RNA–Protein interactions for RNA: ENST00000404354.3

SMC1B-202, Transcript of structural maintenance of chromosomes 1B, humanhuman

TSL 1 (best) BASIC

Gene SMC1B, Length 3,636 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1B-202ENST00000404354 ELL2O00472 640 aaPredicted RBP12.06□□□□□ -0.48
SMC1B-202ENST00000404354 RSPH4AQ5TD94 716 aa12.06□□□□□ -0.48
SMC1B-202ENST00000404354 ESPNB1AK53 854 aa12.06□□□□□ -0.48
SMC1B-202ENST00000404354 SYNJ2O15056 1496 aa12.05□□□□□ -0.48
SMC1B-202ENST00000404354 TRIM27P14373 513 aa12.05□□□□□ -0.48
SMC1B-202ENST00000404354 TNPO1Q92973 898 aaKnown RBP12.05□□□□□ -0.48
SMC1B-202ENST00000404354 PIK3C2GO75747 1445 aa12.05□□□□□ -0.48
SMC1B-202ENST00000404354 CLCN1P35523 988 aa12.05□□□□□ -0.48
SMC1B-202ENST00000404354 MRE11P49959 708 aa12.05□□□□□ -0.48
SMC1B-202ENST00000404354 SSH1Q8WYL5 1049 aa12.05□□□□□ -0.48
SMC1B-202ENST00000404354 NOB1Q9ULX3 412 aaKnown RBP12.05□□□□□ -0.48
SMC1B-202ENST00000404354 CD2BP2O95400 341 aaKnown RBP12.04□□□□□ -0.48
SMC1B-202ENST00000404354 SAMD9LQ8IVG5 1584 aa12.04□□□□□ -0.48
SMC1B-202ENST00000404354 TMEM57Q8N5G2 664 aa12.04□□□□□ -0.48
SMC1B-202ENST00000404354 GLIPR1L2Q4G1C9 344 aa12.04□□□□□ -0.48
SMC1B-202ENST00000404354 FBLN1P23142 703 aa12.03□□□□□ -0.48
SMC1B-202ENST00000404354 NSD3Q9BZ95 1437 aa12.03□□□□□ -0.48
SMC1B-202ENST00000404354 SCAF11Q99590 1463 aaKnown RBP12.03□□□□□ -0.48
SMC1B-202ENST00000404354 RBM10P98175 930 aaKnown RBP12.03□□□□□ -0.48
SMC1B-202ENST00000404354 ANKRD45Q5TZF3 282 aa12.02□□□□□ -0.48
SMC1B-202ENST00000404354 NUP160Q12769 1436 aa12.02□□□□□ -0.48
SMC1B-202ENST00000404354 SPAG9O60271 1321 aaKnown RBP12.02□□□□□ -0.49
SMC1B-202ENST00000404354 TPRNQ4KMQ1 711 aa12.02□□□□□ -0.49
SMC1B-202ENST00000404354 GGNBP2Q9H3C7 697 aa12.02□□□□□ -0.49
SMC1B-202ENST00000404354 CFAP53Q96M91 514 aa12.01□□□□□ -0.49
SMC1B-202ENST00000404354 APBB1O00213 710 aa12.01□□□□□ -0.49
SMC1B-202ENST00000404354 FOXD4L5Q5VV16 416 aaPredicted RBP12.01□□□□□ -0.49
SMC1B-202ENST00000404354 FOXD4L4Q8WXT5 416 aaPredicted RBP12.01□□□□□ -0.49
SMC1B-202ENST00000404354 CABP2Q9NPB3 220 aa12.01□□□□□ -0.49
SMC1B-202ENST00000404354 STK26Q9P289 416 aa12.01□□□□□ -0.49
SMC1B-202ENST00000404354 SSFA2P28290 1259 aa12□□□□□ -0.49
SMC1B-202ENST00000404354 CHAMP1Q96JM3 812 aa12□□□□□ -0.49
SMC1B-202ENST00000404354 MYO5CQ9NQX4 1742 aa12□□□□□ -0.49
SMC1B-202ENST00000404354 EFCAB2Q5VUJ9 269 aa12□□□□□ -0.49
SMC1B-202ENST00000404354 DDX11L8A8MPP1 907 aa11.99□□□□□ -0.49
SMC1B-202ENST00000404354 THUMPD2Q9BTF0 503 aaKnown RBP11.99□□□□□ -0.49
SMC1B-202ENST00000404354 ABCA8O94911 1581 aa11.99□□□□□ -0.49
SMC1B-202ENST00000404354 WDR63Q8IWG1 891 aa11.99□□□□□ -0.49
SMC1B-202ENST00000404354 ATF7IPQ6VMQ6 1270 aa11.98□□□□□ -0.49
SMC1B-202ENST00000404354 ZNF692Q9BU19 519 aaPredicted RBP11.98□□□□□ -0.49
SMC1B-202ENST00000404354 DDX49Q9Y6V7 483 aaKnown RBP11.98□□□□□ -0.49
SMC1B-202ENST00000404354 TRAPPC8Q9Y2L5 1435 aa11.98□□□□□ -0.49
SMC1B-202ENST00000404354 RIPK4P57078 832 aa11.97□□□□□ -0.49
SMC1B-202ENST00000404354 MPNDQ8N594 471 aa11.97□□□□□ -0.49
SMC1B-202ENST00000404354 KIAA1211Q6ZU35 1233 aa11.97□□□□□ -0.49
SMC1B-202ENST00000404354 GBP4Q96PP9 640 aa11.97□□□□□ -0.49
SMC1B-202ENST00000404354 DDX19BQ9UMR2 479 aa11.97□□□□□ -0.49
SMC1B-202ENST00000404354 UGGT1Q9NYU2 1555 aa11.96□□□□□ -0.49
SMC1B-202ENST00000404354 GAS2L2Q8NHY3 880 aa11.96□□□□□ -0.49
SMC1B-202ENST00000404354 CHD1O14646 1710 aa11.96□□□□□ -0.49
SMC1B-202ENST00000404354 CDC42BPBQ9Y5S2 1711 aa11.96□□□□□ -0.5
SMC1B-202ENST00000404354 ERVK-7P63135 1459 aa11.96□□□□□ -0.5
SMC1B-202ENST00000404354 ABCC2Q92887 1545 aa11.96□□□□□ -0.5
SMC1B-202ENST00000404354 GGT6Q6P531 493 aa11.96□□□□□ -0.5
SMC1B-202ENST00000404354 POLR3AO14802 1390 aaPredicted RBP11.95□□□□□ -0.5
SMC1B-202ENST00000404354 EIF2AK4Q9P2K8 1649 aaKnown RBP11.95□□□□□ -0.5
SMC1B-202ENST00000404354 FOXD4L6Q3SYB3 417 aaPredicted RBP11.95□□□□□ -0.5
SMC1B-202ENST00000404354 MCTP1Q6DN14 999 aa11.95□□□□□ -0.5
SMC1B-202ENST00000404354 FOXD4L3Q6VB84 417 aaPredicted RBP11.95□□□□□ -0.5
SMC1B-202ENST00000404354 TMPOP42166 694 aaKnown RBP11.95□□□□□ -0.5
SMC1B-202ENST00000404354 NASPP49321 788 aaPredicted RBP11.95□□□□□ -0.5
SMC1B-202ENST00000404354 CHD1LQ86WJ1 897 aa11.95□□□□□ -0.5
SMC1B-202ENST00000404354 NINLQ9Y2I6 1382 aa11.95□□□□□ -0.5
SMC1B-202ENST00000404354 FAM13BQ9NYF5 915 aa11.94□□□□□ -0.5
SMC1B-202ENST00000404354 ARHGEF5Q12774 1597 aa11.94□□□□□ -0.5
SMC1B-202ENST00000404354 SRPK2P78362 688 aaKnown RBP11.94□□□□□ -0.5
SMC1B-202ENST00000404354 PKP1Q13835 747 aa11.94□□□□□ -0.5
SMC1B-202ENST00000404354 CAVIN1Q6NZI2 390 aaKnown RBP11.94□□□□□ -0.5
SMC1B-202ENST00000404354 ERCC6L2Q5T890 1561 aa11.94□□□□□ -0.5
SMC1B-202ENST00000404354 NGEFQ8N5V2 710 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 ATAD2Q6PL18 1390 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 RTEL1-TNFRSF6BF6WH68 1400 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 RRP9O43818 475 aaKnown RBP11.93□□□□□ -0.5
SMC1B-202ENST00000404354 HMOX1P09601 288 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 TRIM35Q9UPQ4 493 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 R3HCC1Q9Y3T6 440 aaKnown RBP11.93□□□□□ -0.5
SMC1B-202ENST00000404354 TTC37Q6PGP7 1564 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 SYNMO15061 1565 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 NPC1L1Q9UHC9 1359 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 TBC1D9Q6ZT07 1266 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 SMC5Q8IY18 1101 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 ANP32BQ92688 251 aaKnown RBP11.93□□□□□ -0.5
SMC1B-202ENST00000404354 ZBTB40Q9NUA8 1239 aa11.93□□□□□ -0.5
SMC1B-202ENST00000404354 RBM27Q9P2N5 1060 aaKnown RBP11.92□□□□□ -0.5
SMC1B-202ENST00000404354 CLASP1Q7Z460 1538 aa11.92□□□□□ -0.5
SMC1B-202ENST00000404354 ATP10AO60312 1499 aa11.92□□□□□ -0.5
SMC1B-202ENST00000404354 HDAC1Q13547 482 aaPredicted RBP11.92□□□□□ -0.5
SMC1B-202ENST00000404354 NOL8Q76FK4 1167 aaKnown RBP11.92□□□□□ -0.5
SMC1B-202ENST00000404354 C16orf71Q8IYS4 520 aaPredicted RBP11.92□□□□□ -0.5
SMC1B-202ENST00000404354 KIF2CQ99661 725 aa11.92□□□□□ -0.5
SMC1B-202ENST00000404354 PHF23Q9BUL5 403 aaPredicted RBP11.92□□□□□ -0.5
SMC1B-202ENST00000404354 MSNP26038 577 aaKnown RBP11.91□□□□□ -0.5
SMC1B-202ENST00000404354 XPCQ01831 940 aaPredicted RBP11.91□□□□□ -0.5
SMC1B-202ENST00000404354 RAB3GAP1Q15042 981 aa11.91□□□□□ -0.5
SMC1B-202ENST00000404354 NUCB1Q02818 461 aa11.91□□□□□ -0.5
SMC1B-202ENST00000404354 RNF214Q8ND24 703 aa11.91□□□□□ -0.5
SMC1B-202ENST00000404354 MADDQ8WXG6 1647 aa11.91□□□□□ -0.5
SMC1B-202ENST00000404354 K7ELQ4 463 aaPredicted RBP11.91□□□□□ -0.5
SMC1B-202ENST00000404354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.91□□□□□ -0.5
SMC1B-202ENST00000404354 TSPYL6Q8N831 410 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms