RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 SOX12O15370 315 aa15.78■□□□□ 0.12
CDH3-202ENST00000429102 RRAGDQ9NQL2 400 aaPredicted RBP15.78■□□□□ 0.12
CDH3-202ENST00000429102 TRIM27P14373 513 aa15.78■□□□□ 0.12
CDH3-202ENST00000429102 MVPQ14764 893 aaKnown RBP15.78■□□□□ 0.12
CDH3-202ENST00000429102 TMEM57Q8N5G2 664 aa15.78■□□□□ 0.12
CDH3-202ENST00000429102 GOLGA6L3A6NEY3 463 aa15.77■□□□□ 0.12
CDH3-202ENST00000429102 ANKRD45Q5TZF3 282 aa15.77■□□□□ 0.12
CDH3-202ENST00000429102 TBC1D32Q96NH3 1257 aa15.77■□□□□ 0.11
CDH3-202ENST00000429102 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.76■□□□□ 0.11
CDH3-202ENST00000429102 HSP90AB1P08238 724 aaKnown RBP15.76■□□□□ 0.11
CDH3-202ENST00000429102 HSCBQ8IWL3 235 aa15.76■□□□□ 0.11
CDH3-202ENST00000429102 ERCC6L2Q5T890 1561 aa15.76■□□□□ 0.11
CDH3-202ENST00000429102 E9PCH4 1651 aa15.75■□□□□ 0.11
CDH3-202ENST00000429102 CFAP65Q6ZU64 1925 aaKnown RBP15.75■□□□□ 0.11
CDH3-202ENST00000429102 NOS1P29475 1434 aa15.75■□□□□ 0.11
CDH3-202ENST00000429102 ZBTB7CA1YPR0 619 aa15.75■□□□□ 0.11
CDH3-202ENST00000429102 NCLP19338 710 aaKnown RBP15.75■□□□□ 0.11
CDH3-202ENST00000429102 STAG3Q9UJ98 1225 aa15.75■□□□□ 0.11
CDH3-202ENST00000429102 TRAK2O60296 914 aa15.74■□□□□ 0.11
CDH3-202ENST00000429102 RBM42Q9BTD8 480 aaKnown RBP15.74■□□□□ 0.11
CDH3-202ENST00000429102 CDC42BPBQ9Y5S2 1711 aa15.74■□□□□ 0.11
CDH3-202ENST00000429102 PIK3C2GO75747 1445 aa15.74■□□□□ 0.11
CDH3-202ENST00000429102 XRCC6P12956 609 aaKnown RBP eCLIP15.74■□□□□ 0.11
CDH3-202ENST00000429102 MCM4P33991 863 aa15.74■□□□□ 0.11
CDH3-202ENST00000429102 ARID3AQ99856 593 aa15.73■□□□□ 0.11
CDH3-202ENST00000429102 INSRP06213 1382 aa15.72■□□□□ 0.11
CDH3-202ENST00000429102 NUTM2FA1L443 756 aa15.72■□□□□ 0.11
CDH3-202ENST00000429102 FOXD4L5Q5VV16 416 aaPredicted RBP15.72■□□□□ 0.11
CDH3-202ENST00000429102 FOXD4L4Q8WXT5 416 aaPredicted RBP15.72■□□□□ 0.11
CDH3-202ENST00000429102 RAPGEF3O95398 923 aa15.72■□□□□ 0.11
CDH3-202ENST00000429102 TMPOP42166 694 aaKnown RBP15.72■□□□□ 0.11
CDH3-202ENST00000429102 ATP10AO60312 1499 aa15.71■□□□□ 0.11
CDH3-202ENST00000429102 PLPPR3Q6T4P5 718 aa15.71■□□□□ 0.11
CDH3-202ENST00000429102 PLCH2O75038 1416 aa15.71■□□□□ 0.1
CDH3-202ENST00000429102 ARHGEF5Q12774 1597 aa15.71■□□□□ 0.1
CDH3-202ENST00000429102 SLC24A1O60721 1099 aa15.7■□□□□ 0.1
CDH3-202ENST00000429102 ATF7IPQ6VMQ6 1270 aa15.7■□□□□ 0.1
CDH3-202ENST00000429102 WDR63Q8IWG1 891 aa15.7■□□□□ 0.1
CDH3-202ENST00000429102 DUOX2Q9NRD8 1548 aa15.7■□□□□ 0.1
CDH3-202ENST00000429102 L1TD1Q5T7N2 865 aaKnown RBP15.69■□□□□ 0.1
CDH3-202ENST00000429102 ANTXR1Q9H6X2 564 aa15.69■□□□□ 0.1
CDH3-202ENST00000429102 ERVK-7P63135 1459 aa15.69■□□□□ 0.1
CDH3-202ENST00000429102 DCTN1Q14203 1278 aa15.68■□□□□ 0.1
CDH3-202ENST00000429102 EVC2Q86UK5 1308 aa15.68■□□□□ 0.1
CDH3-202ENST00000429102 MLECQ14165 292 aa15.68■□□□□ 0.1
CDH3-202ENST00000429102 CHMP5Q9NZZ3 219 aa15.68■□□□□ 0.1
CDH3-202ENST00000429102 NPM1P06748 294 aaKnown RBP eCLIP15.68■□□□□ 0.1
CDH3-202ENST00000429102 PRKAR2BP31323 418 aa15.67■□□□□ 0.1
CDH3-202ENST00000429102 FAM43AQ8N2R8 423 aa15.67■□□□□ 0.1
CDH3-202ENST00000429102 PRAM1Q96QH2 718 aa15.67■□□□□ 0.1
CDH3-202ENST00000429102 DDX19BQ9UMR2 479 aa15.67■□□□□ 0.1
CDH3-202ENST00000429102 PNNQ9H307 717 aaKnown RBP15.67■□□□□ 0.1
CDH3-202ENST00000429102 CABP1Q9NZU7 370 aa15.67■□□□□ 0.1
CDH3-202ENST00000429102 FOXD4L6Q3SYB3 417 aaPredicted RBP15.66■□□□□ 0.1
CDH3-202ENST00000429102 FOXD4L3Q6VB84 417 aaPredicted RBP15.66■□□□□ 0.1
CDH3-202ENST00000429102 ATAD2Q6PL18 1390 aa15.66■□□□□ 0.1
CDH3-202ENST00000429102 PLEKHG5O94827 1062 aa15.66■□□□□ 0.1
CDH3-202ENST00000429102 TSPYL6Q8N831 410 aa15.66■□□□□ 0.1
CDH3-202ENST00000429102 DIAPH1O60610 1272 aaKnown RBP15.65■□□□□ 0.1
CDH3-202ENST00000429102 TRIM35Q9UPQ4 493 aa15.65■□□□□ 0.1
CDH3-202ENST00000429102 POLR3AO14802 1390 aaPredicted RBP15.65■□□□□ 0.1
CDH3-202ENST00000429102 MAST1Q9Y2H9 1570 aa15.65■□□□□ 0.1
CDH3-202ENST00000429102 NOL8Q76FK4 1167 aaKnown RBP15.64■□□□□ 0.1
CDH3-202ENST00000429102 TRIM44Q96DX7 344 aaPredicted RBP15.64■□□□□ 0.1
CDH3-202ENST00000429102 PREX2Q70Z35 1606 aa15.64■□□□□ 0.09
CDH3-202ENST00000429102 C14orf93Q9H972 538 aaKnown RBP15.64■□□□□ 0.09
CDH3-202ENST00000429102 EIF2AK4Q9P2K8 1649 aaKnown RBP15.64■□□□□ 0.09
CDH3-202ENST00000429102 MYO5CQ9NQX4 1742 aa15.63■□□□□ 0.09
CDH3-202ENST00000429102 FAM83GA6ND36 823 aa15.63■□□□□ 0.09
CDH3-202ENST00000429102 CD2BP2O95400 341 aaKnown RBP15.63■□□□□ 0.09
CDH3-202ENST00000429102 ZRANB1Q9UGI0 708 aa15.63■□□□□ 0.09
CDH3-202ENST00000429102 WAPLQ7Z5K2 1190 aa15.63■□□□□ 0.09
CDH3-202ENST00000429102 PTPRTO14522 1441 aa15.62■□□□□ 0.09
CDH3-202ENST00000429102 PHACTR3Q96KR7 559 aa15.62■□□□□ 0.09
CDH3-202ENST00000429102 FYB1O15117 783 aa15.62■□□□□ 0.09
CDH3-202ENST00000429102 TNPO1Q92973 898 aaKnown RBP15.62■□□□□ 0.09
CDH3-202ENST00000429102 IDI1Q13907 227 aa15.61■□□□□ 0.09
CDH3-202ENST00000429102 CHAMP1Q96JM3 812 aa15.61■□□□□ 0.09
CDH3-202ENST00000429102 IPO8O15397 1037 aaKnown RBP15.61■□□□□ 0.09
CDH3-202ENST00000429102 CHD1LQ86WJ1 897 aa15.61■□□□□ 0.09
CDH3-202ENST00000429102 C16orf71Q8IYS4 520 aaPredicted RBP15.61■□□□□ 0.09
CDH3-202ENST00000429102 KRT24Q2M2I5 525 aa15.6■□□□□ 0.09
CDH3-202ENST00000429102 RSPH6AQ9H0K4 717 aa15.6■□□□□ 0.09
CDH3-202ENST00000429102 NCKAP5LQ9HCH0 1330 aa15.6■□□□□ 0.09
CDH3-202ENST00000429102 RRS1Q15050 365 aaKnown RBP15.6■□□□□ 0.09
CDH3-202ENST00000429102 NGEFQ8N5V2 710 aa15.6■□□□□ 0.09
CDH3-202ENST00000429102 EMILIN1Q9Y6C2 1016 aa15.6■□□□□ 0.09
CDH3-202ENST00000429102 VSIG10Q8N0Z9 540 aa15.6■□□□□ 0.09
CDH3-202ENST00000429102 STAC3Q96MF2 364 aa15.6■□□□□ 0.09
CDH3-202ENST00000429102 VGFO15240 615 aaPredicted RBP15.59■□□□□ 0.09
CDH3-202ENST00000429102 FBXO31Q5XUX0 539 aaPredicted RBP15.59■□□□□ 0.09
CDH3-202ENST00000429102 SSFA2P28290 1259 aa15.59■□□□□ 0.09
CDH3-202ENST00000429102 FANCAO15360 1455 aa15.59■□□□□ 0.09
CDH3-202ENST00000429102 GRPEL1Q9HAV7 217 aa15.58■□□□□ 0.09
CDH3-202ENST00000429102 CLTCL1P53675 1640 aa15.58■□□□□ 0.09
CDH3-202ENST00000429102 NPC1L1Q9UHC9 1359 aa15.58■□□□□ 0.09
CDH3-202ENST00000429102 SMARCA5O60264 1052 aaPredicted RBP15.58■□□□□ 0.08
CDH3-202ENST00000429102 MADDQ8WXG6 1647 aa15.58■□□□□ 0.08
CDH3-202ENST00000429102 GAS2L3Q86XJ1 694 aa15.58■□□□□ 0.08
CDH3-202ENST00000429102 ZBTB40Q9NUA8 1239 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms