RNA–Protein interactions for RNA: ENST00000438862.6

CSTF3-203, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 1 (best) BASIC

Gene CSTF3, Length 1,132 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-203ENST00000438862 TRPM2O94759 1503 aa17.52■□□□□ 0.39
CSTF3-203ENST00000438862 CHGAP10645 457 aaKnown RBP17.51■□□□□ 0.39
CSTF3-203ENST00000438862 MST1RQ04912 1400 aa17.51■□□□□ 0.39
CSTF3-203ENST00000438862 USP21Q9UK80 565 aa17.51■□□□□ 0.39
CSTF3-203ENST00000438862 CHIC2Q9UKJ5 165 aa17.51■□□□□ 0.39
CSTF3-203ENST00000438862 PTPN23Q9H3S7 1636 aa17.5■□□□□ 0.39
CSTF3-203ENST00000438862 ADAMTS2O95450 1211 aa17.5■□□□□ 0.39
CSTF3-203ENST00000438862 MKRN4PQ13434 485 aaPredicted RBP17.5■□□□□ 0.39
CSTF3-203ENST00000438862 VPS8Q8N3P4 1428 aa17.49■□□□□ 0.39
CSTF3-203ENST00000438862 PTPRUQ92729 1446 aa17.48■□□□□ 0.39
CSTF3-203ENST00000438862 SPDYE2BA6NHP3 402 aa17.48■□□□□ 0.39
CSTF3-203ENST00000438862 SPDYE6P0CI01 402 aa17.48■□□□□ 0.39
CSTF3-203ENST00000438862 SPDYE2Q495Y8 402 aa17.48■□□□□ 0.39
CSTF3-203ENST00000438862 FNBP4Q8N3X1 1017 aaPredicted RBP17.48■□□□□ 0.39
CSTF3-203ENST00000438862 DDX17Q92841 729 aaKnown RBP17.46■□□□□ 0.39
CSTF3-203ENST00000438862 PTCH1Q13635 1447 aa17.44■□□□□ 0.38
CSTF3-203ENST00000438862 ATRNO75882 1429 aa17.43■□□□□ 0.38
CSTF3-203ENST00000438862 XRN1Q8IZH2 1706 aaKnown RBP17.42■□□□□ 0.38
CSTF3-203ENST00000438862 UNC13BO14795 1591 aa17.42■□□□□ 0.38
CSTF3-203ENST00000438862 EP400Q96L91 3159 aa17.42■□□□□ 0.38
CSTF3-203ENST00000438862 ADGRL3Q9HAR2 1447 aa17.4■□□□□ 0.38
CSTF3-203ENST00000438862 ANKRD50Q9ULJ7 1429 aa17.4■□□□□ 0.38
CSTF3-203ENST00000438862 ADGRL2O95490 1459 aa17.4■□□□□ 0.38
CSTF3-203ENST00000438862 SOS2Q07890 1332 aaPredicted RBP17.4■□□□□ 0.38
CSTF3-203ENST00000438862 LAMC1P11047 1609 aa17.39■□□□□ 0.37
CSTF3-203ENST00000438862 BLMP54132 1417 aaPredicted RBP17.37■□□□□ 0.37
CSTF3-203ENST00000438862 C1orf167Q5SNV9 1468 aa17.37■□□□□ 0.37
CSTF3-203ENST00000438862 GJD4Q96KN9 370 aaPredicted RBP17.36■□□□□ 0.37
CSTF3-203ENST00000438862 LRP5O75197 1615 aa17.35■□□□□ 0.37
CSTF3-203ENST00000438862 E9PCH4 1651 aa17.34■□□□□ 0.37
CSTF3-203ENST00000438862 HAX1O00165 279 aa17.34■□□□□ 0.37
CSTF3-203ENST00000438862 METP08581 1390 aa17.34■□□□□ 0.37
CSTF3-203ENST00000438862 BCL9LQ86UU0 1499 aa17.34■□□□□ 0.37
CSTF3-203ENST00000438862 NRXN3Q9Y4C0 1643 aa17.34■□□□□ 0.37
CSTF3-203ENST00000438862 SF3B2Q13435 895 aaKnown RBP17.33■□□□□ 0.36
CSTF3-203ENST00000438862 NALCNQ8IZF0 1738 aa17.33■□□□□ 0.36
CSTF3-203ENST00000438862 COL22A1Q8NFW1 1626 aaPredicted RBP17.32■□□□□ 0.36
CSTF3-203ENST00000438862 ORAI2Q96SN7 254 aa17.32■□□□□ 0.36
CSTF3-203ENST00000438862 DEFB132Q7Z7B7 95 aa17.3■□□□□ 0.36
CSTF3-203ENST00000438862 IQGAP3Q86VI3 1631 aa17.29■□□□□ 0.36
CSTF3-203ENST00000438862 SSUH2Q9Y2M2 353 aa17.29■□□□□ 0.36
CSTF3-203ENST00000438862 MARF1Q9Y4F3 1742 aaKnown RBP17.28■□□□□ 0.36
CSTF3-203ENST00000438862 ZNF326Q5BKZ1 582 aaKnown RBP17.28■□□□□ 0.36
CSTF3-203ENST00000438862 MYOM2P54296 1465 aa17.28■□□□□ 0.36
CSTF3-203ENST00000438862 NPHP3Q7Z494 1330 aa17.26■□□□□ 0.35
CSTF3-203ENST00000438862 EVX2Q03828 476 aa17.26■□□□□ 0.35
CSTF3-203ENST00000438862 UNC5CLQ8IV45 518 aa17.26■□□□□ 0.35
CSTF3-203ENST00000438862 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.25■□□□□ 0.35
CSTF3-203ENST00000438862 FAM50AQ14320 339 aaKnown RBP17.25■□□□□ 0.35
CSTF3-203ENST00000438862 SPHKAPQ2M3C7 1700 aa17.24■□□□□ 0.35
CSTF3-203ENST00000438862 ZNF692Q9BU19 519 aaPredicted RBP17.24■□□□□ 0.35
CSTF3-203ENST00000438862 HRCP23327 699 aa17.23■□□□□ 0.35
CSTF3-203ENST00000438862 RALGAPBQ86X10 1494 aa17.23■□□□□ 0.35
CSTF3-203ENST00000438862 BRWD3Q6RI45 1802 aa17.21■□□□□ 0.35
CSTF3-203ENST00000438862 GLI3P10071 1580 aa17.21■□□□□ 0.35
CSTF3-203ENST00000438862 NUP155O75694 1391 aa17.21■□□□□ 0.35
CSTF3-203ENST00000438862 SEPT12Q8IYM1 358 aa17.21■□□□□ 0.35
CSTF3-203ENST00000438862 ESCO1Q5FWF5 840 aa17.2■□□□□ 0.34
CSTF3-203ENST00000438862 SPDYE1Q8NFV5 336 aaPredicted RBP17.2■□□□□ 0.34
CSTF3-203ENST00000438862 CLEC11AQ9Y240 323 aa17.2■□□□□ 0.34
CSTF3-203ENST00000438862 SLIT2O94813 1529 aa17.2■□□□□ 0.34
CSTF3-203ENST00000438862 LRPPRCP42704 1394 aaKnown RBP17.19■□□□□ 0.34
CSTF3-203ENST00000438862 PSDA5PKW4 1024 aaPredicted RBP17.19■□□□□ 0.34
CSTF3-203ENST00000438862 ONECUT3O60422 494 aaPredicted RBP17.19■□□□□ 0.34
CSTF3-203ENST00000438862 BAG6P46379 1132 aa17.19■□□□□ 0.34
CSTF3-203ENST00000438862 PXDNQ92626 1479 aa17.18■□□□□ 0.34
CSTF3-203ENST00000438862 ROBO2Q9HCK4 1378 aa17.18■□□□□ 0.34
CSTF3-203ENST00000438862 HFM1A2PYH4 1435 aa17.17■□□□□ 0.34
CSTF3-203ENST00000438862 FOXO3O43524 673 aa17.17■□□□□ 0.34
CSTF3-203ENST00000438862 KRT27Q7Z3Y8 459 aa17.17■□□□□ 0.34
CSTF3-203ENST00000438862 PRAG1Q86YV5 1406 aa17.16■□□□□ 0.34
CSTF3-203ENST00000438862 LOC105371045A0A1W2PR82 267 aa17.16■□□□□ 0.34
CSTF3-203ENST00000438862 PRKAR2AP13861 404 aaKnown RBP17.16■□□□□ 0.34
CSTF3-203ENST00000438862 VPS72Q15906 364 aa17.16■□□□□ 0.34
CSTF3-203ENST00000438862 NEXMIFQ5QGS0 1516 aa17.16■□□□□ 0.34
CSTF3-203ENST00000438862 ROCK1Q13464 1354 aa17.15■□□□□ 0.34
CSTF3-203ENST00000438862 VGFO15240 615 aaPredicted RBP17.15■□□□□ 0.34
CSTF3-203ENST00000438862 XPCQ01831 940 aaPredicted RBP17.14■□□□□ 0.33
CSTF3-203ENST00000438862 SPATA31A3Q5VYP0 1347 aa17.12■□□□□ 0.33
CSTF3-203ENST00000438862 YY1P25490 414 aa17.11■□□□□ 0.33
CSTF3-203ENST00000438862 CDC42BPGQ6DT37 1551 aa17.11■□□□□ 0.33
CSTF3-203ENST00000438862 CCDC9Q9Y3X0 531 aaKnown RBP17.1■□□□□ 0.33
CSTF3-203ENST00000438862 KIF1BO60333 1816 aa17.09■□□□□ 0.33
CSTF3-203ENST00000438862 USP32Q8NFA0 1604 aa17.08■□□□□ 0.32
CSTF3-203ENST00000438862 HAP1P54257 671 aaPredicted RBP17.08■□□□□ 0.32
CSTF3-203ENST00000438862 EN1Q05925 392 aaPredicted RBP17.08■□□□□ 0.32
CSTF3-203ENST00000438862 R3HDM1Q15032 1099 aaKnown RBP17.08■□□□□ 0.32
CSTF3-203ENST00000438862 NWD2Q9ULI1 1742 aa17.07■□□□□ 0.32
CSTF3-203ENST00000438862 RPGRIP1LQ68CZ1 1315 aa17.07■□□□□ 0.32
CSTF3-203ENST00000438862 KRT28Q7Z3Y7 464 aa17.06■□□□□ 0.32
CSTF3-203ENST00000438862 CLTCL1P53675 1640 aa17.06■□□□□ 0.32
CSTF3-203ENST00000438862 A0A0G2JS52 829 aa17.05■□□□□ 0.32
CSTF3-203ENST00000438862 MYT1Q01538 1121 aa17.05■□□□□ 0.32
CSTF3-203ENST00000438862 CCDC144AA2RUR9 1427 aa17.04■□□□□ 0.32
CSTF3-203ENST00000438862 RGPD1P0DJD0 1748 aa17.04■□□□□ 0.32
CSTF3-203ENST00000438862 NAIPQ13075 1403 aa17.04■□□□□ 0.32
CSTF3-203ENST00000438862 NUTM2FA1L443 756 aa17.03■□□□□ 0.32
CSTF3-203ENST00000438862 PSME1Q06323 249 aa17.03■□□□□ 0.32
CSTF3-203ENST00000438862 PLCH1Q4KWH8 1693 aa17.03■□□□□ 0.32
CSTF3-203ENST00000438862 DISP2A7MBM2 1401 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms