RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 HSPA1LP34931 641 aa26■■□□□ 1.75
CPSF4-205ENST00000440514 TRAK1Q9UPV9 953 aa25.97■■□□□ 1.75
CPSF4-205ENST00000440514 NBPF1Q3BBV0 1214 aa25.95■■□□□ 1.74
CPSF4-205ENST00000440514 PRAM1Q96QH2 718 aa25.95■■□□□ 1.74
CPSF4-205ENST00000440514 SAFB2Q14151 953 aaKnown RBP eCLIP25.94■■□□□ 1.74
CPSF4-205ENST00000440514 SIRT1Q96EB6 747 aa25.94■■□□□ 1.74
CPSF4-205ENST00000440514 FMN2Q9NZ56 1722 aa25.93■■□□□ 1.74
CPSF4-205ENST00000440514 C1orf167Q5SNV9 1468 aa25.91■■□□□ 1.74
CPSF4-205ENST00000440514 PHLPP1O60346 1717 aa25.91■■□□□ 1.74
CPSF4-205ENST00000440514 ADGRB2O60241 1585 aa25.9■■□□□ 1.74
CPSF4-205ENST00000440514 NBPF8Q3BBV2 869 aa25.9■■□□□ 1.74
CPSF4-205ENST00000440514 POGKQ9P215 609 aa25.9■■□□□ 1.74
CPSF4-205ENST00000440514 AHDC1Q5TGY3 1603 aaPredicted RBP25.88■■□□□ 1.73
CPSF4-205ENST00000440514 BRINP3Q76B58 766 aa25.88■■□□□ 1.73
CPSF4-205ENST00000440514 CLSPNQ9HAW4 1339 aa25.88■■□□□ 1.73
CPSF4-205ENST00000440514 CCER1Q8TC90 406 aaPredicted RBP25.87■■□□□ 1.73
CPSF4-205ENST00000440514 NHSL1Q5SYE7 1610 aa25.87■■□□□ 1.73
CPSF4-205ENST00000440514 COL16A1Q07092 1604 aaPredicted RBP25.86■■□□□ 1.73
CPSF4-205ENST00000440514 ROCK2O75116 1388 aaKnown RBP25.85■■□□□ 1.73
CPSF4-205ENST00000440514 RALGAPBQ86X10 1494 aa25.84■■□□□ 1.73
CPSF4-205ENST00000440514 MINK1Q8N4C8 1332 aaPredicted RBP25.84■■□□□ 1.73
CPSF4-205ENST00000440514 NUTM2FA1L443 756 aa25.83■■□□□ 1.73
CPSF4-205ENST00000440514 HIRIP3Q9BW71 556 aaPredicted RBP25.82■■□□□ 1.72
CPSF4-205ENST00000440514 QRICH2Q9H0J4 1663 aa25.81■■□□□ 1.72
CPSF4-205ENST00000440514 ORAI2Q96SN7 254 aa25.81■■□□□ 1.72
CPSF4-205ENST00000440514 USP32Q8NFA0 1604 aa25.81■■□□□ 1.72
CPSF4-205ENST00000440514 RGPD8O14715 1765 aaPredicted RBP25.79■■□□□ 1.72
CPSF4-205ENST00000440514 GPRASP1Q5JY77 1395 aa25.79■■□□□ 1.72
CPSF4-205ENST00000440514 DDX17Q92841 729 aaKnown RBP25.77■■□□□ 1.72
CPSF4-205ENST00000440514 KIF1AQ12756 1690 aa25.75■■□□□ 1.71
CPSF4-205ENST00000440514 TULP4Q9NRJ4 1543 aa25.75■■□□□ 1.71
CPSF4-205ENST00000440514 CENPJQ9HC77 1338 aaPredicted RBP25.75■■□□□ 1.71
CPSF4-205ENST00000440514 ESCO1Q5FWF5 840 aa25.74■■□□□ 1.71
CPSF4-205ENST00000440514 MED1Q15648 1581 aaPredicted RBP25.73■■□□□ 1.71
CPSF4-205ENST00000440514 ANKARQ7Z5J8 1434 aa25.73■■□□□ 1.71
CPSF4-205ENST00000440514 WASLO00401 505 aaPredicted RBP25.71■■□□□ 1.71
CPSF4-205ENST00000440514 EIF3AQ14152 1382 aaKnown RBP25.7■■□□□ 1.71
CPSF4-205ENST00000440514 CARD11Q9BXL7 1154 aa25.7■■□□□ 1.7
CPSF4-205ENST00000440514 SHPRHQ149N8 1683 aa25.7■■□□□ 1.7
CPSF4-205ENST00000440514 PRR36Q9H6K5 1346 aa25.69■■□□□ 1.7
CPSF4-205ENST00000440514 ATP7BP35670 1465 aa25.69■■□□□ 1.7
CPSF4-205ENST00000440514 JCADQ9P266 1359 aa25.69■■□□□ 1.7
CPSF4-205ENST00000440514 PXDNQ92626 1479 aa25.68■■□□□ 1.7
CPSF4-205ENST00000440514 TIMELESSQ9UNS1 1208 aa25.68■■□□□ 1.7
CPSF4-205ENST00000440514 ITSN1Q15811 1721 aa25.67■■□□□ 1.7
CPSF4-205ENST00000440514 TOPAZ1Q8N9V7 1692 aa25.67■■□□□ 1.7
CPSF4-205ENST00000440514 NPHP3Q7Z494 1330 aa25.64■■□□□ 1.7
CPSF4-205ENST00000440514 FOXO3O43524 673 aa25.64■■□□□ 1.7
CPSF4-205ENST00000440514 XPCQ01831 940 aaPredicted RBP25.64■■□□□ 1.7
CPSF4-205ENST00000440514 CDK19Q9BWU1 502 aa25.64■■□□□ 1.7
CPSF4-205ENST00000440514 PHF8Q9UPP1 1060 aa25.64■■□□□ 1.7
CPSF4-205ENST00000440514 SOS2Q07890 1332 aaPredicted RBP25.63■■□□□ 1.69
CPSF4-205ENST00000440514 PNPLA6Q8IY17 1366 aa25.6■■□□□ 1.69
CPSF4-205ENST00000440514 PMFBP1Q8TBY8 1022 aa25.6■■□□□ 1.69
CPSF4-205ENST00000440514 LRP6O75581 1613 aa25.59■■□□□ 1.69
CPSF4-205ENST00000440514 NUDT16Q96DE0 195 aaKnown RBP25.59■■□□□ 1.69
CPSF4-205ENST00000440514 LRRC59Q96AG4 307 aaKnown RBP25.58■■□□□ 1.69
CPSF4-205ENST00000440514 DISP3Q9P2K9 1392 aa25.57■■□□□ 1.68
CPSF4-205ENST00000440514 SRPK2P78362 688 aaKnown RBP25.57■■□□□ 1.68
CPSF4-205ENST00000440514 CABP2Q9NPB3 220 aa25.56■■□□□ 1.68
CPSF4-205ENST00000440514 SBNO2Q9Y2G9 1366 aa25.56■■□□□ 1.68
CPSF4-205ENST00000440514 COL22A1Q8NFW1 1626 aaPredicted RBP25.55■■□□□ 1.68
CPSF4-205ENST00000440514 TRPM3Q9HCF6 1732 aaPredicted RBP25.54■■□□□ 1.68
CPSF4-205ENST00000440514 KRT28Q7Z3Y7 464 aa25.54■■□□□ 1.68
CPSF4-205ENST00000440514 SPATA31A6Q5VVP1 1343 aa25.54■■□□□ 1.68
CPSF4-205ENST00000440514 EVC2Q86UK5 1308 aa25.54■■□□□ 1.68
CPSF4-205ENST00000440514 USP47Q96K76 1375 aa25.53■■□□□ 1.68
CPSF4-205ENST00000440514 PPIP5K1Q6PFW1 1433 aa25.52■■□□□ 1.68
CPSF4-205ENST00000440514 TNS3Q68CZ2 1445 aa25.51■■□□□ 1.67
CPSF4-205ENST00000440514 NUTM2BA6NNL0 878 aaPredicted RBP25.5■■□□□ 1.67
CPSF4-205ENST00000440514 NUTM2EB1AL46 878 aaPredicted RBP25.5■■□□□ 1.67
CPSF4-205ENST00000440514 NUTM2AQ8IVF1 878 aaPredicted RBP25.5■■□□□ 1.67
CPSF4-205ENST00000440514 SPATA31A3Q5VYP0 1347 aa25.49■■□□□ 1.67
CPSF4-205ENST00000440514 PSME1Q06323 249 aa25.49■■□□□ 1.67
CPSF4-205ENST00000440514 NGDNQ8NEJ9 315 aaKnown RBP25.49■■□□□ 1.67
CPSF4-205ENST00000440514 CCDC61Q9Y6R9 512 aa25.49■■□□□ 1.67
CPSF4-205ENST00000440514 ST20-MTHFSA0A0A6YYL1 179 aa25.48■■□□□ 1.67
CPSF4-205ENST00000440514 SBNO1A3KN83 1393 aa25.47■■□□□ 1.67
CPSF4-205ENST00000440514 POLR3AO14802 1390 aaPredicted RBP25.47■■□□□ 1.67
CPSF4-205ENST00000440514 ALS2Q96Q42 1657 aa25.47■■□□□ 1.67
CPSF4-205ENST00000440514 PHF23Q9BUL5 403 aaPredicted RBP25.46■■□□□ 1.67
CPSF4-205ENST00000440514 ACEP12821 1306 aa25.45■■□□□ 1.66
CPSF4-205ENST00000440514 TESK2Q96S53 571 aa25.45■■□□□ 1.66
CPSF4-205ENST00000440514 ABCA3Q99758 1704 aa25.45■■□□□ 1.66
CPSF4-205ENST00000440514 PLEKHG3A1L390 1219 aa25.44■■□□□ 1.66
CPSF4-205ENST00000440514 MEX3CQ5U5Q3 659 aaKnown RBP25.43■■□□□ 1.66
CPSF4-205ENST00000440514 ATAD2Q6PL18 1390 aa25.43■■□□□ 1.66
CPSF4-205ENST00000440514 LMOD2Q6P5Q4 547 aa25.41■■□□□ 1.66
CPSF4-205ENST00000440514 CABP1Q9NZU7 370 aa25.41■■□□□ 1.66
CPSF4-205ENST00000440514 AKAP12Q02952 1782 aa25.4■■□□□ 1.66
CPSF4-205ENST00000440514 ARHGEF10O15013 1369 aa25.4■■□□□ 1.66
CPSF4-205ENST00000440514 MARF1Q9Y4F3 1742 aaKnown RBP25.38■■□□□ 1.65
CPSF4-205ENST00000440514 PLEKHG5O94827 1062 aa25.38■■□□□ 1.65
CPSF4-205ENST00000440514 CRYBG1Q9Y4K1 1723 aa25.37■■□□□ 1.65
CPSF4-205ENST00000440514 PAK3O75914 559 aaPredicted RBP25.37■■□□□ 1.65
CPSF4-205ENST00000440514 ADAMTS2O95450 1211 aa25.37■■□□□ 1.65
CPSF4-205ENST00000440514 RGS17Q9UGC6 210 aaPredicted RBP25.37■■□□□ 1.65
CPSF4-205ENST00000440514 USP6P35125 1406 aa25.36■■□□□ 1.65
CPSF4-205ENST00000440514 NRKQ7Z2Y5 1582 aa25.35■■□□□ 1.65
CPSF4-205ENST00000440514 CABLES1Q8TDN4 633 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 143.7 ms