RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 TRAK1Q9UPV9 953 aa32.13■■■□□ 2.73
PTCD3-203ENST00000409783 ATF3P18847 181 aa32.12■■■□□ 2.73
PTCD3-203ENST00000409783 SCAF1Q9H7N4 1312 aaKnown RBP32.11■■■□□ 2.73
PTCD3-203ENST00000409783 PRAM1Q96QH2 718 aa32.11■■■□□ 2.73
PTCD3-203ENST00000409783 MST1RQ04912 1400 aa32.09■■■□□ 2.73
PTCD3-203ENST00000409783 ROBO1Q9Y6N7 1651 aa32.09■■■□□ 2.73
PTCD3-203ENST00000409783 CDC42BPGQ6DT37 1551 aa32.09■■■□□ 2.73
PTCD3-203ENST00000409783 TIMELESSQ9UNS1 1208 aa32.05■■■□□ 2.72
PTCD3-203ENST00000409783 POGKQ9P215 609 aa32.03■■■□□ 2.72
PTCD3-203ENST00000409783 GPRASP1Q5JY77 1395 aa32.03■■■□□ 2.72
PTCD3-203ENST00000409783 SAFB2Q14151 953 aaKnown RBP eCLIP32.02■■■□□ 2.72
PTCD3-203ENST00000409783 RALGAPBQ86X10 1494 aa32.02■■■□□ 2.72
PTCD3-203ENST00000409783 ROCK2O75116 1388 aaKnown RBP32.01■■■□□ 2.71
PTCD3-203ENST00000409783 ADGRB2O60241 1585 aa32.01■■■□□ 2.71
PTCD3-203ENST00000409783 FMN2Q9NZ56 1722 aa32■■■□□ 2.71
PTCD3-203ENST00000409783 C1orf167Q5SNV9 1468 aa31.99■■■□□ 2.71
PTCD3-203ENST00000409783 HSPA1LP34931 641 aa31.99■■■□□ 2.71
PTCD3-203ENST00000409783 BRINP3Q76B58 766 aa31.96■■■□□ 2.71
PTCD3-203ENST00000409783 MINK1Q8N4C8 1332 aaPredicted RBP31.93■■■□□ 2.7
PTCD3-203ENST00000409783 HIRIP3Q9BW71 556 aaPredicted RBP31.9■■■□□ 2.7
PTCD3-203ENST00000409783 AHDC1Q5TGY3 1603 aaPredicted RBP31.89■■■□□ 2.7
PTCD3-203ENST00000409783 QRICH2Q9H0J4 1663 aa31.89■■■□□ 2.7
PTCD3-203ENST00000409783 RGPD8O14715 1765 aaPredicted RBP31.89■■■□□ 2.69
PTCD3-203ENST00000409783 ORAI2Q96SN7 254 aa31.88■■■□□ 2.69
PTCD3-203ENST00000409783 CENPJQ9HC77 1338 aaPredicted RBP31.88■■■□□ 2.69
PTCD3-203ENST00000409783 NHSL1Q5SYE7 1610 aa31.88■■■□□ 2.69
PTCD3-203ENST00000409783 USP32Q8NFA0 1604 aa31.88■■■□□ 2.69
PTCD3-203ENST00000409783 PHLPP1O60346 1717 aa31.87■■■□□ 2.69
PTCD3-203ENST00000409783 CARD11Q9BXL7 1154 aa31.87■■■□□ 2.69
PTCD3-203ENST00000409783 NUTM2FA1L443 756 aa31.86■■■□□ 2.69
PTCD3-203ENST00000409783 COL16A1Q07092 1604 aaPredicted RBP31.85■■■□□ 2.69
PTCD3-203ENST00000409783 WASLO00401 505 aaPredicted RBP31.84■■■□□ 2.69
PTCD3-203ENST00000409783 ANKARQ7Z5J8 1434 aa31.82■■■□□ 2.68
PTCD3-203ENST00000409783 TULP4Q9NRJ4 1543 aa31.81■■■□□ 2.68
PTCD3-203ENST00000409783 ESCO1Q5FWF5 840 aa31.8■■■□□ 2.68
PTCD3-203ENST00000409783 EIF3AQ14152 1382 aaKnown RBP31.8■■■□□ 2.68
PTCD3-203ENST00000409783 PRR36Q9H6K5 1346 aa31.79■■■□□ 2.68
PTCD3-203ENST00000409783 DDX17Q92841 729 aaKnown RBP31.78■■■□□ 2.68
PTCD3-203ENST00000409783 CDK19Q9BWU1 502 aa31.76■■■□□ 2.67
PTCD3-203ENST00000409783 KIF1AQ12756 1690 aa31.76■■■□□ 2.67
PTCD3-203ENST00000409783 ATP7BP35670 1465 aa31.74■■■□□ 2.67
PTCD3-203ENST00000409783 SBNO2Q9Y2G9 1366 aa31.72■■■□□ 2.67
PTCD3-203ENST00000409783 SOS2Q07890 1332 aaPredicted RBP31.71■■■□□ 2.67
PTCD3-203ENST00000409783 PHF8Q9UPP1 1060 aa31.7■■■□□ 2.67
PTCD3-203ENST00000409783 TOPAZ1Q8N9V7 1692 aa31.7■■■□□ 2.66
PTCD3-203ENST00000409783 ITSN1Q15811 1721 aa31.69■■■□□ 2.66
PTCD3-203ENST00000409783 NUDT16Q96DE0 195 aaKnown RBP31.69■■■□□ 2.66
PTCD3-203ENST00000409783 PXDNQ92626 1479 aa31.69■■■□□ 2.66
PTCD3-203ENST00000409783 FOXO3O43524 673 aa31.68■■■□□ 2.66
PTCD3-203ENST00000409783 NPHP3Q7Z494 1330 aa31.67■■■□□ 2.66
PTCD3-203ENST00000409783 SHPRHQ149N8 1683 aa31.65■■■□□ 2.66
PTCD3-203ENST00000409783 USP47Q96K76 1375 aa31.65■■■□□ 2.66
PTCD3-203ENST00000409783 JCADQ9P266 1359 aa31.65■■■□□ 2.66
PTCD3-203ENST00000409783 ST20-MTHFSA0A0A6YYL1 179 aa31.63■■■□□ 2.65
PTCD3-203ENST00000409783 PMFBP1Q8TBY8 1022 aa31.63■■■□□ 2.65
PTCD3-203ENST00000409783 TESK2Q96S53 571 aa31.63■■■□□ 2.65
PTCD3-203ENST00000409783 CABP2Q9NPB3 220 aa31.63■■■□□ 2.65
PTCD3-203ENST00000409783 EVC2Q86UK5 1308 aa31.63■■■□□ 2.65
PTCD3-203ENST00000409783 SRPK2P78362 688 aaKnown RBP31.62■■■□□ 2.65
PTCD3-203ENST00000409783 LRRC59Q96AG4 307 aaKnown RBP31.61■■■□□ 2.65
PTCD3-203ENST00000409783 XPCQ01831 940 aaPredicted RBP31.6■■■□□ 2.65
PTCD3-203ENST00000409783 CCDC61Q9Y6R9 512 aa31.6■■■□□ 2.65
PTCD3-203ENST00000409783 PNPLA6Q8IY17 1366 aa31.56■■■□□ 2.64
PTCD3-203ENST00000409783 PLEKHG3A1L390 1219 aa31.56■■■□□ 2.64
PTCD3-203ENST00000409783 KRT28Q7Z3Y7 464 aa31.56■■■□□ 2.64
PTCD3-203ENST00000409783 MED1Q15648 1581 aaPredicted RBP31.56■■■□□ 2.64
PTCD3-203ENST00000409783 TRPM3Q9HCF6 1732 aaPredicted RBP31.55■■■□□ 2.64
PTCD3-203ENST00000409783 POLR3AO14802 1390 aaPredicted RBP31.55■■■□□ 2.64
PTCD3-203ENST00000409783 PPIP5K1Q6PFW1 1433 aa31.54■■■□□ 2.64
PTCD3-203ENST00000409783 COL22A1Q8NFW1 1626 aaPredicted RBP31.51■■■□□ 2.63
PTCD3-203ENST00000409783 PSME1Q06323 249 aa31.51■■■□□ 2.63
PTCD3-203ENST00000409783 SPATA31A6Q5VVP1 1343 aa31.5■■■□□ 2.63
PTCD3-203ENST00000409783 SPATA31A3Q5VYP0 1347 aa31.5■■■□□ 2.63
PTCD3-203ENST00000409783 NGDNQ8NEJ9 315 aaKnown RBP31.5■■■□□ 2.63
PTCD3-203ENST00000409783 ACEP12821 1306 aa31.49■■■□□ 2.63
PTCD3-203ENST00000409783 SBNO1A3KN83 1393 aa31.49■■■□□ 2.63
PTCD3-203ENST00000409783 ATAD2Q6PL18 1390 aa31.48■■■□□ 2.63
PTCD3-203ENST00000409783 CABP1Q9NZU7 370 aa31.48■■■□□ 2.63
PTCD3-203ENST00000409783 LRP6O75581 1613 aa31.48■■■□□ 2.63
PTCD3-203ENST00000409783 PUS7Q96PZ0 661 aaKnown RBP31.47■■■□□ 2.63
PTCD3-203ENST00000409783 TNS3Q68CZ2 1445 aa31.47■■■□□ 2.63
PTCD3-203ENST00000409783 ALS2Q96Q42 1657 aa31.46■■■□□ 2.63
PTCD3-203ENST00000409783 DISP3Q9P2K9 1392 aa31.45■■■□□ 2.63
PTCD3-203ENST00000409783 SLC24A1O60721 1099 aa31.45■■■□□ 2.63
PTCD3-203ENST00000409783 EIF4G2P78344 907 aaKnown RBP eCLIP31.42■■■□□ 2.62
PTCD3-203ENST00000409783 AKAP12Q02952 1782 aa31.41■■■□□ 2.62
PTCD3-203ENST00000409783 HSPA5P11021 654 aaKnown RBP31.41■■■□□ 2.62
PTCD3-203ENST00000409783 TMF1P82094 1093 aa31.39■■■□□ 2.62
PTCD3-203ENST00000409783 CPSF1Q10570 1443 aaKnown RBP31.38■■■□□ 2.61
PTCD3-203ENST00000409783 NUTM2BA6NNL0 878 aaPredicted RBP31.37■■■□□ 2.61
PTCD3-203ENST00000409783 NUTM2EB1AL46 878 aaPredicted RBP31.37■■■□□ 2.61
PTCD3-203ENST00000409783 NUTM2AQ8IVF1 878 aaPredicted RBP31.37■■■□□ 2.61
PTCD3-203ENST00000409783 CD163L1Q9NR16 1453 aa31.37■■■□□ 2.61
PTCD3-203ENST00000409783 USP6P35125 1406 aa31.36■■■□□ 2.61
PTCD3-203ENST00000409783 ARHGEF10O15013 1369 aa31.36■■■□□ 2.61
PTCD3-203ENST00000409783 SSH2Q76I76 1423 aa31.35■■■□□ 2.61
PTCD3-203ENST00000409783 ABCA3Q99758 1704 aa31.34■■■□□ 2.61
PTCD3-203ENST00000409783 SLC12A5Q9H2X9 1139 aa31.33■■■□□ 2.61
PTCD3-203ENST00000409783 MON2Q7Z3U7 1717 aa31.32■■■□□ 2.61
PTCD3-203ENST00000409783 CRYBG1Q9Y4K1 1723 aa31.32■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms