RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 TRAK2O60296 914 aa25.79■■□□□ 1.72
SHOX2-203ENST00000441443 RAPGEF3O95398 923 aa25.78■■□□□ 1.72
SHOX2-203ENST00000441443 PMFBP1Q8TBY8 1022 aa25.78■■□□□ 1.72
SHOX2-203ENST00000441443 WWC1Q8IX03 1113 aa25.78■■□□□ 1.72
SHOX2-203ENST00000441443 HSP90AA2PQ14568 343 aaPredicted RBP25.77■■□□□ 1.72
SHOX2-203ENST00000441443 HSP90AA1P07900 732 aaKnown RBP25.77■■□□□ 1.72
SHOX2-203ENST00000441443 CLTCL1P53675 1640 aa25.77■■□□□ 1.72
SHOX2-203ENST00000441443 CDCA8Q53HL2 280 aa25.77■■□□□ 1.72
SHOX2-203ENST00000441443 RRP7AQ9Y3A4 280 aaKnown RBP25.76■■□□□ 1.71
SHOX2-203ENST00000441443 TRPM2O94759 1503 aa25.75■■□□□ 1.71
SHOX2-203ENST00000441443 PTPRTO14522 1441 aa25.74■■□□□ 1.71
SHOX2-203ENST00000441443 TRAK1Q9UPV9 953 aa25.74■■□□□ 1.71
SHOX2-203ENST00000441443 RARSP54136 660 aaKnown RBP25.73■■□□□ 1.71
SHOX2-203ENST00000441443 MFAP1P55081 439 aaKnown RBP25.73■■□□□ 1.71
SHOX2-203ENST00000441443 NINLQ9Y2I6 1382 aa25.72■■□□□ 1.71
SHOX2-203ENST00000441443 CHMP5Q9NZZ3 219 aa25.72■■□□□ 1.71
SHOX2-203ENST00000441443 CD109Q6YHK3 1445 aa25.72■■□□□ 1.71
SHOX2-203ENST00000441443 ZMYND15Q9H091 742 aa25.72■■□□□ 1.71
SHOX2-203ENST00000441443 SCAF11Q99590 1463 aaKnown RBP25.72■■□□□ 1.71
SHOX2-203ENST00000441443 TMEM132EQ6IEE7 984 aa25.72■■□□□ 1.71
SHOX2-203ENST00000441443 ARAP3Q8WWN8 1544 aa25.71■■□□□ 1.71
SHOX2-203ENST00000441443 MRE11P49959 708 aa25.71■■□□□ 1.71
SHOX2-203ENST00000441443 MADDQ8WXG6 1647 aa25.71■■□□□ 1.71
SHOX2-203ENST00000441443 SPHKAPQ2M3C7 1700 aa25.7■■□□□ 1.71
SHOX2-203ENST00000441443 SYNMO15061 1565 aa25.7■■□□□ 1.71
SHOX2-203ENST00000441443 C22orf23Q9BZE7 217 aa25.7■■□□□ 1.7
SHOX2-203ENST00000441443 ABCA9Q8IUA7 1624 aa25.7■■□□□ 1.7
SHOX2-203ENST00000441443 MYH16Q9H6N6 1097 aa25.69■■□□□ 1.7
SHOX2-203ENST00000441443 TNNT2P45379 298 aaPredicted RBP25.69■■□□□ 1.7
SHOX2-203ENST00000441443 RNF17Q9BXT8 1623 aaKnown RBP25.69■■□□□ 1.7
SHOX2-203ENST00000441443 GRPEL1Q9HAV7 217 aa25.69■■□□□ 1.7
SHOX2-203ENST00000441443 RWDD1Q9H446 243 aaPredicted RBP25.68■■□□□ 1.7
SHOX2-203ENST00000441443 INO80Q9ULG1 1556 aaPredicted RBP25.68■■□□□ 1.7
SHOX2-203ENST00000441443 ERBB4Q15303 1308 aa25.67■■□□□ 1.7
SHOX2-203ENST00000441443 RRP9O43818 475 aaKnown RBP25.66■■□□□ 1.7
SHOX2-203ENST00000441443 NPC1L1Q9UHC9 1359 aa25.66■■□□□ 1.7
SHOX2-203ENST00000441443 TET3O43151 1660 aa25.66■■□□□ 1.7
SHOX2-203ENST00000441443 CARD14Q9BXL6 1004 aa25.66■■□□□ 1.7
SHOX2-203ENST00000441443 ESPNB1AK53 854 aa25.65■■□□□ 1.7
SHOX2-203ENST00000441443 SAFB2Q14151 953 aaKnown RBP eCLIP25.63■■□□□ 1.69
SHOX2-203ENST00000441443 STAC3Q96MF2 364 aa25.63■■□□□ 1.69
SHOX2-203ENST00000441443 ZNF518AQ6AHZ1 1483 aa25.63■■□□□ 1.69
SHOX2-203ENST00000441443 NGEFQ8N5V2 710 aa25.63■■□□□ 1.69
SHOX2-203ENST00000441443 NOS1P29475 1434 aa25.63■■□□□ 1.69
SHOX2-203ENST00000441443 IQGAP1P46940 1657 aa25.61■■□□□ 1.69
SHOX2-203ENST00000441443 CEP152O94986 1710 aa25.61■■□□□ 1.69
SHOX2-203ENST00000441443 CYB5RLQ6IPT4 315 aa25.6■■□□□ 1.69
SHOX2-203ENST00000441443 DEPDC5O75140 1603 aa25.6■■□□□ 1.69
SHOX2-203ENST00000441443 MYOM1P52179 1685 aa25.6■■□□□ 1.69
SHOX2-203ENST00000441443 TCP11L2Q8N4U5 519 aa25.6■■□□□ 1.69
SHOX2-203ENST00000441443 HSCBQ8IWL3 235 aa25.59■■□□□ 1.69
SHOX2-203ENST00000441443 KIDINS220Q9ULH0 1771 aa25.58■■□□□ 1.69
SHOX2-203ENST00000441443 ZMYM3Q14202 1370 aa25.58■■□□□ 1.69
SHOX2-203ENST00000441443 DDX11L8A8MPP1 907 aa25.58■■□□□ 1.68
SHOX2-203ENST00000441443 AAMPQ13685 434 aa25.58■■□□□ 1.68
SHOX2-203ENST00000441443 TRIM44Q96DX7 344 aaPredicted RBP25.58■■□□□ 1.68
SHOX2-203ENST00000441443 ZNF692Q9BU19 519 aaPredicted RBP25.57■■□□□ 1.68
SHOX2-203ENST00000441443 GAS2L3Q86XJ1 694 aa25.57■■□□□ 1.68
SHOX2-203ENST00000441443 MROH1Q8NDA8 1641 aa25.56■■□□□ 1.68
SHOX2-203ENST00000441443 SLC12A5Q9H2X9 1139 aa25.55■■□□□ 1.68
SHOX2-203ENST00000441443 MVPQ14764 893 aaKnown RBP25.55■■□□□ 1.68
SHOX2-203ENST00000441443 RUNDC1Q96C34 613 aa25.55■■□□□ 1.68
SHOX2-203ENST00000441443 VWDEQ8N2E2 1590 aa25.54■■□□□ 1.68
SHOX2-203ENST00000441443 NPATQ14207 1427 aa25.54■■□□□ 1.68
SHOX2-203ENST00000441443 FTSJ3Q8IY81 847 aaKnown RBP25.53■■□□□ 1.68
SHOX2-203ENST00000441443 STK26Q9P289 416 aa25.53■■□□□ 1.68
SHOX2-203ENST00000441443 EFCAB6Q5THR3 1501 aa25.53■■□□□ 1.68
SHOX2-203ENST00000441443 POGZQ7Z3K3 1410 aa25.52■■□□□ 1.68
SHOX2-203ENST00000441443 PPRC1Q5VV67 1664 aaKnown RBP25.52■■□□□ 1.68
SHOX2-203ENST00000441443 POLR3AO14802 1390 aaPredicted RBP25.51■■□□□ 1.67
SHOX2-203ENST00000441443 TNPO1Q92973 898 aaKnown RBP25.51■■□□□ 1.67
SHOX2-203ENST00000441443 MORC1Q86VD1 984 aa25.5■■□□□ 1.67
SHOX2-203ENST00000441443 DZIP1LQ8IYY4 767 aaKnown RBP25.49■■□□□ 1.67
SHOX2-203ENST00000441443 ERVK-7P63135 1459 aa25.48■■□□□ 1.67
SHOX2-203ENST00000441443 ABCA6Q8N139 1617 aa25.48■■□□□ 1.67
SHOX2-203ENST00000441443 KDM5AP29375 1690 aaKnown RBP25.48■■□□□ 1.67
SHOX2-203ENST00000441443 ZKSCAN2Q63HK3 967 aa25.48■■□□□ 1.67
SHOX2-203ENST00000441443 WDR63Q8IWG1 891 aa25.48■■□□□ 1.67
SHOX2-203ENST00000441443 FOXD4L1Q9NU39 408 aa25.48■■□□□ 1.67
SHOX2-203ENST00000441443 KIF1BO60333 1816 aa25.48■■□□□ 1.67
SHOX2-203ENST00000441443 MAP3K4Q9Y6R4 1608 aa25.47■■□□□ 1.67
SHOX2-203ENST00000441443 DDIT3P35638 169 aa25.46■■□□□ 1.67
SHOX2-203ENST00000441443 PHF23Q9BUL5 403 aaPredicted RBP25.46■■□□□ 1.67
SHOX2-203ENST00000441443 ISY1Q9ULR0 285 aaKnown RBP25.46■■□□□ 1.67
SHOX2-203ENST00000441443 MROH2AA6NES4 1674 aa25.45■■□□□ 1.66
SHOX2-203ENST00000441443 C14orf93Q9H972 538 aaKnown RBP25.45■■□□□ 1.66
SHOX2-203ENST00000441443 HSP90AB1P08238 724 aaKnown RBP25.44■■□□□ 1.66
SHOX2-203ENST00000441443 TSR2Q969E8 191 aaKnown RBP25.44■■□□□ 1.66
SHOX2-203ENST00000441443 ITPRIPQ8IWB1 547 aa25.44■■□□□ 1.66
SHOX2-203ENST00000441443 IDI1Q13907 227 aa25.43■■□□□ 1.66
SHOX2-203ENST00000441443 MYOM2P54296 1465 aa25.42■■□□□ 1.66
SHOX2-203ENST00000441443 GBP4Q96PP9 640 aa25.42■■□□□ 1.66
SHOX2-203ENST00000441443 SMC4Q9NTJ3 1288 aa25.42■■□□□ 1.66
SHOX2-203ENST00000441443 MTHFSP49914 203 aa25.41■■□□□ 1.66
SHOX2-203ENST00000441443 CABP2Q9NPB3 220 aa25.41■■□□□ 1.66
SHOX2-203ENST00000441443 NCOA3Q9Y6Q9 1424 aa25.41■■□□□ 1.66
SHOX2-203ENST00000441443 SLC24A1O60721 1099 aa25.4■■□□□ 1.66
SHOX2-203ENST00000441443 TRIM27P14373 513 aa25.4■■□□□ 1.66
SHOX2-203ENST00000441443 FRMPD1Q5SYB0 1578 aa25.4■■□□□ 1.66
SHOX2-203ENST00000441443 KIAA1211Q6ZU35 1233 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms