RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 ZMYM3Q14202 1370 aa17.55■□□□□ 0.4
USP42-203ENST00000426246 ERICH6BQ5W0A0 696 aa17.55■□□□□ 0.4
USP42-203ENST00000426246 MLECQ14165 292 aa17.55■□□□□ 0.4
USP42-203ENST00000426246 PER1O15534 1290 aaPredicted RBP17.54■□□□□ 0.4
USP42-203ENST00000426246 TMF1P82094 1093 aa17.54■□□□□ 0.4
USP42-203ENST00000426246 SETD1AO15047 1707 aaKnown RBP17.54■□□□□ 0.4
USP42-203ENST00000426246 QRICH2Q9H0J4 1663 aa17.54■□□□□ 0.4
USP42-203ENST00000426246 SPRYD3Q8NCJ5 442 aa17.54■□□□□ 0.4
USP42-203ENST00000426246 EIF3AQ14152 1382 aaKnown RBP17.53■□□□□ 0.4
USP42-203ENST00000426246 KDM5AP29375 1690 aaKnown RBP17.53■□□□□ 0.4
USP42-203ENST00000426246 RALBP1Q15311 655 aa17.53■□□□□ 0.4
USP42-203ENST00000426246 SBNO2Q9Y2G9 1366 aa17.53■□□□□ 0.4
USP42-203ENST00000426246 CLUAP1Q96AJ1 413 aa17.52■□□□□ 0.39
USP42-203ENST00000426246 DNAJC5Q9H3Z4 198 aa17.51■□□□□ 0.39
USP42-203ENST00000426246 VGFO15240 615 aaPredicted RBP17.51■□□□□ 0.39
USP42-203ENST00000426246 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.5■□□□□ 0.39
USP42-203ENST00000426246 NRXN3Q9Y4C0 1643 aa17.5■□□□□ 0.39
USP42-203ENST00000426246 APAF1O14727 1248 aa17.49■□□□□ 0.39
USP42-203ENST00000426246 C3P01024 1663 aa17.49■□□□□ 0.39
USP42-203ENST00000426246 UBR1Q8IWV7 1749 aa17.49■□□□□ 0.39
USP42-203ENST00000426246 IL27Q8NEV9 243 aa17.49■□□□□ 0.39
USP42-203ENST00000426246 ALKQ9UM73 1620 aa17.48■□□□□ 0.39
USP42-203ENST00000426246 FER1L4A9Z1Z3 1794 aa17.48■□□□□ 0.39
USP42-203ENST00000426246 TMEM132EQ6IEE7 984 aa17.47■□□□□ 0.39
USP42-203ENST00000426246 PTPRMP28827 1452 aa17.46■□□□□ 0.39
USP42-203ENST00000426246 EIF5BO60841 1220 aaKnown RBP17.46■□□□□ 0.39
USP42-203ENST00000426246 TRHP20396 242 aaPredicted RBP17.46■□□□□ 0.39
USP42-203ENST00000426246 PARD3Q8TEW0 1356 aa17.46■□□□□ 0.39
USP42-203ENST00000426246 SMG6Q86US8 1419 aaKnown RBP17.46■□□□□ 0.39
USP42-203ENST00000426246 BCAR3O75815 825 aa17.43■□□□□ 0.38
USP42-203ENST00000426246 SLKQ9H2G2 1235 aaPredicted RBP17.43■□□□□ 0.38
USP42-203ENST00000426246 RIMS2Q9UQ26 1411 aa17.43■□□□□ 0.38
USP42-203ENST00000426246 PPM1GO15355 546 aaPredicted RBP17.43■□□□□ 0.38
USP42-203ENST00000426246 TRAK1Q9UPV9 953 aa17.43■□□□□ 0.38
USP42-203ENST00000426246 TULP4Q9NRJ4 1543 aa17.43■□□□□ 0.38
USP42-203ENST00000426246 CENPJQ9HC77 1338 aaPredicted RBP17.42■□□□□ 0.38
USP42-203ENST00000426246 TNRQ92752 1358 aa17.42■□□□□ 0.38
USP42-203ENST00000426246 TCERG1O14776 1098 aaKnown RBP17.41■□□□□ 0.38
USP42-203ENST00000426246 STK26Q9P289 416 aa17.4■□□□□ 0.38
USP42-203ENST00000426246 COG6Q9Y2V7 657 aa17.4■□□□□ 0.38
USP42-203ENST00000426246 PLPPR3Q6T4P5 718 aa17.4■□□□□ 0.38
USP42-203ENST00000426246 CDCA8Q53HL2 280 aa17.39■□□□□ 0.37
USP42-203ENST00000426246 YTHDC2Q9H6S0 1430 aaKnown RBP17.39■□□□□ 0.37
USP42-203ENST00000426246 GOLGA2Q08379 1002 aa17.39■□□□□ 0.37
USP42-203ENST00000426246 SLC24A1O60721 1099 aa17.37■□□□□ 0.37
USP42-203ENST00000426246 PANK1Q8TE04 598 aa17.37■□□□□ 0.37
USP42-203ENST00000426246 NLRP1Q9C000 1473 aa17.37■□□□□ 0.37
USP42-203ENST00000426246 ESF1Q9H501 851 aaKnown RBP17.37■□□□□ 0.37
USP42-203ENST00000426246 AMER1Q5JTC6 1135 aaPredicted RBP17.36■□□□□ 0.37
USP42-203ENST00000426246 DLC1Q96QB1 1528 aa17.36■□□□□ 0.37
USP42-203ENST00000426246 U2SURPO15042 1029 aaKnown RBP17.35■□□□□ 0.37
USP42-203ENST00000426246 BRD4O60885 1362 aaPredicted RBP17.35■□□□□ 0.37
USP42-203ENST00000426246 PPP2R1AP30153 589 aa17.35■□□□□ 0.37
USP42-203ENST00000426246 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.35■□□□□ 0.37
USP42-203ENST00000426246 BACH2Q9BYV9 841 aa17.35■□□□□ 0.37
USP42-203ENST00000426246 CEBPAP49715 358 aaPredicted RBP17.34■□□□□ 0.37
USP42-203ENST00000426246 TMEM2Q9UHN6 1383 aa17.34■□□□□ 0.37
USP42-203ENST00000426246 KNDC1Q76NI1 1749 aa17.34■□□□□ 0.37
USP42-203ENST00000426246 STAG3Q9UJ98 1225 aa17.34■□□□□ 0.37
USP42-203ENST00000426246 LRPPRCP42704 1394 aaKnown RBP17.33■□□□□ 0.37
USP42-203ENST00000426246 NPC1L1Q9UHC9 1359 aa17.33■□□□□ 0.37
USP42-203ENST00000426246 ADAMTSL3P82987 1691 aa17.32■□□□□ 0.36
USP42-203ENST00000426246 CARD14Q9BXL6 1004 aa17.32■□□□□ 0.36
USP42-203ENST00000426246 SPINK5Q9NQ38 1064 aaPredicted RBP17.32■□□□□ 0.36
USP42-203ENST00000426246 SLIT1O75093 1534 aa17.32■□□□□ 0.36
USP42-203ENST00000426246 BRPF3Q9ULD4 1205 aa17.32■□□□□ 0.36
USP42-203ENST00000426246 USP32Q8NFA0 1604 aa17.31■□□□□ 0.36
USP42-203ENST00000426246 ANO8Q9HCE9 1232 aaPredicted RBP17.31■□□□□ 0.36
USP42-203ENST00000426246 ARHGAP23Q9P227 1491 aa17.31■□□□□ 0.36
USP42-203ENST00000426246 MORC1Q86VD1 984 aa17.31■□□□□ 0.36
USP42-203ENST00000426246 PUS7Q96PZ0 661 aaKnown RBP17.3■□□□□ 0.36
USP42-203ENST00000426246 METP08581 1390 aa17.3■□□□□ 0.36
USP42-203ENST00000426246 RIMS1Q86UR5 1692 aaKnown RBP17.3■□□□□ 0.36
USP42-203ENST00000426246 ADAMTS13Q76LX8 1427 aa17.29■□□□□ 0.36
USP42-203ENST00000426246 MED14O60244 1454 aa17.28■□□□□ 0.36
USP42-203ENST00000426246 PDE3BQ13370 1112 aa17.28■□□□□ 0.36
USP42-203ENST00000426246 GZF1Q9H116 711 aaPredicted RBP17.28■□□□□ 0.36
USP42-203ENST00000426246 DMRT2Q9Y5R5 561 aa17.28■□□□□ 0.36
USP42-203ENST00000426246 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.28■□□□□ 0.36
USP42-203ENST00000426246 ABCC11Q96J66 1382 aa17.28■□□□□ 0.36
USP42-203ENST00000426246 TECPR2O15040 1411 aa17.27■□□□□ 0.36
USP42-203ENST00000426246 SLC12A5Q9H2X9 1139 aa17.27■□□□□ 0.36
USP42-203ENST00000426246 CPS1P31327 1500 aa17.27■□□□□ 0.36
USP42-203ENST00000426246 U2AF1L5P0DN76 240 aaPredicted RBP17.27■□□□□ 0.36
USP42-203ENST00000426246 U2AF1Q01081 240 aaKnown RBP eCLIP17.27■□□□□ 0.36
USP42-203ENST00000426246 PRAM1Q96QH2 718 aa17.27■□□□□ 0.35
USP42-203ENST00000426246 TNNQ9UQP3 1299 aa17.27■□□□□ 0.35
USP42-203ENST00000426246 PLEKHG5O94827 1062 aa17.26■□□□□ 0.35
USP42-203ENST00000426246 LTKP29376 864 aa17.26■□□□□ 0.35
USP42-203ENST00000426246 FRAT2O75474 233 aaPredicted RBP17.26■□□□□ 0.35
USP42-203ENST00000426246 PLEKHH1Q9ULM0 1364 aa17.25■□□□□ 0.35
USP42-203ENST00000426246 EVC2Q86UK5 1308 aa17.25■□□□□ 0.35
USP42-203ENST00000426246 CD163L1Q9NR16 1453 aa17.25■□□□□ 0.35
USP42-203ENST00000426246 PLEKHG1Q9ULL1 1385 aa17.24■□□□□ 0.35
USP42-203ENST00000426246 NFKBIBQ15653 356 aa17.24■□□□□ 0.35
USP42-203ENST00000426246 DDRGK1Q96HY6 314 aa17.23■□□□□ 0.35
USP42-203ENST00000426246 ZNF142P52746 1687 aaPredicted RBP17.23■□□□□ 0.35
USP42-203ENST00000426246 CEP170BQ9Y4F5 1589 aaPredicted RBP17.23■□□□□ 0.35
USP42-203ENST00000426246 ELL2O00472 640 aaPredicted RBP17.22■□□□□ 0.35
USP42-203ENST00000426246 SOX12O15370 315 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms