RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MINK1Q8N4C8 1332 aaPredicted RBP14.03□□□□□ -0.16
CD44-207ENST00000425428 POLR3GLQ9BT43 218 aa14.03□□□□□ -0.16
CD44-207ENST00000425428 SBNO2Q9Y2G9 1366 aa14.03□□□□□ -0.16
CD44-207ENST00000425428 ROBO2Q9HCK4 1378 aa14.02□□□□□ -0.16
CD44-207ENST00000425428 SRPK2P78362 688 aaKnown RBP14.01□□□□□ -0.17
CD44-207ENST00000425428 NCOA3Q9Y6Q9 1424 aa14.01□□□□□ -0.17
CD44-207ENST00000425428 ZNF335Q9H4Z2 1342 aaPredicted RBP14.01□□□□□ -0.17
CD44-207ENST00000425428 ATF3P18847 181 aa13.99□□□□□ -0.17
CD44-207ENST00000425428 MSH6P52701 1360 aa13.99□□□□□ -0.17
CD44-207ENST00000425428 C19orf44Q9H6X5 657 aa13.98□□□□□ -0.17
CD44-207ENST00000425428 PLEKHH1Q9ULM0 1364 aa13.97□□□□□ -0.17
CD44-207ENST00000425428 STRCP1A6NGW2 1772 aa13.97□□□□□ -0.17
CD44-207ENST00000425428 WASLO00401 505 aaPredicted RBP13.97□□□□□ -0.17
CD44-207ENST00000425428 PUS7Q96PZ0 661 aaKnown RBP13.97□□□□□ -0.17
CD44-207ENST00000425428 TESK2Q96S53 571 aa13.97□□□□□ -0.17
CD44-207ENST00000425428 TMEM94Q12767 1356 aa13.97□□□□□ -0.17
CD44-207ENST00000425428 CDK19Q9BWU1 502 aa13.96□□□□□ -0.17
CD44-207ENST00000425428 ATAD2Q6PL18 1390 aa13.96□□□□□ -0.17
CD44-207ENST00000425428 ADGRL3Q9HAR2 1447 aa13.96□□□□□ -0.17
CD44-207ENST00000425428 CADPS2Q86UW7 1296 aa13.96□□□□□ -0.18
CD44-207ENST00000425428 ADGRB2O60241 1585 aa13.95□□□□□ -0.18
CD44-207ENST00000425428 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.95□□□□□ -0.18
CD44-207ENST00000425428 TMC1Q8TDI8 760 aa13.94□□□□□ -0.18
CD44-207ENST00000425428 NALCNQ8IZF0 1738 aa13.94□□□□□ -0.18
CD44-207ENST00000425428 RBM33Q96EV2 1170 aaKnown RBP13.94□□□□□ -0.18
CD44-207ENST00000425428 LRRC7Q96NW7 1537 aa13.93□□□□□ -0.18
CD44-207ENST00000425428 CABP2Q9NPB3 220 aa13.93□□□□□ -0.18
CD44-207ENST00000425428 NINLQ9Y2I6 1382 aa13.93□□□□□ -0.18
CD44-207ENST00000425428 DCCP43146 1447 aa13.93□□□□□ -0.18
CD44-207ENST00000425428 CDC42BPGQ6DT37 1551 aa13.93□□□□□ -0.18
CD44-207ENST00000425428 ITSN1Q15811 1721 aa13.93□□□□□ -0.18
CD44-207ENST00000425428 CCDC7Q96M83 1385 aa13.92□□□□□ -0.18
CD44-207ENST00000425428 DISP3Q9P2K9 1392 aa13.92□□□□□ -0.18
CD44-207ENST00000425428 KIF7Q2M1P5 1343 aa13.91□□□□□ -0.18
CD44-207ENST00000425428 CCDC61Q9Y6R9 512 aa13.91□□□□□ -0.18
CD44-207ENST00000425428 NUDT16Q96DE0 195 aaKnown RBP13.91□□□□□ -0.18
CD44-207ENST00000425428 TERF2IPQ9NYB0 399 aa13.91□□□□□ -0.18
CD44-207ENST00000425428 TULP4Q9NRJ4 1543 aa13.9□□□□□ -0.18
CD44-207ENST00000425428 ANKARQ7Z5J8 1434 aa13.9□□□□□ -0.18
CD44-207ENST00000425428 FMN2Q9NZ56 1722 aa13.9□□□□□ -0.18
CD44-207ENST00000425428 HDGFL2Q7Z4V5 671 aaPredicted RBP13.9□□□□□ -0.18
CD44-207ENST00000425428 WASHC2AQ641Q2 1341 aa13.89□□□□□ -0.19
CD44-207ENST00000425428 NUTM2FA1L443 756 aa13.89□□□□□ -0.19
CD44-207ENST00000425428 XIRP1Q702N8 1843 aaKnown RBP13.89□□□□□ -0.19
CD44-207ENST00000425428 LTBP4Q8N2S1 1624 aa13.88□□□□□ -0.19
CD44-207ENST00000425428 TOM1O60784 492 aa13.88□□□□□ -0.19
CD44-207ENST00000425428 ESCO1Q5FWF5 840 aa13.87□□□□□ -0.19
CD44-207ENST00000425428 NGDNQ8NEJ9 315 aaKnown RBP13.87□□□□□ -0.19
CD44-207ENST00000425428 C11orf95C9JLR9 678 aaPredicted RBP13.86□□□□□ -0.19
CD44-207ENST00000425428 DDX10Q13206 875 aaKnown RBP13.86□□□□□ -0.19
CD44-207ENST00000425428 ZNF692Q9BU19 519 aaPredicted RBP13.86□□□□□ -0.19
CD44-207ENST00000425428 PPIP5K1Q6PFW1 1433 aa13.86□□□□□ -0.19
CD44-207ENST00000425428 RGPD8O14715 1765 aaPredicted RBP13.86□□□□□ -0.19
CD44-207ENST00000425428 IQSEC2Q5JU85 1478 aa13.85□□□□□ -0.19
CD44-207ENST00000425428 CABP1Q9NZU7 370 aa13.85□□□□□ -0.19
CD44-207ENST00000425428 SLAIN2Q9P270 581 aa13.84□□□□□ -0.19
CD44-207ENST00000425428 PHF8Q9UPP1 1060 aa13.84□□□□□ -0.19
CD44-207ENST00000425428 KNSTRNQ9Y448 316 aa13.84□□□□□ -0.19
CD44-207ENST00000425428 CERKQ8TCT0 537 aa13.83□□□□□ -0.19
CD44-207ENST00000425428 ATP7BP35670 1465 aa13.83□□□□□ -0.19
CD44-207ENST00000425428 KIF1AQ12756 1690 aa13.83□□□□□ -0.2
CD44-207ENST00000425428 PSME1Q06323 249 aa13.83□□□□□ -0.2
CD44-207ENST00000425428 SLC12A5Q9H2X9 1139 aa13.83□□□□□ -0.2
CD44-207ENST00000425428 PANK3Q9H999 370 aa13.83□□□□□ -0.2
CD44-207ENST00000425428 PLEKHG3A1L390 1219 aa13.82□□□□□ -0.2
CD44-207ENST00000425428 PMFBP1Q8TBY8 1022 aa13.82□□□□□ -0.2
CD44-207ENST00000425428 C1orf167Q5SNV9 1468 aa13.82□□□□□ -0.2
CD44-207ENST00000425428 ANKRD36BQ8N2N9 1353 aa13.81□□□□□ -0.2
CD44-207ENST00000425428 TOPAZ1Q8N9V7 1692 aa13.81□□□□□ -0.2
CD44-207ENST00000425428 SCAF1Q9H7N4 1312 aaKnown RBP13.81□□□□□ -0.2
CD44-207ENST00000425428 KTN1Q86UP2 1357 aaKnown RBP13.81□□□□□ -0.2
CD44-207ENST00000425428 UBAP1LF5GYI3 381 aa13.81□□□□□ -0.2
CD44-207ENST00000425428 MST1RQ04912 1400 aa13.81□□□□□ -0.2
CD44-207ENST00000425428 PRR36Q9H6K5 1346 aa13.8□□□□□ -0.2
CD44-207ENST00000425428 MYOM1P52179 1685 aa13.8□□□□□ -0.2
CD44-207ENST00000425428 USP32Q8NFA0 1604 aa13.8□□□□□ -0.2
CD44-207ENST00000425428 ACEP12821 1306 aa13.8□□□□□ -0.2
CD44-207ENST00000425428 NPHP3Q7Z494 1330 aa13.79□□□□□ -0.2
CD44-207ENST00000425428 BRD4O60885 1362 aaPredicted RBP13.79□□□□□ -0.2
CD44-207ENST00000425428 CGNL1Q0VF96 1302 aa13.78□□□□□ -0.2
CD44-207ENST00000425428 DIEXFQ68CQ4 756 aaKnown RBP13.78□□□□□ -0.2
CD44-207ENST00000425428 ORAI2Q96SN7 254 aa13.78□□□□□ -0.2
CD44-207ENST00000425428 AKAP12Q02952 1782 aa13.78□□□□□ -0.2
CD44-207ENST00000425428 PAK3O75914 559 aaPredicted RBP13.77□□□□□ -0.21
CD44-207ENST00000425428 ANP32CO43423 234 aa13.76□□□□□ -0.21
CD44-207ENST00000425428 FOXO3O43524 673 aa13.76□□□□□ -0.21
CD44-207ENST00000425428 PIP4K2BP78356 416 aa13.76□□□□□ -0.21
CD44-207ENST00000425428 A0A1W2PP64 1363 aa13.76□□□□□ -0.21
CD44-207ENST00000425428 POLR3AO14802 1390 aaPredicted RBP13.76□□□□□ -0.21
CD44-207ENST00000425428 EDC4Q6P2E9 1401 aaKnown RBP13.75□□□□□ -0.21
CD44-207ENST00000425428 BRINP3Q76B58 766 aa13.75□□□□□ -0.21
CD44-207ENST00000425428 TTC21AQ8NDW8 1320 aa13.75□□□□□ -0.21
CD44-207ENST00000425428 NSD3Q9BZ95 1437 aa13.75□□□□□ -0.21
CD44-207ENST00000425428 MON2Q7Z3U7 1717 aa13.75□□□□□ -0.21
CD44-207ENST00000425428 KRT28Q7Z3Y7 464 aa13.74□□□□□ -0.21
CD44-207ENST00000425428 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.74□□□□□ -0.21
CD44-207ENST00000425428 CPSF1Q10570 1443 aaKnown RBP13.74□□□□□ -0.21
CD44-207ENST00000425428 USP6P35125 1406 aa13.73□□□□□ -0.21
CD44-207ENST00000425428 LMOD2Q6P5Q4 547 aa13.73□□□□□ -0.21
CD44-207ENST00000425428 NSD2O96028 1365 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms