RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 EIF4G2P78344 907 aaKnown RBP eCLIP15.9■□□□□ 0.14
LINC00539-201ENST00000411525 USP47Q96K76 1375 aa15.89■□□□□ 0.13
LINC00539-201ENST00000411525 SETD1AO15047 1707 aaKnown RBP15.89■□□□□ 0.13
LINC00539-201ENST00000411525 PIK3C2GO75747 1445 aa15.89■□□□□ 0.13
LINC00539-201ENST00000411525 LRP6O75581 1613 aa15.89■□□□□ 0.13
LINC00539-201ENST00000411525 ASXL1Q8IXJ9 1541 aa15.89■□□□□ 0.13
LINC00539-201ENST00000411525 METP08581 1390 aa15.88■□□□□ 0.13
LINC00539-201ENST00000411525 NHSL1Q5SYE7 1610 aa15.88■□□□□ 0.13
LINC00539-201ENST00000411525 HSPA5P11021 654 aaKnown RBP15.88■□□□□ 0.13
LINC00539-201ENST00000411525 LRRC59Q96AG4 307 aaKnown RBP15.88■□□□□ 0.13
LINC00539-201ENST00000411525 ADGRF5Q8IZF2 1346 aa15.88■□□□□ 0.13
LINC00539-201ENST00000411525 MST1RQ04912 1400 aa15.87■□□□□ 0.13
LINC00539-201ENST00000411525 VGFO15240 615 aaPredicted RBP15.87■□□□□ 0.13
LINC00539-201ENST00000411525 CARD11Q9BXL7 1154 aa15.87■□□□□ 0.13
LINC00539-201ENST00000411525 ADGRL3Q9HAR2 1447 aa15.86■□□□□ 0.13
LINC00539-201ENST00000411525 NALCNQ8IZF0 1738 aa15.85■□□□□ 0.13
LINC00539-201ENST00000411525 NUTM2BA6NNL0 878 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-201ENST00000411525 NUTM2EB1AL46 878 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-201ENST00000411525 NBPF1Q3BBV0 1214 aa15.84■□□□□ 0.13
LINC00539-201ENST00000411525 NUTM2AQ8IVF1 878 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-201ENST00000411525 HIRIP3Q9BW71 556 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-201ENST00000411525 RXRBP28702 533 aa15.83■□□□□ 0.12
LINC00539-201ENST00000411525 PTCH1Q13635 1447 aa15.82■□□□□ 0.12
LINC00539-201ENST00000411525 ADGRB1O14514 1584 aa15.81■□□□□ 0.12
LINC00539-201ENST00000411525 CDK12Q9NYV4 1490 aaPredicted RBP15.8■□□□□ 0.12
LINC00539-201ENST00000411525 AFF2P51816 1311 aa15.79■□□□□ 0.12
LINC00539-201ENST00000411525 CFAP70Q5T0N1 1121 aa15.79■□□□□ 0.12
LINC00539-201ENST00000411525 C1orf167Q5SNV9 1468 aa15.78■□□□□ 0.12
LINC00539-201ENST00000411525 DIEXFQ68CQ4 756 aaKnown RBP15.78■□□□□ 0.12
LINC00539-201ENST00000411525 EIF3AQ14152 1382 aaKnown RBP15.77■□□□□ 0.12
LINC00539-201ENST00000411525 PNPLA6Q8IY17 1366 aa15.77■□□□□ 0.12
LINC00539-201ENST00000411525 UPF1Q92900 1129 aaKnown RBP eCLIP15.77■□□□□ 0.12
LINC00539-201ENST00000411525 C14orf93Q9H972 538 aaKnown RBP15.77■□□□□ 0.12
LINC00539-201ENST00000411525 C8orf37Q96NL8 207 aa15.76■□□□□ 0.11
LINC00539-201ENST00000411525 ROBO2Q9HCK4 1378 aa15.75■□□□□ 0.11
LINC00539-201ENST00000411525 DDX17Q92841 729 aaKnown RBP15.75■□□□□ 0.11
LINC00539-201ENST00000411525 SOS2Q07890 1332 aaPredicted RBP15.74■□□□□ 0.11
LINC00539-201ENST00000411525 ST20-MTHFSA0A0A6YYL1 179 aa15.74■□□□□ 0.11
LINC00539-201ENST00000411525 RBM6P78332 1123 aaKnown RBP15.74■□□□□ 0.11
LINC00539-201ENST00000411525 ARHGEF28Q8N1W1 1705 aaKnown RBP15.74■□□□□ 0.11
LINC00539-201ENST00000411525 CCDC7Q96M83 1385 aa15.74■□□□□ 0.11
LINC00539-201ENST00000411525 WASHC2AQ641Q2 1341 aa15.73■□□□□ 0.11
LINC00539-201ENST00000411525 NGLY1Q96IV0 654 aa15.73■□□□□ 0.11
LINC00539-201ENST00000411525 QTRT2Q9H974 415 aaKnown RBP15.73■□□□□ 0.11
LINC00539-201ENST00000411525 ORAI2Q96SN7 254 aa15.72■□□□□ 0.11
LINC00539-201ENST00000411525 QRICH2Q9H0J4 1663 aa15.71■□□□□ 0.11
LINC00539-201ENST00000411525 KIF7Q2M1P5 1343 aa15.7■□□□□ 0.1
LINC00539-201ENST00000411525 CDC42BPGQ6DT37 1551 aa15.7■□□□□ 0.1
LINC00539-201ENST00000411525 NPHP3Q7Z494 1330 aa15.69■□□□□ 0.1
LINC00539-201ENST00000411525 COL22A1Q8NFW1 1626 aaPredicted RBP15.69■□□□□ 0.1
LINC00539-201ENST00000411525 C11orf95C9JLR9 678 aaPredicted RBP15.69■□□□□ 0.1
LINC00539-201ENST00000411525 ADAMTS2O95450 1211 aa15.69■□□□□ 0.1
LINC00539-201ENST00000411525 KNDC1Q76NI1 1749 aa15.68■□□□□ 0.1
LINC00539-201ENST00000411525 LRPPRCP42704 1394 aaKnown RBP15.68■□□□□ 0.1
LINC00539-201ENST00000411525 TMEM132EQ6IEE7 984 aa15.68■□□□□ 0.1
LINC00539-201ENST00000411525 TESK2Q96S53 571 aa15.68■□□□□ 0.1
LINC00539-201ENST00000411525 YTHDC2Q9H6S0 1430 aaKnown RBP15.68■□□□□ 0.1
LINC00539-201ENST00000411525 DDX10Q13206 875 aaKnown RBP15.67■□□□□ 0.1
LINC00539-201ENST00000411525 ESCO1Q5FWF5 840 aa15.67■□□□□ 0.1
LINC00539-201ENST00000411525 USP21Q9UK80 565 aa15.67■□□□□ 0.1
LINC00539-201ENST00000411525 TRPC5Q9UL62 973 aaPredicted RBP15.67■□□□□ 0.1
LINC00539-201ENST00000411525 DLC1Q96QB1 1528 aa15.67■□□□□ 0.1
LINC00539-201ENST00000411525 SBNO2Q9Y2G9 1366 aa15.66■□□□□ 0.1
LINC00539-201ENST00000411525 RGS12O14924 1447 aa15.66■□□□□ 0.1
LINC00539-201ENST00000411525 TECPR2O15040 1411 aa15.66■□□□□ 0.1
LINC00539-201ENST00000411525 MARF1Q9Y4F3 1742 aaKnown RBP15.65■□□□□ 0.1
LINC00539-201ENST00000411525 FNBP4Q8N3X1 1017 aaPredicted RBP15.65■□□□□ 0.1
LINC00539-201ENST00000411525 TRAK1Q9UPV9 953 aa15.65■□□□□ 0.1
LINC00539-201ENST00000411525 CENPJQ9HC77 1338 aaPredicted RBP15.65■□□□□ 0.1
LINC00539-201ENST00000411525 ABCC11Q96J66 1382 aa15.64■□□□□ 0.09
LINC00539-201ENST00000411525 TMF1P82094 1093 aa15.64■□□□□ 0.09
LINC00539-201ENST00000411525 STK26Q9P289 416 aa15.64■□□□□ 0.09
LINC00539-201ENST00000411525 ATAD2Q6PL18 1390 aa15.62■□□□□ 0.09
LINC00539-201ENST00000411525 FOXO3O43524 673 aa15.62■□□□□ 0.09
LINC00539-201ENST00000411525 PXDNQ92626 1479 aa15.62■□□□□ 0.09
LINC00539-201ENST00000411525 SLC24A1O60721 1099 aa15.61■□□□□ 0.09
LINC00539-201ENST00000411525 WAPLQ7Z5K2 1190 aa15.61■□□□□ 0.09
LINC00539-201ENST00000411525 SIRT1Q96EB6 747 aa15.61■□□□□ 0.09
LINC00539-201ENST00000411525 POLR3GLQ9BT43 218 aa15.61■□□□□ 0.09
LINC00539-201ENST00000411525 KIF1AQ12756 1690 aa15.6■□□□□ 0.09
LINC00539-201ENST00000411525 FMN2Q9NZ56 1722 aa15.6■□□□□ 0.09
LINC00539-201ENST00000411525 ATRNO75882 1429 aa15.6■□□□□ 0.09
LINC00539-201ENST00000411525 MYOM1P52179 1685 aa15.59■□□□□ 0.09
LINC00539-201ENST00000411525 TULP4Q9NRJ4 1543 aa15.58■□□□□ 0.09
LINC00539-201ENST00000411525 CDCA8Q53HL2 280 aa15.58■□□□□ 0.08
LINC00539-201ENST00000411525 EP400Q96L91 3159 aa15.57■□□□□ 0.08
LINC00539-201ENST00000411525 NUTM2FA1L443 756 aa15.57■□□□□ 0.08
LINC00539-201ENST00000411525 XPCQ01831 940 aaPredicted RBP15.57■□□□□ 0.08
LINC00539-201ENST00000411525 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.57■□□□□ 0.08
LINC00539-201ENST00000411525 RGPD8O14715 1765 aaPredicted RBP15.57■□□□□ 0.08
LINC00539-201ENST00000411525 CCDC125Q86Z20 511 aa15.56■□□□□ 0.08
LINC00539-201ENST00000411525 BCL9LQ86UU0 1499 aa15.55■□□□□ 0.08
LINC00539-201ENST00000411525 PLEKHH1Q9ULM0 1364 aa15.55■□□□□ 0.08
LINC00539-201ENST00000411525 SPATA31A3Q5VYP0 1347 aa15.55■□□□□ 0.08
LINC00539-201ENST00000411525 PSME1Q06323 249 aa15.55■□□□□ 0.08
LINC00539-201ENST00000411525 GJD4Q96KN9 370 aaPredicted RBP15.55■□□□□ 0.08
LINC00539-201ENST00000411525 PRAM1Q96QH2 718 aa15.55■□□□□ 0.08
LINC00539-201ENST00000411525 KRT28Q7Z3Y7 464 aa15.54■□□□□ 0.08
LINC00539-201ENST00000411525 MIER1Q8N108 512 aa15.54■□□□□ 0.08
LINC00539-201ENST00000411525 POGKQ9P215 609 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms