RNA–Protein interactions for RNA: ENST00000412141.1

LINC00963-201, long intergenic non-protein coding RNA 963, humanhuman

TSL 1 (best)

Gene LINC00963, Length 739 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-201ENST00000412141 PIK3C2GO75747 1445 aa17.01■□□□□ 0.31
LINC00963-201ENST00000412141 DCAF11Q8TEB1 546 aa17■□□□□ 0.31
LINC00963-201ENST00000412141 C14orf93Q9H972 538 aaKnown RBP17■□□□□ 0.31
LINC00963-201ENST00000412141 IFT172Q9UG01 1749 aa16.99■□□□□ 0.31
LINC00963-201ENST00000412141 YTHDC2Q9H6S0 1430 aaKnown RBP16.98■□□□□ 0.31
LINC00963-201ENST00000412141 XPCQ01831 940 aaPredicted RBP16.98■□□□□ 0.31
LINC00963-201ENST00000412141 NHSL1Q5SYE7 1610 aa16.98■□□□□ 0.31
LINC00963-201ENST00000412141 ABCC11Q96J66 1382 aa16.98■□□□□ 0.31
LINC00963-201ENST00000412141 HRCP23327 699 aa16.97■□□□□ 0.31
LINC00963-201ENST00000412141 PRAG1Q86YV5 1406 aa16.96■□□□□ 0.31
LINC00963-201ENST00000412141 FOXO3O43524 673 aa16.96■□□□□ 0.31
LINC00963-201ENST00000412141 DHX57Q6P158 1386 aaKnown RBP16.96■□□□□ 0.31
LINC00963-201ENST00000412141 ADAMTS2O95450 1211 aa16.95■□□□□ 0.3
LINC00963-201ENST00000412141 ZNF772Q68DY9 489 aaPredicted RBP16.95■□□□□ 0.3
LINC00963-201ENST00000412141 PRAM1Q96QH2 718 aa16.95■□□□□ 0.3
LINC00963-201ENST00000412141 POGKQ9P215 609 aa16.95■□□□□ 0.3
LINC00963-201ENST00000412141 TECPR2O15040 1411 aa16.95■□□□□ 0.3
LINC00963-201ENST00000412141 PNPLA6Q8IY17 1366 aa16.94■□□□□ 0.3
LINC00963-201ENST00000412141 C8orf37Q96NL8 207 aa16.94■□□□□ 0.3
LINC00963-201ENST00000412141 TRAK1Q9UPV9 953 aa16.93■□□□□ 0.3
LINC00963-201ENST00000412141 SOS2Q07890 1332 aaPredicted RBP16.93■□□□□ 0.3
LINC00963-201ENST00000412141 MYOM2P54296 1465 aa16.93■□□□□ 0.3
LINC00963-201ENST00000412141 NRXN1Q9ULB1 1477 aa16.93■□□□□ 0.3
LINC00963-201ENST00000412141 AFF2P51816 1311 aa16.92■□□□□ 0.3
LINC00963-201ENST00000412141 PLEKHG5O94827 1062 aa16.91■□□□□ 0.3
LINC00963-201ENST00000412141 CDC42BPGQ6DT37 1551 aa16.9■□□□□ 0.3
LINC00963-201ENST00000412141 NGLY1Q96IV0 654 aa16.9■□□□□ 0.3
LINC00963-201ENST00000412141 HIRIP3Q9BW71 556 aaPredicted RBP16.9■□□□□ 0.3
LINC00963-201ENST00000412141 NPHP3Q7Z494 1330 aa16.9■□□□□ 0.3
LINC00963-201ENST00000412141 SIRT1Q96EB6 747 aa16.89■□□□□ 0.29
LINC00963-201ENST00000412141 MINK1Q8N4C8 1332 aaPredicted RBP16.88■□□□□ 0.29
LINC00963-201ENST00000412141 KNDC1Q76NI1 1749 aa16.87■□□□□ 0.29
LINC00963-201ENST00000412141 LAMC1P11047 1609 aa16.86■□□□□ 0.29
LINC00963-201ENST00000412141 RXRBP28702 533 aa16.86■□□□□ 0.29
LINC00963-201ENST00000412141 KRT28Q7Z3Y7 464 aa16.85■□□□□ 0.29
LINC00963-201ENST00000412141 PMFBP1Q8TBY8 1022 aa16.85■□□□□ 0.29
LINC00963-201ENST00000412141 UPF1Q92900 1129 aaKnown RBP eCLIP16.85■□□□□ 0.292e-6■■□□□ 14
LINC00963-201ENST00000412141 QTRT2Q9H974 415 aaKnown RBP16.85■□□□□ 0.29
LINC00963-201ENST00000412141 PHF8Q9UPP1 1060 aa16.85■□□□□ 0.29
LINC00963-201ENST00000412141 CDK12Q9NYV4 1490 aaPredicted RBP16.85■□□□□ 0.29
LINC00963-201ENST00000412141 LMOD2Q6P5Q4 547 aa16.84■□□□□ 0.29
LINC00963-201ENST00000412141 PXDNQ92626 1479 aa16.83■□□□□ 0.28
LINC00963-201ENST00000412141 FMN2Q9NZ56 1722 aa16.82■□□□□ 0.28
LINC00963-201ENST00000412141 ADGRB1O14514 1584 aa16.82■□□□□ 0.28
LINC00963-201ENST00000412141 STAC3Q96MF2 364 aa16.82■□□□□ 0.28
LINC00963-201ENST00000412141 PSME1Q06323 249 aa16.81■□□□□ 0.28
LINC00963-201ENST00000412141 NEUROD1Q13562 356 aa16.81■□□□□ 0.28
LINC00963-201ENST00000412141 USP21Q9UK80 565 aa16.81■□□□□ 0.28
LINC00963-201ENST00000412141 RGS12O14924 1447 aa16.8■□□□□ 0.28
LINC00963-201ENST00000412141 SIN3AQ96ST3 1273 aa16.8■□□□□ 0.28
LINC00963-201ENST00000412141 SPATA31A3Q5VYP0 1347 aa16.79■□□□□ 0.28
LINC00963-201ENST00000412141 HAP1P54257 671 aaPredicted RBP16.79■□□□□ 0.28
LINC00963-201ENST00000412141 NBPF1Q3BBV0 1214 aa16.79■□□□□ 0.28
LINC00963-201ENST00000412141 CABLES1Q8TDN4 633 aa16.79■□□□□ 0.28
LINC00963-201ENST00000412141 DLC1Q96QB1 1528 aa16.79■□□□□ 0.28
LINC00963-201ENST00000412141 RGPD8O14715 1765 aaPredicted RBP16.79■□□□□ 0.28
LINC00963-201ENST00000412141 WASLO00401 505 aaPredicted RBP16.78■□□□□ 0.28
LINC00963-201ENST00000412141 RBM6P78332 1123 aaKnown RBP16.77■□□□□ 0.28
LINC00963-201ENST00000412141 PRR36Q9H6K5 1346 aa16.76■□□□□ 0.27
LINC00963-201ENST00000412141 L3MBTL2Q969R5 705 aa16.76■□□□□ 0.27
LINC00963-201ENST00000412141 COL22A1Q8NFW1 1626 aaPredicted RBP16.76■□□□□ 0.27
LINC00963-201ENST00000412141 FNBP4Q8N3X1 1017 aaPredicted RBP16.75■□□□□ 0.27
LINC00963-201ENST00000412141 NGDNQ8NEJ9 315 aaKnown RBP16.74■□□□□ 0.27
LINC00963-201ENST00000412141 TRPC5Q9UL62 973 aaPredicted RBP16.74■□□□□ 0.27
LINC00963-201ENST00000412141 KIF1AQ12756 1690 aa16.74■□□□□ 0.27
LINC00963-201ENST00000412141 CDK19Q9BWU1 502 aa16.73■□□□□ 0.27
LINC00963-201ENST00000412141 ANKARQ7Z5J8 1434 aa16.72■□□□□ 0.27
LINC00963-201ENST00000412141 PAK3O75914 559 aaPredicted RBP16.72■□□□□ 0.27
LINC00963-201ENST00000412141 NUDT16Q96DE0 195 aaKnown RBP16.72■□□□□ 0.27
LINC00963-201ENST00000412141 TNS3Q68CZ2 1445 aa16.71■□□□□ 0.27
LINC00963-201ENST00000412141 USP32Q8NFA0 1604 aa16.71■□□□□ 0.27
LINC00963-201ENST00000412141 GPRASP1Q5JY77 1395 aa16.71■□□□□ 0.27
LINC00963-201ENST00000412141 ADGRB2O60241 1585 aa16.7■□□□□ 0.26
LINC00963-201ENST00000412141 SBNO1A3KN83 1393 aa16.69■□□□□ 0.26
LINC00963-201ENST00000412141 EIF3AQ14152 1382 aaKnown RBP16.69■□□□□ 0.26
LINC00963-201ENST00000412141 ATRNO75882 1429 aa16.69■□□□□ 0.26
LINC00963-201ENST00000412141 ARHGEF28Q8N1W1 1705 aaKnown RBP16.68■□□□□ 0.26
LINC00963-201ENST00000412141 TULP4Q9NRJ4 1543 aa16.68■□□□□ 0.26
LINC00963-201ENST00000412141 BCL9LQ86UU0 1499 aa16.67■□□□□ 0.26
LINC00963-201ENST00000412141 ARHGEF10O15013 1369 aa16.67■□□□□ 0.26
LINC00963-201ENST00000412141 EP400Q96L91 3159 aa16.67■□□□□ 0.26
LINC00963-201ENST00000412141 SRPK2P78362 688 aaKnown RBP16.66■□□□□ 0.26
LINC00963-201ENST00000412141 NUTM2GQ5VZR2 741 aa16.66■□□□□ 0.26
LINC00963-201ENST00000412141 UNC5CLQ8IV45 518 aa16.66■□□□□ 0.26
LINC00963-201ENST00000412141 CCDC9Q9Y3X0 531 aaKnown RBP16.66■□□□□ 0.26
LINC00963-201ENST00000412141 SRCAPQ6ZRS2 3230 aa16.65■□□□□ 0.26
LINC00963-201ENST00000412141 GJD4Q96KN9 370 aaPredicted RBP16.65■□□□□ 0.26
LINC00963-201ENST00000412141 CABP2Q9NPB3 220 aa16.65■□□□□ 0.26
LINC00963-201ENST00000412141 CENPJQ9HC77 1338 aaPredicted RBP16.65■□□□□ 0.26
LINC00963-201ENST00000412141 MARF1Q9Y4F3 1742 aaKnown RBP16.65■□□□□ 0.26
LINC00963-201ENST00000412141 ATAD2Q6PL18 1390 aa16.64■□□□□ 0.26
LINC00963-201ENST00000412141 FAM83GA6ND36 823 aa16.64■□□□□ 0.25
LINC00963-201ENST00000412141 ATP7BP35670 1465 aa16.63■□□□□ 0.25
LINC00963-201ENST00000412141 CCDC61Q9Y6R9 512 aa16.63■□□□□ 0.25
LINC00963-201ENST00000412141 ACEP12821 1306 aa16.63■□□□□ 0.25
LINC00963-201ENST00000412141 KIAA1210Q9ULL0 1709 aa16.62■□□□□ 0.25
LINC00963-201ENST00000412141 SLIT2O94813 1529 aa16.61■□□□□ 0.25
LINC00963-201ENST00000412141 TRIM26Q12899 539 aaPredicted RBP16.61■□□□□ 0.25
LINC00963-201ENST00000412141 NBPF8Q3BBV2 869 aa16.61■□□□□ 0.25
LINC00963-201ENST00000412141 BTG4Q9NY30 223 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms