RNA–Protein interactions for RNA: ENST00000414057.6

SCAMP4-204, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 1 (best)

Gene SCAMP4, Length 1,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-204ENST00000414057 C14orf93Q9H972 538 aaKnown RBP24.58■■□□□ 1.53
SCAMP4-204ENST00000414057 MYOM2P54296 1465 aa24.57■■□□□ 1.52
SCAMP4-204ENST00000414057 DHX57Q6P158 1386 aaKnown RBP24.57■■□□□ 1.52
SCAMP4-204ENST00000414057 LRP6O75581 1613 aa24.57■■□□□ 1.52
SCAMP4-204ENST00000414057 NUTM2BA6NNL0 878 aaPredicted RBP24.56■■□□□ 1.52
SCAMP4-204ENST00000414057 NUTM2EB1AL46 878 aaPredicted RBP24.56■■□□□ 1.52
SCAMP4-204ENST00000414057 NUTM2AQ8IVF1 878 aaPredicted RBP24.56■■□□□ 1.52
SCAMP4-204ENST00000414057 SIRT1Q96EB6 747 aa24.56■■□□□ 1.52
SCAMP4-204ENST00000414057 ORAI2Q96SN7 254 aa24.56■■□□□ 1.52
SCAMP4-204ENST00000414057 WAPLQ7Z5K2 1190 aa24.55■■□□□ 1.52
SCAMP4-204ENST00000414057 DDX17Q92841 729 aaKnown RBP24.55■■□□□ 1.52
SCAMP4-204ENST00000414057 YTHDC2Q9H6S0 1430 aaKnown RBP24.55■■□□□ 1.52
SCAMP4-204ENST00000414057 CDC42BPGQ6DT37 1551 aa24.54■■□□□ 1.52
SCAMP4-204ENST00000414057 NRXN1Q9ULB1 1477 aa24.54■■□□□ 1.52
SCAMP4-204ENST00000414057 STAC3Q96MF2 364 aa24.53■■□□□ 1.52
SCAMP4-204ENST00000414057 ESCO1Q5FWF5 840 aa24.52■■□□□ 1.52
SCAMP4-204ENST00000414057 SOS2Q07890 1332 aaPredicted RBP24.52■■□□□ 1.52
SCAMP4-204ENST00000414057 CFAP70Q5T0N1 1121 aa24.51■■□□□ 1.51
SCAMP4-204ENST00000414057 NPHP3Q7Z494 1330 aa24.5■■□□□ 1.51
SCAMP4-204ENST00000414057 LAMC1P11047 1609 aa24.5■■□□□ 1.51
SCAMP4-204ENST00000414057 PNPLA6Q8IY17 1366 aa24.5■■□□□ 1.51
SCAMP4-204ENST00000414057 KNDC1Q76NI1 1749 aa24.5■■□□□ 1.51
SCAMP4-204ENST00000414057 PLEKHH1Q9ULM0 1364 aa24.47■■□□□ 1.51
SCAMP4-204ENST00000414057 DCAF11Q8TEB1 546 aa24.45■■□□□ 1.51
SCAMP4-204ENST00000414057 NUTM2FA1L443 756 aa24.44■■□□□ 1.5
SCAMP4-204ENST00000414057 KDM2AQ9Y2K7 1162 aa24.44■■□□□ 1.5
SCAMP4-204ENST00000414057 AFF2P51816 1311 aa24.42■■□□□ 1.5
SCAMP4-204ENST00000414057 FOXO3O43524 673 aa24.42■■□□□ 1.5
SCAMP4-204ENST00000414057 C8orf37Q96NL8 207 aa24.42■■□□□ 1.5
SCAMP4-204ENST00000414057 PRAM1Q96QH2 718 aa24.42■■□□□ 1.5
SCAMP4-204ENST00000414057 POGKQ9P215 609 aa24.42■■□□□ 1.5
SCAMP4-204ENST00000414057 RXRBP28702 533 aa24.41■■□□□ 1.5
SCAMP4-204ENST00000414057 ADAMTS2O95450 1211 aa24.38■■□□□ 1.49
SCAMP4-204ENST00000414057 NGLY1Q96IV0 654 aa24.38■■□□□ 1.49
SCAMP4-204ENST00000414057 DLC1Q96QB1 1528 aa24.38■■□□□ 1.49
SCAMP4-204ENST00000414057 SAFB2Q14151 953 aaKnown RBP eCLIP24.37■■□□□ 1.49
SCAMP4-204ENST00000414057 PXDNQ92626 1479 aa24.36■■□□□ 1.49
SCAMP4-204ENST00000414057 FMN2Q9NZ56 1722 aa24.36■■□□□ 1.49
SCAMP4-204ENST00000414057 TRAK1Q9UPV9 953 aa24.35■■□□□ 1.49
SCAMP4-204ENST00000414057 XPCQ01831 940 aaPredicted RBP24.34■■□□□ 1.49
SCAMP4-204ENST00000414057 ADGRB1O14514 1584 aa24.34■■□□□ 1.49
SCAMP4-204ENST00000414057 QTRT2Q9H974 415 aaKnown RBP24.33■■□□□ 1.49
SCAMP4-204ENST00000414057 KIF1AQ12756 1690 aa24.33■■□□□ 1.48
SCAMP4-204ENST00000414057 PSME1Q06323 249 aa24.32■■□□□ 1.48
SCAMP4-204ENST00000414057 PHF8Q9UPP1 1060 aa24.32■■□□□ 1.48
SCAMP4-204ENST00000414057 KRT28Q7Z3Y7 464 aa24.32■■□□□ 1.48
SCAMP4-204ENST00000414057 COL22A1Q8NFW1 1626 aaPredicted RBP24.31■■□□□ 1.48
SCAMP4-204ENST00000414057 CDK12Q9NYV4 1490 aaPredicted RBP24.31■■□□□ 1.48
SCAMP4-204ENST00000414057 EIF3AQ14152 1382 aaKnown RBP24.31■■□□□ 1.48
SCAMP4-204ENST00000414057 RBM6P78332 1123 aaKnown RBP24.31■■□□□ 1.48
SCAMP4-204ENST00000414057 USP21Q9UK80 565 aa24.29■■□□□ 1.48
SCAMP4-204ENST00000414057 SPATA31A3Q5VYP0 1347 aa24.29■■□□□ 1.48
SCAMP4-204ENST00000414057 ANKARQ7Z5J8 1434 aa24.29■■□□□ 1.48
SCAMP4-204ENST00000414057 FNBP4Q8N3X1 1017 aaPredicted RBP24.28■■□□□ 1.48
SCAMP4-204ENST00000414057 TRPC5Q9UL62 973 aaPredicted RBP24.26■■□□□ 1.47
SCAMP4-204ENST00000414057 ADGRB2O60241 1585 aa24.25■■□□□ 1.47
SCAMP4-204ENST00000414057 MINK1Q8N4C8 1332 aaPredicted RBP24.25■■□□□ 1.47
SCAMP4-204ENST00000414057 HIRIP3Q9BW71 556 aaPredicted RBP24.25■■□□□ 1.47
SCAMP4-204ENST00000414057 WASLO00401 505 aaPredicted RBP24.23■■□□□ 1.47
SCAMP4-204ENST00000414057 SBNO1A3KN83 1393 aa24.22■■□□□ 1.47
SCAMP4-204ENST00000414057 HAP1P54257 671 aaPredicted RBP24.22■■□□□ 1.47
SCAMP4-204ENST00000414057 PMFBP1Q8TBY8 1022 aa24.21■■□□□ 1.47
SCAMP4-204ENST00000414057 TNS3Q68CZ2 1445 aa24.21■■□□□ 1.47
SCAMP4-204ENST00000414057 ARHGEF10O15013 1369 aa24.2■■□□□ 1.46
SCAMP4-204ENST00000414057 LMOD2Q6P5Q4 547 aa24.19■■□□□ 1.46
SCAMP4-204ENST00000414057 TIMELESSQ9UNS1 1208 aa24.19■■□□□ 1.46
SCAMP4-204ENST00000414057 GPRASP1Q5JY77 1395 aa24.18■■□□□ 1.46
SCAMP4-204ENST00000414057 UPF1Q92900 1129 aaKnown RBP eCLIP24.18■■□□□ 1.462e-7■■■■■ 55.8
SCAMP4-204ENST00000414057 TULP4Q9NRJ4 1543 aa24.17■■□□□ 1.46
SCAMP4-204ENST00000414057 RGPD8O14715 1765 aaPredicted RBP24.17■■□□□ 1.46
SCAMP4-204ENST00000414057 RGS12O14924 1447 aa24.16■■□□□ 1.46
SCAMP4-204ENST00000414057 ATRNO75882 1429 aa24.15■■□□□ 1.46
SCAMP4-204ENST00000414057 USP32Q8NFA0 1604 aa24.14■■□□□ 1.46
SCAMP4-204ENST00000414057 KIAA1210Q9ULL0 1709 aa24.14■■□□□ 1.46
SCAMP4-204ENST00000414057 NGDNQ8NEJ9 315 aaKnown RBP24.14■■□□□ 1.46
SCAMP4-204ENST00000414057 PRR36Q9H6K5 1346 aa24.14■■□□□ 1.45
SCAMP4-204ENST00000414057 BCL9LQ86UU0 1499 aa24.13■■□□□ 1.45
SCAMP4-204ENST00000414057 ARHGEF28Q8N1W1 1705 aaKnown RBP24.12■■□□□ 1.45
SCAMP4-204ENST00000414057 MARF1Q9Y4F3 1742 aaKnown RBP24.12■■□□□ 1.45
SCAMP4-204ENST00000414057 UNC5CLQ8IV45 518 aa24.12■■□□□ 1.45
SCAMP4-204ENST00000414057 NUDT16Q96DE0 195 aaKnown RBP24.11■■□□□ 1.45
SCAMP4-204ENST00000414057 NBPF1Q3BBV0 1214 aa24.1■■□□□ 1.45
SCAMP4-204ENST00000414057 CABLES1Q8TDN4 633 aa24.1■■□□□ 1.45
SCAMP4-204ENST00000414057 GJD4Q96KN9 370 aaPredicted RBP24.1■■□□□ 1.45
SCAMP4-204ENST00000414057 CDK19Q9BWU1 502 aa24.1■■□□□ 1.45
SCAMP4-204ENST00000414057 L3MBTL2Q969R5 705 aa24.09■■□□□ 1.45
SCAMP4-204ENST00000414057 SLIT2O94813 1529 aa24.09■■□□□ 1.45
SCAMP4-204ENST00000414057 PLEKHG5O94827 1062 aa24.08■■□□□ 1.45
SCAMP4-204ENST00000414057 ATAD2Q6PL18 1390 aa24.07■■□□□ 1.44
SCAMP4-204ENST00000414057 CCDC61Q9Y6R9 512 aa24.07■■□□□ 1.44
SCAMP4-204ENST00000414057 PAK3O75914 559 aaPredicted RBP24.06■■□□□ 1.44
SCAMP4-204ENST00000414057 SIN3AQ96ST3 1273 aa24.06■■□□□ 1.44
SCAMP4-204ENST00000414057 ATP7BP35670 1465 aa24.05■■□□□ 1.44
SCAMP4-204ENST00000414057 NEUROD1Q13562 356 aa24.05■■□□□ 1.44
SCAMP4-204ENST00000414057 CENPJQ9HC77 1338 aaPredicted RBP24.05■■□□□ 1.44
SCAMP4-204ENST00000414057 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.04■■□□□ 1.44
SCAMP4-204ENST00000414057 ITSN1Q15811 1721 aa24.03■■□□□ 1.44
SCAMP4-204ENST00000414057 TONSLQ96HA7 1378 aa24.01■■□□□ 1.43
SCAMP4-204ENST00000414057 VPS72Q15906 364 aa24.01■■□□□ 1.43
SCAMP4-204ENST00000414057 TRPM3Q9HCF6 1732 aaPredicted RBP24.01■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms