RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 CDC42BPGQ6DT37 1551 aa17.94■□□□□ 0.46
SKA1-203ENST00000417656 PIP4K2BP78356 416 aa17.93■□□□□ 0.46
SKA1-203ENST00000417656 ROBO1Q9Y6N7 1651 aa17.93■□□□□ 0.46
SKA1-203ENST00000417656 WAPLQ7Z5K2 1190 aa17.92■□□□□ 0.46
SKA1-203ENST00000417656 NBPF1Q3BBV0 1214 aa17.91■□□□□ 0.46
SKA1-203ENST00000417656 NBPF8Q3BBV2 869 aa17.91■□□□□ 0.46
SKA1-203ENST00000417656 C19orf44Q9H6X5 657 aa17.91■□□□□ 0.46
SKA1-203ENST00000417656 TRAK1Q9UPV9 953 aa17.91■□□□□ 0.46
SKA1-203ENST00000417656 RALGAPBQ86X10 1494 aa17.9■□□□□ 0.46
SKA1-203ENST00000417656 ADGRB2O60241 1585 aa17.9■□□□□ 0.46
SKA1-203ENST00000417656 MST1RQ04912 1400 aa17.89■□□□□ 0.46
SKA1-203ENST00000417656 ATF3P18847 181 aa17.89■□□□□ 0.45
SKA1-203ENST00000417656 PRAM1Q96QH2 718 aa17.89■□□□□ 0.45
SKA1-203ENST00000417656 ROCK2O75116 1388 aaKnown RBP17.89■□□□□ 0.45
SKA1-203ENST00000417656 FMN2Q9NZ56 1722 aa17.89■□□□□ 0.45
SKA1-203ENST00000417656 CADPS2Q86UW7 1296 aa17.88■□□□□ 0.45
SKA1-203ENST00000417656 SAFB2Q14151 953 aaKnown RBP eCLIP17.87■□□□□ 0.45
SKA1-203ENST00000417656 SIRT1Q96EB6 747 aa17.87■□□□□ 0.45
SKA1-203ENST00000417656 QRICH2Q9H0J4 1663 aa17.87■□□□□ 0.45
SKA1-203ENST00000417656 GPRASP1Q5JY77 1395 aa17.85■□□□□ 0.45
SKA1-203ENST00000417656 POGKQ9P215 609 aa17.85■□□□□ 0.45
SKA1-203ENST00000417656 HOXD11P31277 338 aaPredicted RBP17.84■□□□□ 0.45
SKA1-203ENST00000417656 SLAIN2Q9P270 581 aa17.84■□□□□ 0.45
SKA1-203ENST00000417656 C1orf167Q5SNV9 1468 aa17.83■□□□□ 0.45
SKA1-203ENST00000417656 PHLPP1O60346 1717 aa17.81■□□□□ 0.44
SKA1-203ENST00000417656 MINK1Q8N4C8 1332 aaPredicted RBP17.81■□□□□ 0.44
SKA1-203ENST00000417656 NHSL1Q5SYE7 1610 aa17.81■□□□□ 0.44
SKA1-203ENST00000417656 USP32Q8NFA0 1604 aa17.81■□□□□ 0.44
SKA1-203ENST00000417656 TIMELESSQ9UNS1 1208 aa17.81■□□□□ 0.44
SKA1-203ENST00000417656 AHDC1Q5TGY3 1603 aaPredicted RBP17.8■□□□□ 0.44
SKA1-203ENST00000417656 HSPA1LP34931 641 aa17.8■□□□□ 0.44
SKA1-203ENST00000417656 RGPD8O14715 1765 aaPredicted RBP17.79■□□□□ 0.44
SKA1-203ENST00000417656 CACNB1Q02641 598 aaPredicted RBP17.79■□□□□ 0.44
SKA1-203ENST00000417656 HIRIP3Q9BW71 556 aaPredicted RBP17.79■□□□□ 0.44
SKA1-203ENST00000417656 COL16A1Q07092 1604 aaPredicted RBP17.79■□□□□ 0.44
SKA1-203ENST00000417656 CENPJQ9HC77 1338 aaPredicted RBP17.78■□□□□ 0.44
SKA1-203ENST00000417656 BRINP3Q76B58 766 aa17.78■□□□□ 0.44
SKA1-203ENST00000417656 EIF3AQ14152 1382 aaKnown RBP17.78■□□□□ 0.44
SKA1-203ENST00000417656 TULP4Q9NRJ4 1543 aa17.77■□□□□ 0.44
SKA1-203ENST00000417656 NUTM2FA1L443 756 aa17.77■□□□□ 0.44
SKA1-203ENST00000417656 CARD11Q9BXL7 1154 aa17.77■□□□□ 0.44
SKA1-203ENST00000417656 KIF1AQ12756 1690 aa17.77■□□□□ 0.43
SKA1-203ENST00000417656 DCAF8L1A6NGE4 600 aa17.76■□□□□ 0.43
SKA1-203ENST00000417656 ANKARQ7Z5J8 1434 aa17.74■□□□□ 0.43
SKA1-203ENST00000417656 ORAI2Q96SN7 254 aa17.74■□□□□ 0.43
SKA1-203ENST00000417656 ITSN1Q15811 1721 aa17.74■□□□□ 0.43
SKA1-203ENST00000417656 TOPAZ1Q8N9V7 1692 aa17.74■□□□□ 0.43
SKA1-203ENST00000417656 ATP7BP35670 1465 aa17.73■□□□□ 0.43
SKA1-203ENST00000417656 WASLO00401 505 aaPredicted RBP17.72■□□□□ 0.43
SKA1-203ENST00000417656 CNKSR2Q8WXI2 1034 aa17.72■□□□□ 0.43
SKA1-203ENST00000417656 ESCO1Q5FWF5 840 aa17.71■□□□□ 0.43
SKA1-203ENST00000417656 PRR36Q9H6K5 1346 aa17.71■□□□□ 0.42
SKA1-203ENST00000417656 DDX17Q92841 729 aaKnown RBP17.7■□□□□ 0.42
SKA1-203ENST00000417656 USP47Q96K76 1375 aa17.68■□□□□ 0.42
SKA1-203ENST00000417656 PXDNQ92626 1479 aa17.68■□□□□ 0.42
SKA1-203ENST00000417656 SHPRHQ149N8 1683 aa17.67■□□□□ 0.42
SKA1-203ENST00000417656 SBNO2Q9Y2G9 1366 aa17.67■□□□□ 0.42
SKA1-203ENST00000417656 CDK19Q9BWU1 502 aa17.67■□□□□ 0.42
SKA1-203ENST00000417656 PHF8Q9UPP1 1060 aa17.65■□□□□ 0.42
SKA1-203ENST00000417656 SRPK2P78362 688 aaKnown RBP17.64■□□□□ 0.41
SKA1-203ENST00000417656 NPHP3Q7Z494 1330 aa17.64■□□□□ 0.41
SKA1-203ENST00000417656 MED1Q15648 1581 aaPredicted RBP17.63■□□□□ 0.41
SKA1-203ENST00000417656 FOXO3O43524 673 aa17.63■□□□□ 0.41
SKA1-203ENST00000417656 XPCQ01831 940 aaPredicted RBP17.63■□□□□ 0.41
SKA1-203ENST00000417656 NUDT16Q96DE0 195 aaKnown RBP17.63■□□□□ 0.41
SKA1-203ENST00000417656 CABP2Q9NPB3 220 aa17.63■□□□□ 0.41
SKA1-203ENST00000417656 RNF216Q9NWF9 866 aaPredicted RBP17.63■□□□□ 0.41
SKA1-203ENST00000417656 EVC2Q86UK5 1308 aa17.63■□□□□ 0.41
SKA1-203ENST00000417656 JCADQ9P266 1359 aa17.63■□□□□ 0.41
SKA1-203ENST00000417656 TRPM3Q9HCF6 1732 aaPredicted RBP17.62■□□□□ 0.41
SKA1-203ENST00000417656 ST20-MTHFSA0A0A6YYL1 179 aa17.62■□□□□ 0.41
SKA1-203ENST00000417656 PMFBP1Q8TBY8 1022 aa17.62■□□□□ 0.41
SKA1-203ENST00000417656 SOS2Q07890 1332 aaPredicted RBP17.62■□□□□ 0.41
SKA1-203ENST00000417656 PPIP5K1Q6PFW1 1433 aa17.61■□□□□ 0.41
SKA1-203ENST00000417656 COL22A1Q8NFW1 1626 aaPredicted RBP17.59■□□□□ 0.41
SKA1-203ENST00000417656 PNPLA6Q8IY17 1366 aa17.59■□□□□ 0.41
SKA1-203ENST00000417656 TESK2Q96S53 571 aa17.59■□□□□ 0.41
SKA1-203ENST00000417656 ATAD2Q6PL18 1390 aa17.57■□□□□ 0.4
SKA1-203ENST00000417656 RNF39Q9H2S5 420 aa17.57■□□□□ 0.4
SKA1-203ENST00000417656 CCDC61Q9Y6R9 512 aa17.57■□□□□ 0.4
SKA1-203ENST00000417656 LRP6O75581 1613 aa17.57■□□□□ 0.4
SKA1-203ENST00000417656 TNS3Q68CZ2 1445 aa17.56■□□□□ 0.4
SKA1-203ENST00000417656 AKAP12Q02952 1782 aa17.56■□□□□ 0.4
SKA1-203ENST00000417656 POLR3AO14802 1390 aaPredicted RBP17.56■□□□□ 0.4
SKA1-203ENST00000417656 DISP3Q9P2K9 1392 aa17.56■□□□□ 0.4
SKA1-203ENST00000417656 ALS2Q96Q42 1657 aa17.56■□□□□ 0.4
SKA1-203ENST00000417656 KRT28Q7Z3Y7 464 aa17.56■□□□□ 0.4
SKA1-203ENST00000417656 LRRC59Q96AG4 307 aaKnown RBP17.56■□□□□ 0.4
SKA1-203ENST00000417656 NGDNQ8NEJ9 315 aaKnown RBP17.55■□□□□ 0.4
SKA1-203ENST00000417656 ABCA3Q99758 1704 aa17.55■□□□□ 0.4
SKA1-203ENST00000417656 ACEP12821 1306 aa17.54■□□□□ 0.4
SKA1-203ENST00000417656 SBNO1A3KN83 1393 aa17.53■□□□□ 0.4
SKA1-203ENST00000417656 PLEKHG3A1L390 1219 aa17.53■□□□□ 0.4
SKA1-203ENST00000417656 PSME1Q06323 249 aa17.53■□□□□ 0.4
SKA1-203ENST00000417656 NRKQ7Z2Y5 1582 aa17.53■□□□□ 0.4
SKA1-203ENST00000417656 MON2Q7Z3U7 1717 aa17.52■□□□□ 0.4
SKA1-203ENST00000417656 SPATA31A6Q5VVP1 1343 aa17.52■□□□□ 0.4
SKA1-203ENST00000417656 SPATA31A3Q5VYP0 1347 aa17.52■□□□□ 0.4
SKA1-203ENST00000417656 HSPA5P11021 654 aaKnown RBP17.52■□□□□ 0.4
SKA1-203ENST00000417656 EIF4G2P78344 907 aaKnown RBP eCLIP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms