RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 HSP90AB4PQ58FF6 505 aa15.39■□□□□ 0.05
COL6A3-206ENST00000409809 APBB1O00213 710 aa15.39■□□□□ 0.05
COL6A3-206ENST00000409809 ODF2Q5BJF6 829 aa15.39■□□□□ 0.05
COL6A3-206ENST00000409809 CT47A1Q5JQC4 288 aaPredicted RBP15.39■□□□□ 0.05
COL6A3-206ENST00000409809 CCDC146Q8IYE0 955 aa15.38■□□□□ 0.05
COL6A3-206ENST00000409809 ANKRD45Q5TZF3 282 aa15.38■□□□□ 0.05
COL6A3-206ENST00000409809 SCAPERQ9BY12 1400 aa15.38■□□□□ 0.05
COL6A3-206ENST00000409809 NAP1L1P55209 391 aaKnown RBP15.38■□□□□ 0.05
COL6A3-206ENST00000409809 CDC45O75419 566 aa15.38■□□□□ 0.05
COL6A3-206ENST00000409809 FILIP1Q7Z7B0 1213 aa15.38■□□□□ 0.05
COL6A3-206ENST00000409809 BRMS1Q9HCU9 246 aa15.37■□□□□ 0.05
COL6A3-206ENST00000409809 ERC2O15083 957 aa15.37■□□□□ 0.05
COL6A3-206ENST00000409809 MARCH6O60337 910 aa15.37■□□□□ 0.05
COL6A3-206ENST00000409809 CAVIN2O95810 425 aa15.37■□□□□ 0.05
COL6A3-206ENST00000409809 CLASRPQ8N2M8 674 aaKnown RBP15.37■□□□□ 0.05
COL6A3-206ENST00000409809 ZNF396Q96N95 335 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-206ENST00000409809 EPS15P42566 896 aa15.37■□□□□ 0.05
COL6A3-206ENST00000409809 DHX16O60231 1041 aaKnown RBP15.37■□□□□ 0.05
COL6A3-206ENST00000409809 NBPF1Q3BBV0 1214 aa15.37■□□□□ 0.05
COL6A3-206ENST00000409809 PRKRIP1Q9H875 184 aaPredicted RBP15.37■□□□□ 0.05
COL6A3-206ENST00000409809 PLEKHH2Q8IVE3 1493 aa15.37■□□□□ 0.05
COL6A3-206ENST00000409809 CUX1P39880 1505 aa15.36■□□□□ 0.05
COL6A3-206ENST00000409809 AEBP1Q8IUX7 1158 aa15.36■□□□□ 0.05
COL6A3-206ENST00000409809 FEZ1Q99689 392 aa15.36■□□□□ 0.05
COL6A3-206ENST00000409809 XBP1P17861 261 aa15.36■□□□□ 0.05
COL6A3-206ENST00000409809 UBXN4Q92575 508 aa15.36■□□□□ 0.05
COL6A3-206ENST00000409809 RBM33Q96EV2 1170 aaKnown RBP15.36■□□□□ 0.05
COL6A3-206ENST00000409809 BRD4O60885 1362 aaPredicted RBP15.36■□□□□ 0.05
COL6A3-206ENST00000409809 PLEKHH1Q9ULM0 1364 aa15.35■□□□□ 0.05
COL6A3-206ENST00000409809 SRPK2P78362 688 aaKnown RBP15.35■□□□□ 0.05
COL6A3-206ENST00000409809 KIF18AQ8NI77 898 aa15.35■□□□□ 0.05
COL6A3-206ENST00000409809 SDF4Q9BRK5 362 aa15.35■□□□□ 0.05
COL6A3-206ENST00000409809 HIP1O00291 1037 aa15.35■□□□□ 0.05
COL6A3-206ENST00000409809 OFD1O75665 1012 aa15.35■□□□□ 0.05
COL6A3-206ENST00000409809 EIF4G1Q04637 1599 aaKnown RBP15.35■□□□□ 0.05
COL6A3-206ENST00000409809 PLCD4Q9BRC7 762 aa15.35■□□□□ 0.05
COL6A3-206ENST00000409809 CRACR2AQ9BSW2 395 aa15.35■□□□□ 0.05
COL6A3-206ENST00000409809 TXLNAP40222 546 aa15.35■□□□□ 0.05
COL6A3-206ENST00000409809 RBM28Q9NW13 759 aaKnown RBP15.35■□□□□ 0.05
COL6A3-206ENST00000409809 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.35■□□□□ 0.05
COL6A3-206ENST00000409809 WDR33Q9C0J8 1336 aaKnown RBP15.35■□□□□ 0.05
COL6A3-206ENST00000409809 SEPT7Q16181 437 aaKnown RBP15.35■□□□□ 0.05
COL6A3-206ENST00000409809 API5Q9BZZ5 524 aaKnown RBP15.35■□□□□ 0.05
COL6A3-206ENST00000409809 TRDNQ13061 729 aa15.34■□□□□ 0.05
COL6A3-206ENST00000409809 TUBB4AP04350 444 aa15.34■□□□□ 0.05
COL6A3-206ENST00000409809 ZSCAN12O43309 604 aa15.33■□□□□ 0.04
COL6A3-206ENST00000409809 HSP90AB2PQ58FF8 381 aa15.33■□□□□ 0.04
COL6A3-206ENST00000409809 GOLGA6L9A6NEM1 432 aa15.33■□□□□ 0.04
COL6A3-206ENST00000409809 AMOTL1Q8IY63 956 aa15.33■□□□□ 0.04
COL6A3-206ENST00000409809 NOL8Q76FK4 1167 aaKnown RBP15.33■□□□□ 0.04
COL6A3-206ENST00000409809 CRBNQ96SW2 442 aa15.33■□□□□ 0.04
COL6A3-206ENST00000409809 ANKRD1Q15327 319 aa15.33■□□□□ 0.04
COL6A3-206ENST00000409809 CLUAP1Q96AJ1 413 aa15.32■□□□□ 0.04
COL6A3-206ENST00000409809 ZMYND15Q9H091 742 aa15.32■□□□□ 0.04
COL6A3-206ENST00000409809 RBM10P98175 930 aaKnown RBP15.32■□□□□ 0.04
COL6A3-206ENST00000409809 DZIP1LQ8IYY4 767 aaKnown RBP15.32■□□□□ 0.04
COL6A3-206ENST00000409809 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
COL6A3-206ENST00000409809 CCDC91Q7Z6B0 441 aa15.32■□□□□ 0.04
COL6A3-206ENST00000409809 GTF2A1P52655 376 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-206ENST00000409809 FOXD4L5Q5VV16 416 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-206ENST00000409809 FOXD4L4Q8WXT5 416 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-206ENST00000409809 PAXBP1Q9Y5B6 917 aa15.31■□□□□ 0.04
COL6A3-206ENST00000409809 MEX3CQ5U5Q3 659 aaKnown RBP15.31■□□□□ 0.04
COL6A3-206ENST00000409809 VPS37CA5D8V6 355 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-206ENST00000409809 ENOX2Q16206 610 aaKnown RBP15.31■□□□□ 0.04
COL6A3-206ENST00000409809 SMC2O95347 1197 aa15.31■□□□□ 0.04
COL6A3-206ENST00000409809 TMX4Q9H1E5 349 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-206ENST00000409809 ANO2Q9NQ90 1003 aa15.31■□□□□ 0.04
COL6A3-206ENST00000409809 RILPL2Q969X0 211 aa15.3■□□□□ 0.04
COL6A3-206ENST00000409809 MAGEC2Q9UBF1 373 aaPredicted RBP15.3■□□□□ 0.04
COL6A3-206ENST00000409809 PPFIBP1Q86W92 1011 aa15.3■□□□□ 0.04
COL6A3-206ENST00000409809 STIM1Q13586 685 aa15.3■□□□□ 0.04
COL6A3-206ENST00000409809 EXOC6Q8TAG9 804 aa15.3■□□□□ 0.04
COL6A3-206ENST00000409809 MIA2Q96PC5 1412 aa15.3■□□□□ 0.04
COL6A3-206ENST00000409809 CCDC181Q5TID7 509 aa15.3■□□□□ 0.04
COL6A3-206ENST00000409809 KIF20AO95235 890 aa15.29■□□□□ 0.04
COL6A3-206ENST00000409809 CCDC148Q8NFR7 591 aa15.29■□□□□ 0.04
COL6A3-206ENST00000409809 SLC4A3P48751 1232 aa15.29■□□□□ 0.04
COL6A3-206ENST00000409809 GIGYF2Q6Y7W6 1299 aaKnown RBP15.29■□□□□ 0.04
COL6A3-206ENST00000409809 PPM1EQ8WY54 764 aa15.29■□□□□ 0.04
COL6A3-206ENST00000409809 SWAP70Q9UH65 585 aa15.29■□□□□ 0.04
COL6A3-206ENST00000409809 CCDC83Q8IWF9 413 aa15.29■□□□□ 0.04
COL6A3-206ENST00000409809 PDILTQ8N807 584 aa15.29■□□□□ 0.04
COL6A3-206ENST00000409809 HS1BP3Q53T59 392 aa15.28■□□□□ 0.04
COL6A3-206ENST00000409809 CCDC144AA2RUR9 1427 aa15.28■□□□□ 0.04
COL6A3-206ENST00000409809 JAKMIP3Q5VZ66 844 aa15.28■□□□□ 0.04
COL6A3-206ENST00000409809 USP47Q96K76 1375 aa15.28■□□□□ 0.04
COL6A3-206ENST00000409809 IMMTQ16891 758 aaKnown RBP15.28■□□□□ 0.04
COL6A3-206ENST00000409809 CEP57L1Q8IYX8 460 aa15.28■□□□□ 0.04
COL6A3-206ENST00000409809 TCEAL9Q9UHQ7 104 aa15.28■□□□□ 0.04
COL6A3-206ENST00000409809 CCDC102AQ96A19 550 aa15.28■□□□□ 0.04
COL6A3-206ENST00000409809 SMTNL1A8MU46 457 aa15.27■□□□□ 0.04
COL6A3-206ENST00000409809 FRAT2O75474 233 aaPredicted RBP15.27■□□□□ 0.04
COL6A3-206ENST00000409809 SH3BGRP55822 239 aaPredicted RBP15.27■□□□□ 0.04
COL6A3-206ENST00000409809 CFAP57Q96MR6 1250 aa15.27■□□□□ 0.04
COL6A3-206ENST00000409809 BACH2Q9BYV9 841 aa15.27■□□□□ 0.04
COL6A3-206ENST00000409809 CPSF2Q9P2I0 782 aaKnown RBP15.27■□□□□ 0.04
COL6A3-206ENST00000409809 KRT222Q8N1A0 295 aa15.27■□□□□ 0.04
COL6A3-206ENST00000409809 ERICH2A1L162 156 aa15.27■□□□□ 0.04
COL6A3-206ENST00000409809 CFAP45Q9UL16 551 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms