ 1.25
USP39-205ENST00000442708 POGKQ9P215 609 aa22.88■■□□□ 1.25
USP39-205ENST00000442708 CDC42BPGQ6DT37 1551 aa22.88■■□□□ 1.25
USP39-205ENST00000442708 ATF3P18847 181 aa22.87■■□□□ 1.25
USP39-205ENST00000442708 MST1RQ04912 1400 aa22.86■■□□□ 1.25
USP39-205ENST00000442708 CADPS2Q86UW7 1296 aa22.86■■□□□ 1.25
USP39-205ENST00000442708 SLAIN2Q9P270 581 aa22.86■■□□□ 1.25
USP39-205ENST00000442708 ADGRB2O60241 1585 aa22.84■■□□□ 1.25
USP39-205ENST00000442708 ROBO1Q9Y6N7 1651 aa22.84■■□□□ 1.25
USP39-205ENST00000442708 CARD11Q9BXL7 1154 aa22.84■■□□□ 1.25
USP39-205ENST00000442708 FMN2Q9NZ56 1722 aa22.84■■□□□ 1.25
USP39-205ENST00000442708 QRICH2Q9H0J4 1663 aa22.84■■□□□ 1.25
USP39-205ENST00000442708 MINK1Q8N4C8 1332 aaPredicted RBP22.83■■□□□ 1.25
USP39-205ENST00000442708 SCAF1Q9H7N4 1312 aaKnown RBP22.83■■□□□ 1.25
USP39-205ENST00000442708 HIRIP3Q9BW71 556 aaPredicted RBP22.83■■□□□ 1.25
USP39-205ENST00000442708 C1orf167Q5SNV9 1468 aa22.8■■□□□ 1.24
USP39-205ENST00000442708 RGPD8O14715 1765 aaPredicted RBP22.8■■□□□ 1.24
USP39-205ENST00000442708 CENPJQ9HC77 1338 aaPredicted RBP22.8■■□□□ 1.24
USP39-205ENST00000442708 USP32Q8NFA0 1604 aa22.78■■□□□ 1.24
USP39-205ENST00000442708 NUTM2FA1L443 756 aa22.77■■□□□ 1.24
USP39-205ENST00000442708 BRINP3Q76B58 766 aa22.75■■□□□ 1.23
USP39-205ENST00000442708 WASLO00401 505 aaPredicted RBP22.74■■□□□ 1.23
USP39-205ENST00000442708 ORAI2Q96SN7 254 aa22.74■■□□□ 1.23
USP39-205ENST00000442708 EIF3AQ14152 1382 aaKnown RBP22.74■■□□□ 1.23
USP39-205ENST00000442708 TULP4Q9NRJ4 1543 aa22.72■■□□□ 1.23
USP39-205ENST00000442708 HSPA1LP34931 641 aa22.72■■□□□ 1.23
USP39-205ENST00000442708 PRR36Q9H6K5 1346 aa22.71■■□□□ 1.23
USP39-205ENST00000442708 CDK19Q9BWU1 502 aa22.7■■□□□ 1.22
USP39-205ENST00000442708 USP47Q96K76 1375 aa22.7■■□□□ 1.22
USP39-205ENST00000442708 PHLPP1O60346 1717 aa22.69■■□□□ 1.22
USP39-205ENST00000442708 NHSL1Q5SYE7 1610 aa22.69■■□□□ 1.22
USP39-205ENST00000442708 ST20-MTHFSA0A0A6YYL1 179 aa22.69■■□□□ 1.22
USP39-205ENST00000442708 DDX17Q92841 729 aaKnown RBP22.69■■□□□ 1.22
USP39-205ENST00000442708 AHDC1Q5TGY3 1603 aaPredicted RBP22.68■■□□□ 1.22
USP39-205ENST00000442708 ANKARQ7Z5J8 1434 aa22.68■■□□□ 1.22
USP39-205ENST00000442708 ESCO1Q5FWF5 840 aa22.68■■□□□ 1.22
USP39-205ENST00000442708 ATP7BP35670 1465 aa22.67■■□□□ 1.22
USP39-205ENST00000442708 SBNO2Q9Y2G9 1366 aa22.66■■□□□ 1.22
USP39-205ENST00000442708 TESK2Q96S53 571 aa22.66■■□□□ 1.22
USP39-205ENST00000442708 TOPAZ1Q8N9V7 1692 aa22.65■■□□□ 1.22
USP39-205ENST00000442708 COL16A1Q07092 1604 aaPredicted RBP22.65■■□□□ 1.22
USP39-205ENST00000442708 CABP2Q9NPB3 220 aa22.64■■□□□ 1.21
USP39-205ENST00000442708 KIF1AQ12756 1690 aa22.64■■□□□ 1.21
USP39-205ENST00000442708 NUDT16Q96DE0 195 aaKnown RBP22.63■■□□□ 1.21
USP39-205ENST00000442708 ITSN1Q15811 1721 aa22.62■■□□□ 1.21
USP39-205ENST00000442708 EVC2Q86UK5 1308 aa22.61■■□□□ 1.21
USP39-205ENST00000442708 SRPK2P78362 688 aaKnown RBP22.61■■□□□ 1.21
USP39-205ENST00000442708 PHF8Q9UPP1 1060 aa22.61■■□□□ 1.21
USP39-205ENST00000442708 PMFBP1Q8TBY8 1022 aa22.6■■□□□ 1.21
USP39-205ENST00000442708 FOXO3O43524 673 aa22.59■■□□□ 1.21
USP39-205ENST00000442708 PXDNQ92626 1479 aa22.59■■□□□ 1.21
USP39-205ENST00000442708 HSPA5P11021 654 aaKnown RBP22.58■■□□□ 1.21
USP39-205ENST00000442708 MED1Q15648 1581 aaPredicted RBP22.58■■□□□ 1.2
USP39-205ENST00000442708 XPCQ01831 940 aaPredicted RBP22.57■■□□□ 1.2
USP39-205ENST00000442708 SOS2Q07890 1332 aaPredicted RBP22.56■■□□□ 1.2
USP39-205ENST00000442708 CCDC61Q9Y6R9 512 aa22.55■■□□□ 1.2
USP39-205ENST00000442708 NPHP3Q7Z494 1330 aa22.55■■□□□ 1.2
USP39-205ENST00000442708 EIF4G2P78344 907 aaKnown RBP eCLIP22.54■■□□□ 1.2
USP39-205ENST00000442708 PPIP5K1Q6PFW1 1433 aa22.54■■□□□ 1.2
USP39-205ENST00000442708 PLEKHG3A1L390 1219 aa22.52■■□□□ 1.2
USP39-205ENST00000442708 TRPM3Q9HCF6 1732 aaPredicted RBP22.51■■□□□ 1.19
USP39-205ENST00000442708 KRT28Q7Z3Y7 464 aa22.51■■□□□ 1.19
USP39-205ENST00000442708 CABP1Q9NZU7 370 aa22.51■■□□□ 1.19
USP39-205ENST00000442708 POLR3AO14802 1390 aaPredicted RBP22.5■■□□□ 1.19
USP39-205ENST00000442708 SHPRHQ149N8 1683 aa22.5■■□□□ 1.19
USP39-205ENST00000442708 ACEP12821 1306 aa22.5■■□□□ 1.19
USP39-205ENST00000442708 ATAD2Q6PL18 1390 aa22.5■■□□□ 1.19
USP39-205ENST00000442708 TMF1P82094 1093 aa22.48■■□□□ 1.19
USP39-205ENST00000442708 PSME1Q06323 249 aa22.48■■□□□ 1.19
USP39-205ENST00000442708 NGDNQ8NEJ9 315 aaKnown RBP22.48■■□□□ 1.19
USP39-205ENST00000442708 LRRC59Q96AG4 307 aaKnown RBP22.47■■□□□ 1.19
USP39-205ENST00000442708 PUS7Q96PZ0 661 aaKnown RBP22.47■■□□□ 1.19
USP39-205ENST00000442708 AKAP12Q02952 1782 aa22.47■■□□□ 1.19
USP39-205ENST00000442708 JCADQ9P266 1359 aa22.47■■□□□ 1.19
USP39-205ENST00000442708 PNPLA6Q8IY17 1366 aa22.46■■□□□ 1.19
USP39-205ENST00000442708 SLC24A1O60721 1099 aa22.45■■□□□ 1.18
USP39-205ENST00000442708 CD163L1Q9NR16 1453 aa22.45■■□□□ 1.18
USP39-205ENST00000442708 ALS2Q96Q42 1657 aa22.45■■□□□ 1.18
USP39-205ENST00000442708 SPATA31A3Q5VYP0 1347 aa22.44■■□□□ 1.18
USP39-205ENST00000442708 SLC12A5Q9H2X9 1139 aa22.44■■□□□ 1.18
USP39-205ENST00000442708 MYOM1P52179 1685 aa22.43■■□□□ 1.18
USP39-205ENST00000442708 COL22A1Q8NFW1 1626 aaPredicted RBP22.43■■□□□ 1.18
USP39-205ENST00000442708 SBNO1A3KN83 1393 aa22.43■■□□□ 1.18
USP39-205ENST00000442708 C11orf95C9JLR9 678 aaPredicted RBP22.43■■□□□ 1.18
USP39-205ENST00000442708 TNS3Q68CZ2 1445 aa22.42■■□□□ 1.18
USP39-205ENST00000442708 CPSF1Q10570 1443 aaKnown RBP22.41■■□□□ 1.18
USP39-205ENST00000442708 TMC1Q8TDI8 760 aa22.41■■□□□ 1.18
USP39-205ENST00000442708 USP6P35125 1406 aa22.4■■□□□ 1.18
USP39-205ENST00000442708 MON2Q7Z3U7 1717 aa22.4■■□□□ 1.18
USP39-205ENST00000442708 LRP6O75581 1613 aa22.39■■□□□ 1.18
USP39-205ENST00000442708 NRKQ7Z2Y5 1582 aa22.39■■□□□ 1.18
USP39-205ENST00000442708 SSH2Q76I76 1423 aa22.39■■□□□ 1.17
USP39-205ENST00000442708 PAK3O75914 559 aaPredicted RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms