RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 ADAMTS8Q9UP79 889 aa27.64■■■□□ 2.02
USP39-203ENST00000409470 MINK1Q8N4C8 1332 aaPredicted RBP27.64■■■□□ 2.02
USP39-203ENST00000409470 HDGFP51858 240 aaKnown RBP27.62■■■□□ 2.01
USP39-203ENST00000409470 ANKRD36BQ8N2N9 1353 aa27.61■■■□□ 2.01
USP39-203ENST00000409470 MORC1Q86VD1 984 aa27.6■■■□□ 2.01
USP39-203ENST00000409470 PDE3BQ13370 1112 aa27.59■■■□□ 2.01
USP39-203ENST00000409470 ERICH6BQ5W0A0 696 aa27.59■■■□□ 2.01
USP39-203ENST00000409470 CGNL1Q0VF96 1302 aa27.59■■■□□ 2.01
USP39-203ENST00000409470 USP32Q8NFA0 1604 aa27.58■■■□□ 2.01
USP39-203ENST00000409470 NINLQ9Y2I6 1382 aa27.57■■■□□ 2
USP39-203ENST00000409470 SETD1AO15047 1707 aaKnown RBP27.57■■■□□ 2
USP39-203ENST00000409470 ATAD2Q6PL18 1390 aa27.56■■■□□ 2
USP39-203ENST00000409470 DLC1Q96QB1 1528 aa27.56■■■□□ 2
USP39-203ENST00000409470 NRXN3Q9Y4C0 1643 aa27.54■■■□□ 2
USP39-203ENST00000409470 UBR1Q8IWV7 1749 aa27.54■■■□□ 2
USP39-203ENST00000409470 TMEM2Q9UHN6 1383 aa27.53■■■□□ 2
USP39-203ENST00000409470 CEBPAP49715 358 aaPredicted RBP27.53■■■□□ 2
USP39-203ENST00000409470 ABCC11Q96J66 1382 aa27.52■■■□□ 2
USP39-203ENST00000409470 CDK19Q9BWU1 502 aa27.52■■■□□ 2
USP39-203ENST00000409470 TNNT2P45379 298 aaPredicted RBP27.51■■■□□ 2
USP39-203ENST00000409470 WAPLQ7Z5K2 1190 aa27.51■■■□□ 2
USP39-203ENST00000409470 A0A1W2PP64 1363 aa27.5■■□□□ 1.99
USP39-203ENST00000409470 NLRP1Q9C000 1473 aa27.5■■□□□ 1.99
USP39-203ENST00000409470 NSD2O96028 1365 aa27.49■■□□□ 1.99
USP39-203ENST00000409470 METP08581 1390 aa27.49■■□□□ 1.99
USP39-203ENST00000409470 TERF2IPQ9NYB0 399 aa27.48■■□□□ 1.99
USP39-203ENST00000409470 POLR3AO14802 1390 aaPredicted RBP27.48■■□□□ 1.99
USP39-203ENST00000409470 RNF123Q5XPI4 1314 aa27.48■■□□□ 1.99
USP39-203ENST00000409470 PLEKHH1Q9ULM0 1364 aa27.48■■□□□ 1.99
USP39-203ENST00000409470 PLPPR3Q6T4P5 718 aa27.46■■□□□ 1.99
USP39-203ENST00000409470 CDCA7LQ96GN5 454 aa27.46■■□□□ 1.99
USP39-203ENST00000409470 PPP4R2Q9NY27 417 aa27.46■■□□□ 1.99
USP39-203ENST00000409470 FER1L4A9Z1Z3 1794 aa27.45■■□□□ 1.99
USP39-203ENST00000409470 C3P01024 1663 aa27.45■■□□□ 1.99
USP39-203ENST00000409470 HDGFL2Q7Z4V5 671 aaPredicted RBP27.43■■□□□ 1.98
USP39-203ENST00000409470 CCDC146Q8IYE0 955 aa27.43■■□□□ 1.98
USP39-203ENST00000409470 TXNDC2Q86VQ3 553 aa27.43■■□□□ 1.98
USP39-203ENST00000409470 CABP1Q9NZU7 370 aa27.41■■□□□ 1.98
USP39-203ENST00000409470 RCAN3Q9UKA8 241 aa27.41■■□□□ 1.98
USP39-203ENST00000409470 CD163L1Q9NR16 1453 aa27.4■■□□□ 1.98
USP39-203ENST00000409470 MTHFSP49914 203 aa27.39■■□□□ 1.98
USP39-203ENST00000409470 KNDC1Q76NI1 1749 aa27.39■■□□□ 1.97
USP39-203ENST00000409470 LTKP29376 864 aa27.38■■□□□ 1.97
USP39-203ENST00000409470 CFAP53Q96M91 514 aa27.38■■□□□ 1.97
USP39-203ENST00000409470 SIRT1Q96EB6 747 aa27.38■■□□□ 1.97
USP39-203ENST00000409470 EID1Q9Y6B2 187 aa27.38■■□□□ 1.97
USP39-203ENST00000409470 PLEKHG1Q9ULL1 1385 aa27.38■■□□□ 1.97
USP39-203ENST00000409470 FAM135BQ49AJ0 1406 aa27.37■■□□□ 1.97
USP39-203ENST00000409470 TECPR2O15040 1411 aa27.37■■□□□ 1.97
USP39-203ENST00000409470 GGNBP2Q9H3C7 697 aa27.36■■□□□ 1.97
USP39-203ENST00000409470 WASLO00401 505 aaPredicted RBP27.36■■□□□ 1.97
USP39-203ENST00000409470 ADAMTS13Q76LX8 1427 aa27.36■■□□□ 1.97
USP39-203ENST00000409470 APAF1O14727 1248 aa27.35■■□□□ 1.97
USP39-203ENST00000409470 CPS1P31327 1500 aa27.34■■□□□ 1.97
USP39-203ENST00000409470 SHPRHQ149N8 1683 aa27.33■■□□□ 1.97
USP39-203ENST00000409470 FYB1O15117 783 aa27.33■■□□□ 1.96
USP39-203ENST00000409470 RRP1P56182 461 aaKnown RBP27.33■■□□□ 1.96
USP39-203ENST00000409470 ZNF521Q96K83 1311 aa27.32■■□□□ 1.96
USP39-203ENST00000409470 GOLGA2Q08379 1002 aa27.32■■□□□ 1.96
USP39-203ENST00000409470 ATP7BP35670 1465 aa27.31■■□□□ 1.96
USP39-203ENST00000409470 MED14O60244 1454 aa27.3■■□□□ 1.96
USP39-203ENST00000409470 B4GALNT3Q6L9W6 998 aa27.29■■□□□ 1.96
USP39-203ENST00000409470 ANKRD26Q9UPS8 1709 aa27.29■■□□□ 1.96
USP39-203ENST00000409470 SLIT1O75093 1534 aa27.29■■□□□ 1.96
USP39-203ENST00000409470 THEMISQ8N1K5 641 aaPredicted RBP27.29■■□□□ 1.96
USP39-203ENST00000409470 NGEFQ8N5V2 710 aa27.28■■□□□ 1.96
USP39-203ENST00000409470 TSHZ2Q9NRE2 1034 aa27.28■■□□□ 1.96
USP39-203ENST00000409470 ROBO2Q9HCK4 1378 aa27.28■■□□□ 1.96
USP39-203ENST00000409470 SLC26A8Q96RN1 970 aa27.28■■□□□ 1.96
USP39-203ENST00000409470 ARHGAP23Q9P227 1491 aa27.27■■□□□ 1.96
USP39-203ENST00000409470 PPIP5K1Q6PFW1 1433 aa27.27■■□□□ 1.96
USP39-203ENST00000409470 NUDT16Q96DE0 195 aaKnown RBP27.26■■□□□ 1.95
USP39-203ENST00000409470 KIF20BQ96Q89 1820 aa27.25■■□□□ 1.95
USP39-203ENST00000409470 DUSP27Q5VZP5 1158 aa27.25■■□□□ 1.95
USP39-203ENST00000409470 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.24■■□□□ 1.95
USP39-203ENST00000409470 RUNDC1Q96C34 613 aa27.24■■□□□ 1.95
USP39-203ENST00000409470 SLFN5Q08AF3 891 aa27.23■■□□□ 1.95
USP39-203ENST00000409470 CCDC61Q9Y6R9 512 aa27.22■■□□□ 1.95
USP39-203ENST00000409470 U2AF1L5P0DN76 240 aaPredicted RBP27.2■■□□□ 1.94
USP39-203ENST00000409470 U2AF1Q01081 240 aaKnown RBP eCLIP27.2■■□□□ 1.94
USP39-203ENST00000409470 CPSF1Q10570 1443 aaKnown RBP27.2■■□□□ 1.94
USP39-203ENST00000409470 TBX22Q9Y458 520 aa27.19■■□□□ 1.94
USP39-203ENST00000409470 EDC4Q6P2E9 1401 aaKnown RBP27.18■■□□□ 1.94
USP39-203ENST00000409470 PTPRUQ92729 1446 aa27.18■■□□□ 1.94
USP39-203ENST00000409470 RIMS1Q86UR5 1692 aaKnown RBP27.18■■□□□ 1.94
USP39-203ENST00000409470 NCKAP5LQ9HCH0 1330 aa27.18■■□□□ 1.94
USP39-203ENST00000409470 E9PSI1 815 aa27.17■■□□□ 1.94
USP39-203ENST00000409470 CCDC136Q96JN2 1154 aa27.17■■□□□ 1.94
USP39-203ENST00000409470 AMOTL2Q9Y2J4 779 aa27.17■■□□□ 1.94
USP39-203ENST00000409470 TCP11L2Q8N4U5 519 aa27.16■■□□□ 1.94
USP39-203ENST00000409470 CDC42BPGQ6DT37 1551 aa27.16■■□□□ 1.94
USP39-203ENST00000409470 TRMT2AQ8IZ69 625 aaKnown RBP27.16■■□□□ 1.94
USP39-203ENST00000409470 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.15■■□□□ 1.94
USP39-203ENST00000409470 ADGRB2O60241 1585 aa27.15■■□□□ 1.94
USP39-203ENST00000409470 NEUROD2Q15784 382 aa27.15■■□□□ 1.94
USP39-203ENST00000409470 WWC1Q8IX03 1113 aa27.15■■□□□ 1.94
USP39-203ENST00000409470 SPINK5Q9NQ38 1064 aaPredicted RBP27.14■■□□□ 1.94
USP39-203ENST00000409470 PRR36Q9H6K5 1346 aa27.14■■□□□ 1.94
USP39-203ENST00000409470 CEP170BQ9Y4F5 1589 aaPredicted RBP27.14■■□□□ 1.94
USP39-203ENST00000409470 U2SURPO15042 1029 aaKnown RBP27.14■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms