RNA–Protein interactions for RNA: ENST00000439374.6

CDC42SE1-202, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CDC42SE1, Length 3,498 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-202ENST00000439374 PRAM1Q96QH2 718 aa12.6□□□□□ -0.39
CDC42SE1-202ENST00000439374 IDI1Q13907 227 aa12.59□□□□□ -0.39
CDC42SE1-202ENST00000439374 CGNL1Q0VF96 1302 aa12.59□□□□□ -0.39
CDC42SE1-202ENST00000439374 XRCC6P12956 609 aaKnown RBP eCLIP12.59□□□□□ -0.39
CDC42SE1-202ENST00000439374 KDM5DQ9BY66 1539 aa12.59□□□□□ -0.39
CDC42SE1-202ENST00000439374 VGFO15240 615 aaPredicted RBP12.58□□□□□ -0.4
CDC42SE1-202ENST00000439374 DUOX2Q9NRD8 1548 aa12.58□□□□□ -0.4
CDC42SE1-202ENST00000439374 SCAF11Q99590 1463 aaKnown RBP12.58□□□□□ -0.4
CDC42SE1-202ENST00000439374 RUNDC1Q96C34 613 aa12.58□□□□□ -0.4
CDC42SE1-202ENST00000439374 ABCC2Q92887 1545 aa12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 EVC2Q86UK5 1308 aa12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 A0A0U1RQG5 324 aaPredicted RBP12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 APBB1O00213 710 aa12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 WAPLQ7Z5K2 1190 aa12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 THUMPD2Q9BTF0 503 aaKnown RBP12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 GPRASP1Q5JY77 1395 aa12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 FOXD4L6Q3SYB3 417 aaPredicted RBP12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 FOXD4L3Q6VB84 417 aaPredicted RBP12.57□□□□□ -0.4
CDC42SE1-202ENST00000439374 CDC42BPBQ9Y5S2 1711 aa12.56□□□□□ -0.4
CDC42SE1-202ENST00000439374 MYH16Q9H6N6 1097 aa12.56□□□□□ -0.4
CDC42SE1-202ENST00000439374 L1TD1Q5T7N2 865 aaKnown RBP12.56□□□□□ -0.4
CDC42SE1-202ENST00000439374 TBC1D2Q9BYX2 928 aa12.56□□□□□ -0.4
CDC42SE1-202ENST00000439374 EXOSC9Q06265 439 aaKnown RBP12.56□□□□□ -0.4
CDC42SE1-202ENST00000439374 CABP1Q9NZU7 370 aa12.56□□□□□ -0.4
CDC42SE1-202ENST00000439374 FAM69CQ0P6D2 419 aa12.55□□□□□ -0.4
CDC42SE1-202ENST00000439374 RIPK4P57078 832 aa12.55□□□□□ -0.4
CDC42SE1-202ENST00000439374 ASXL2Q76L83 1435 aa12.55□□□□□ -0.4
CDC42SE1-202ENST00000439374 TRAK2O60296 914 aa12.54□□□□□ -0.4
CDC42SE1-202ENST00000439374 PDZRN3Q9UPQ7 1066 aa12.54□□□□□ -0.4
CDC42SE1-202ENST00000439374 RLBP1P12271 317 aa12.54□□□□□ -0.4
CDC42SE1-202ENST00000439374 HSP90AB1P08238 724 aaKnown RBP12.54□□□□□ -0.4
CDC42SE1-202ENST00000439374 ARHGEF5Q12774 1597 aa12.54□□□□□ -0.4
CDC42SE1-202ENST00000439374 FAM13BQ9NYF5 915 aa12.53□□□□□ -0.4
CDC42SE1-202ENST00000439374 CD109Q6YHK3 1445 aa12.53□□□□□ -0.4
CDC42SE1-202ENST00000439374 BCL11BQ9C0K0 894 aaPredicted RBP12.53□□□□□ -0.4
CDC42SE1-202ENST00000439374 CROCC2H7BZ55 1655 aa12.53□□□□□ -0.4
CDC42SE1-202ENST00000439374 ADCY10Q96PN6 1610 aa12.53□□□□□ -0.4
CDC42SE1-202ENST00000439374 ATP10AO60312 1499 aa12.52□□□□□ -0.4
CDC42SE1-202ENST00000439374 HDGFL2Q7Z4V5 671 aaPredicted RBP12.52□□□□□ -0.4
CDC42SE1-202ENST00000439374 C14orf93Q9H972 538 aaKnown RBP12.52□□□□□ -0.41
CDC42SE1-202ENST00000439374 WDR7Q9Y4E6 1490 aa12.52□□□□□ -0.41
CDC42SE1-202ENST00000439374 PREX2Q70Z35 1606 aa12.51□□□□□ -0.41
CDC42SE1-202ENST00000439374 KDM2BQ8NHM5 1336 aa12.51□□□□□ -0.41
CDC42SE1-202ENST00000439374 C1orf115Q9H7X2 142 aa12.51□□□□□ -0.41
CDC42SE1-202ENST00000439374 TERF2IPQ9NYB0 399 aa12.51□□□□□ -0.41
CDC42SE1-202ENST00000439374 RARSP54136 660 aaKnown RBP12.51□□□□□ -0.41
CDC42SE1-202ENST00000439374 PCDHB15Q9Y5E8 787 aa12.51□□□□□ -0.41
CDC42SE1-202ENST00000439374 C14orf37Q86TY3 774 aa12.5□□□□□ -0.41
CDC42SE1-202ENST00000439374 TXNDC2Q86VQ3 553 aa12.5□□□□□ -0.41
CDC42SE1-202ENST00000439374 HSCBQ8IWL3 235 aa12.5□□□□□ -0.41
CDC42SE1-202ENST00000439374 NCKAP5LQ9HCH0 1330 aa12.5□□□□□ -0.41
CDC42SE1-202ENST00000439374 CDK19Q9BWU1 502 aa12.5□□□□□ -0.41
CDC42SE1-202ENST00000439374 LNPKQ9C0E8 428 aa12.5□□□□□ -0.41
CDC42SE1-202ENST00000439374 NOL8Q76FK4 1167 aaKnown RBP12.5□□□□□ -0.41
CDC42SE1-202ENST00000439374 MCM4P33991 863 aa12.49□□□□□ -0.41
CDC42SE1-202ENST00000439374 STAC3Q96MF2 364 aa12.49□□□□□ -0.41
CDC42SE1-202ENST00000439374 PRDM10Q9NQV6 1147 aa12.49□□□□□ -0.41
CDC42SE1-202ENST00000439374 ZRANB1Q9UGI0 708 aa12.49□□□□□ -0.41
CDC42SE1-202ENST00000439374 ASXL1Q8IXJ9 1541 aa12.49□□□□□ -0.41
CDC42SE1-202ENST00000439374 DIAPH1O60610 1272 aaKnown RBP12.49□□□□□ -0.41
CDC42SE1-202ENST00000439374 ZKSCAN2Q63HK3 967 aa12.49□□□□□ -0.41
CDC42SE1-202ENST00000439374 MAST1Q9Y2H9 1570 aa12.48□□□□□ -0.41
CDC42SE1-202ENST00000439374 DZIP1LQ8IYY4 767 aaKnown RBP12.48□□□□□ -0.41
CDC42SE1-202ENST00000439374 RWDD1Q9H446 243 aaPredicted RBP12.48□□□□□ -0.41
CDC42SE1-202ENST00000439374 PRKAR2BP31323 418 aa12.48□□□□□ -0.41
CDC42SE1-202ENST00000439374 RRS1Q15050 365 aaKnown RBP12.48□□□□□ -0.41
CDC42SE1-202ENST00000439374 C22orf23Q9BZE7 217 aa12.47□□□□□ -0.41
CDC42SE1-202ENST00000439374 NOB1Q9ULX3 412 aaKnown RBP12.47□□□□□ -0.41
CDC42SE1-202ENST00000439374 TRPM1Q7Z4N2 1603 aa12.47□□□□□ -0.41
CDC42SE1-202ENST00000439374 BLMP54132 1417 aaPredicted RBP12.47□□□□□ -0.41
CDC42SE1-202ENST00000439374 DCTN1Q14203 1278 aa12.47□□□□□ -0.41
CDC42SE1-202ENST00000439374 MYO5CQ9NQX4 1742 aa12.46□□□□□ -0.41
CDC42SE1-202ENST00000439374 NKTRP30414 1462 aaKnown RBP12.46□□□□□ -0.41
CDC42SE1-202ENST00000439374 SSH1Q8WYL5 1049 aa12.46□□□□□ -0.41
CDC42SE1-202ENST00000439374 PLCB2Q00722 1185 aa12.46□□□□□ -0.42
CDC42SE1-202ENST00000439374 ANP32BQ92688 251 aaKnown RBP12.46□□□□□ -0.42
CDC42SE1-202ENST00000439374 ESPNB1AK53 854 aa12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 TMPOP42166 694 aaKnown RBP12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 PMFBP1Q8TBY8 1022 aa12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 CHAMP1Q96JM3 812 aa12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 RBM42Q9BTD8 480 aaKnown RBP12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 GRPEL1Q9HAV7 217 aa12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 EMILIN1Q9Y6C2 1016 aa12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 USP19O94966 1318 aa12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 R3HCC1Q9Y3T6 440 aaKnown RBP12.45□□□□□ -0.42
CDC42SE1-202ENST00000439374 PRDM15P57071 1507 aaPredicted RBP12.44□□□□□ -0.42
CDC42SE1-202ENST00000439374 ZNF521Q96K83 1311 aa12.44□□□□□ -0.42
CDC42SE1-202ENST00000439374 PDE3AQ14432 1141 aa12.44□□□□□ -0.42
CDC42SE1-202ENST00000439374 ERBB4Q15303 1308 aa12.44□□□□□ -0.42
CDC42SE1-202ENST00000439374 FYB1O15117 783 aa12.44□□□□□ -0.42
CDC42SE1-202ENST00000439374 ZCCHC11Q5TAX3 1644 aaKnown RBP12.44□□□□□ -0.42
CDC42SE1-202ENST00000439374 ATP7AQ04656 1500 aa12.44□□□□□ -0.42
CDC42SE1-202ENST00000439374 NUTM2GQ5VZR2 741 aa12.43□□□□□ -0.42
CDC42SE1-202ENST00000439374 RNF214Q8ND24 703 aa12.43□□□□□ -0.42
CDC42SE1-202ENST00000439374 KIAA1211Q6ZU35 1233 aa12.43□□□□□ -0.42
CDC42SE1-202ENST00000439374 NME9Q86XW9 330 aa12.43□□□□□ -0.42
CDC42SE1-202ENST00000439374 NECTIN2Q92692 538 aa12.43□□□□□ -0.42
CDC42SE1-202ENST00000439374 DNTTIP2Q5QJE6 756 aaKnown RBP12.43□□□□□ -0.42
CDC42SE1-202ENST00000439374 ANKRD45Q5TZF3 282 aa12.43□□□□□ -0.42
CDC42SE1-202ENST00000439374 ABCC1P33527 1531 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms