RNA–Protein interactions for RNA: ENST00000430029.1

PTCD1-203, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 4

Gene PTCD1, Length 556 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-203ENST00000430029 TESK2Q96S53 571 aa27.32■■□□□ 1.96
PTCD1-203ENST00000430029 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.32■■□□□ 1.96
PTCD1-203ENST00000430029 LTBP4Q8N2S1 1624 aa27.31■■□□□ 1.96
PTCD1-203ENST00000430029 LRRC7Q96NW7 1537 aa27.3■■□□□ 1.96
PTCD1-203ENST00000430029 TMEM94Q12767 1356 aa27.28■■□□□ 1.96
PTCD1-203ENST00000430029 SBNO2Q9Y2G9 1366 aa27.28■■□□□ 1.96
PTCD1-203ENST00000430029 MINK1Q8N4C8 1332 aaPredicted RBP27.28■■□□□ 1.96
PTCD1-203ENST00000430029 XIRP1Q702N8 1843 aaKnown RBP27.26■■□□□ 1.95
PTCD1-203ENST00000430029 NALCNQ8IZF0 1738 aa27.24■■□□□ 1.95
PTCD1-203ENST00000430029 ADGRL3Q9HAR2 1447 aa27.23■■□□□ 1.95
PTCD1-203ENST00000430029 NCOA3Q9Y6Q9 1424 aa27.22■■□□□ 1.95
PTCD1-203ENST00000430029 ADGRB2O60241 1585 aa27.22■■□□□ 1.95
PTCD1-203ENST00000430029 TULP4Q9NRJ4 1543 aa27.21■■□□□ 1.95
PTCD1-203ENST00000430029 C11orf95C9JLR9 678 aaPredicted RBP27.2■■□□□ 1.94
PTCD1-203ENST00000430029 DISP3Q9P2K9 1392 aa27.2■■□□□ 1.94
PTCD1-203ENST00000430029 C14orf37Q86TY3 774 aa27.18■■□□□ 1.94
PTCD1-203ENST00000430029 WASLO00401 505 aaPredicted RBP27.16■■□□□ 1.94
PTCD1-203ENST00000430029 TMF1P82094 1093 aa27.16■■□□□ 1.94
PTCD1-203ENST00000430029 EVC2Q86UK5 1308 aa27.16■■□□□ 1.94
PTCD1-203ENST00000430029 CDK19Q9BWU1 502 aa27.15■■□□□ 1.94
PTCD1-203ENST00000430029 C19orf44Q9H6X5 657 aa27.15■■□□□ 1.94
PTCD1-203ENST00000430029 CDC42BPGQ6DT37 1551 aa27.14■■□□□ 1.94
PTCD1-203ENST00000430029 SLC24A1O60721 1099 aa27.14■■□□□ 1.94
PTCD1-203ENST00000430029 CABP2Q9NPB3 220 aa27.11■■□□□ 1.93
PTCD1-203ENST00000430029 MSH6P52701 1360 aa27.1■■□□□ 1.93
PTCD1-203ENST00000430029 ZNF316A6NFI3 1004 aaPredicted RBP27.1■■□□□ 1.93
PTCD1-203ENST00000430029 KIF7Q2M1P5 1343 aa27.1■■□□□ 1.93
PTCD1-203ENST00000430029 FMN2Q9NZ56 1722 aa27.1■■□□□ 1.93
PTCD1-203ENST00000430029 WASHC2AQ641Q2 1341 aa27.09■■□□□ 1.93
PTCD1-203ENST00000430029 DCCP43146 1447 aa27.08■■□□□ 1.93
PTCD1-203ENST00000430029 SRPK2P78362 688 aaKnown RBP27.08■■□□□ 1.93
PTCD1-203ENST00000430029 NUTM2FA1L443 756 aa27.07■■□□□ 1.92
PTCD1-203ENST00000430029 PRR36Q9H6K5 1346 aa27.07■■□□□ 1.92
PTCD1-203ENST00000430029 CCDC7Q96M83 1385 aa27.07■■□□□ 1.92
PTCD1-203ENST00000430029 USP32Q8NFA0 1604 aa27.06■■□□□ 1.92
PTCD1-203ENST00000430029 PUS7Q96PZ0 661 aaKnown RBP27.05■■□□□ 1.92
PTCD1-203ENST00000430029 ATP7BP35670 1465 aa27.05■■□□□ 1.92
PTCD1-203ENST00000430029 ATF3P18847 181 aa27.04■■□□□ 1.92
PTCD1-203ENST00000430029 CDCA8Q53HL2 280 aa27.04■■□□□ 1.92
PTCD1-203ENST00000430029 CADPS2Q86UW7 1296 aa27.03■■□□□ 1.92
PTCD1-203ENST00000430029 NUDT16Q96DE0 195 aaKnown RBP27.03■■□□□ 1.92
PTCD1-203ENST00000430029 POLR3GLQ9BT43 218 aa27.03■■□□□ 1.92
PTCD1-203ENST00000430029 MST1RQ04912 1400 aa27.02■■□□□ 1.92
PTCD1-203ENST00000430029 ANKARQ7Z5J8 1434 aa27.01■■□□□ 1.91
PTCD1-203ENST00000430029 RGPD8O14715 1765 aaPredicted RBP27.01■■□□□ 1.91
PTCD1-203ENST00000430029 IQSEC2Q5JU85 1478 aa27■■□□□ 1.91
PTCD1-203ENST00000430029 ATAD2Q6PL18 1390 aa27■■□□□ 1.91
PTCD1-203ENST00000430029 C1orf167Q5SNV9 1468 aa26.99■■□□□ 1.91
PTCD1-203ENST00000430029 TOPAZ1Q8N9V7 1692 aa26.98■■□□□ 1.91
PTCD1-203ENST00000430029 CCDC61Q9Y6R9 512 aa26.97■■□□□ 1.91
PTCD1-203ENST00000430029 MYOM1P52179 1685 aa26.97■■□□□ 1.91
PTCD1-203ENST00000430029 PPIP5K1Q6PFW1 1433 aa26.94■■□□□ 1.9
PTCD1-203ENST00000430029 SLC12A5Q9H2X9 1139 aa26.94■■□□□ 1.9
PTCD1-203ENST00000430029 CABP1Q9NZU7 370 aa26.94■■□□□ 1.9
PTCD1-203ENST00000430029 TMC1Q8TDI8 760 aa26.93■■□□□ 1.9
PTCD1-203ENST00000430029 ORAI2Q96SN7 254 aa26.93■■□□□ 1.9
PTCD1-203ENST00000430029 SLAIN2Q9P270 581 aa26.93■■□□□ 1.9
PTCD1-203ENST00000430029 ITSN1Q15811 1721 aa26.93■■□□□ 1.9
PTCD1-203ENST00000430029 PLEKHG3A1L390 1219 aa26.9■■□□□ 1.9
PTCD1-203ENST00000430029 ESCO1Q5FWF5 840 aa26.9■■□□□ 1.9
PTCD1-203ENST00000430029 PMFBP1Q8TBY8 1022 aa26.9■■□□□ 1.9
PTCD1-203ENST00000430029 CD163L1Q9NR16 1453 aa26.89■■□□□ 1.9
PTCD1-203ENST00000430029 NINLQ9Y2I6 1382 aa26.89■■□□□ 1.9
PTCD1-203ENST00000430029 PHF8Q9UPP1 1060 aa26.88■■□□□ 1.89
PTCD1-203ENST00000430029 BRINP3Q76B58 766 aa26.86■■□□□ 1.89
PTCD1-203ENST00000430029 TOM1O60784 492 aa26.85■■□□□ 1.89
PTCD1-203ENST00000430029 ACEP12821 1306 aa26.85■■□□□ 1.89
PTCD1-203ENST00000430029 POLR3AO14802 1390 aaPredicted RBP26.84■■□□□ 1.89
PTCD1-203ENST00000430029 CPSF1Q10570 1443 aaKnown RBP26.84■■□□□ 1.89
PTCD1-203ENST00000430029 UBAP1LF5GYI3 381 aa26.84■■□□□ 1.89
PTCD1-203ENST00000430029 DDX10Q13206 875 aaKnown RBP26.84■■□□□ 1.89
PTCD1-203ENST00000430029 PANK3Q9H999 370 aa26.83■■□□□ 1.89
PTCD1-203ENST00000430029 A0A1W2PP64 1363 aa26.83■■□□□ 1.88
PTCD1-203ENST00000430029 ANKRD36BQ8N2N9 1353 aa26.83■■□□□ 1.88
PTCD1-203ENST00000430029 KIF1AQ12756 1690 aa26.82■■□□□ 1.88
PTCD1-203ENST00000430029 AKAP12Q02952 1782 aa26.81■■□□□ 1.88
PTCD1-203ENST00000430029 NGDNQ8NEJ9 315 aaKnown RBP26.8■■□□□ 1.88
PTCD1-203ENST00000430029 FOXO3O43524 673 aa26.79■■□□□ 1.88
PTCD1-203ENST00000430029 CARD14Q9BXL6 1004 aa26.79■■□□□ 1.88
PTCD1-203ENST00000430029 TERF2IPQ9NYB0 399 aa26.79■■□□□ 1.88
PTCD1-203ENST00000430029 ROBO1Q9Y6N7 1651 aa26.79■■□□□ 1.88
PTCD1-203ENST00000430029 HDGFL2Q7Z4V5 671 aaPredicted RBP26.78■■□□□ 1.88
PTCD1-203ENST00000430029 DDX17Q92841 729 aaKnown RBP26.78■■□□□ 1.88
PTCD1-203ENST00000430029 PIP4K2BP78356 416 aa26.77■■□□□ 1.88
PTCD1-203ENST00000430029 MON2Q7Z3U7 1717 aa26.76■■□□□ 1.88
PTCD1-203ENST00000430029 USP6P35125 1406 aa26.75■■□□□ 1.87
PTCD1-203ENST00000430029 KTN1Q86UP2 1357 aaKnown RBP26.75■■□□□ 1.87
PTCD1-203ENST00000430029 ZNF692Q9BU19 519 aaPredicted RBP26.75■■□□□ 1.87
PTCD1-203ENST00000430029 PER1O15534 1290 aaPredicted RBP26.74■■□□□ 1.87
PTCD1-203ENST00000430029 XPCQ01831 940 aaPredicted RBP26.73■■□□□ 1.87
PTCD1-203ENST00000430029 SSH2Q76I76 1423 aa26.73■■□□□ 1.87
PTCD1-203ENST00000430029 NSD3Q9BZ95 1437 aa26.73■■□□□ 1.87
PTCD1-203ENST00000430029 NHSL1Q5SYE7 1610 aa26.72■■□□□ 1.87
PTCD1-203ENST00000430029 PSME1Q06323 249 aa26.72■■□□□ 1.87
PTCD1-203ENST00000430029 NRKQ7Z2Y5 1582 aa26.71■■□□□ 1.87
PTCD1-203ENST00000430029 NPHP3Q7Z494 1330 aa26.71■■□□□ 1.87
PTCD1-203ENST00000430029 KRT28Q7Z3Y7 464 aa26.71■■□□□ 1.87
PTCD1-203ENST00000430029 SCAF1Q9H7N4 1312 aaKnown RBP26.7■■□□□ 1.87
PTCD1-203ENST00000430029 PXDNQ92626 1479 aa26.7■■□□□ 1.87
PTCD1-203ENST00000430029 EDC4Q6P2E9 1401 aaKnown RBP26.7■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms