RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 TESK2Q96S53 571 aa17.28■□□□□ 0.36
LINC00339-201ENST00000404210 SAFB2Q14151 953 aaKnown RBP eCLIP17.27■□□□□ 0.36
LINC00339-201ENST00000404210 SBNO2Q9Y2G9 1366 aa17.27■□□□□ 0.35
LINC00339-201ENST00000404210 HIRIP3Q9BW71 556 aaPredicted RBP17.26■□□□□ 0.35
LINC00339-201ENST00000404210 QRICH2Q9H0J4 1663 aa17.24■□□□□ 0.35
LINC00339-201ENST00000404210 LTBP4Q8N2S1 1624 aa17.24■□□□□ 0.35
LINC00339-201ENST00000404210 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.24■□□□□ 0.35
LINC00339-201ENST00000404210 MINK1Q8N4C8 1332 aaPredicted RBP17.23■□□□□ 0.35
LINC00339-201ENST00000404210 LRRC7Q96NW7 1537 aa17.23■□□□□ 0.35
LINC00339-201ENST00000404210 TMF1P82094 1093 aa17.23■□□□□ 0.35
LINC00339-201ENST00000404210 RBM33Q96EV2 1170 aaKnown RBP17.23■□□□□ 0.35
LINC00339-201ENST00000404210 TMEM94Q12767 1356 aa17.23■□□□□ 0.35
LINC00339-201ENST00000404210 PUS7Q96PZ0 661 aaKnown RBP17.22■□□□□ 0.35
LINC00339-201ENST00000404210 C19orf44Q9H6X5 657 aa17.22■□□□□ 0.35
LINC00339-201ENST00000404210 EVC2Q86UK5 1308 aa17.21■□□□□ 0.35
LINC00339-201ENST00000404210 WASLO00401 505 aaPredicted RBP17.21■□□□□ 0.35
LINC00339-201ENST00000404210 C14orf37Q86TY3 774 aa17.21■□□□□ 0.35
LINC00339-201ENST00000404210 CDCA8Q53HL2 280 aa17.2■□□□□ 0.34
LINC00339-201ENST00000404210 CDK19Q9BWU1 502 aa17.2■□□□□ 0.34
LINC00339-201ENST00000404210 ADGRL3Q9HAR2 1447 aa17.2■□□□□ 0.34
LINC00339-201ENST00000404210 XIRP1Q702N8 1843 aaKnown RBP17.19■□□□□ 0.34
LINC00339-201ENST00000404210 ZNF316A6NFI3 1004 aaPredicted RBP17.18■□□□□ 0.34
LINC00339-201ENST00000404210 C11orf95C9JLR9 678 aaPredicted RBP17.18■□□□□ 0.34
LINC00339-201ENST00000404210 ADGRB2O60241 1585 aa17.18■□□□□ 0.34
LINC00339-201ENST00000404210 MSH6P52701 1360 aa17.16■□□□□ 0.34
LINC00339-201ENST00000404210 NALCNQ8IZF0 1738 aa17.16■□□□□ 0.34
LINC00339-201ENST00000404210 DISP3Q9P2K9 1392 aa17.15■□□□□ 0.34
LINC00339-201ENST00000404210 ATF3P18847 181 aa17.15■□□□□ 0.34
LINC00339-201ENST00000404210 SRPK2P78362 688 aaKnown RBP17.15■□□□□ 0.34
LINC00339-201ENST00000404210 CADPS2Q86UW7 1296 aa17.15■□□□□ 0.34
LINC00339-201ENST00000404210 DCCP43146 1447 aa17.14■□□□□ 0.33
LINC00339-201ENST00000404210 CABP2Q9NPB3 220 aa17.14■□□□□ 0.33
LINC00339-201ENST00000404210 TULP4Q9NRJ4 1543 aa17.14■□□□□ 0.33
LINC00339-201ENST00000404210 CDC42BPGQ6DT37 1551 aa17.13■□□□□ 0.33
LINC00339-201ENST00000404210 NUDT16Q96DE0 195 aaKnown RBP17.12■□□□□ 0.33
LINC00339-201ENST00000404210 KIF7Q2M1P5 1343 aa17.12■□□□□ 0.33
LINC00339-201ENST00000404210 CERKQ8TCT0 537 aa17.11■□□□□ 0.33
LINC00339-201ENST00000404210 CCDC61Q9Y6R9 512 aa17.11■□□□□ 0.33
LINC00339-201ENST00000404210 ATAD2Q6PL18 1390 aa17.11■□□□□ 0.33
LINC00339-201ENST00000404210 FMN2Q9NZ56 1722 aa17.1■□□□□ 0.33
LINC00339-201ENST00000404210 WASHC2AQ641Q2 1341 aa17.1■□□□□ 0.33
LINC00339-201ENST00000404210 CCDC7Q96M83 1385 aa17.1■□□□□ 0.33
LINC00339-201ENST00000404210 IQSEC2Q5JU85 1478 aa17.1■□□□□ 0.33
LINC00339-201ENST00000404210 ANKARQ7Z5J8 1434 aa17.09■□□□□ 0.33
LINC00339-201ENST00000404210 PRR36Q9H6K5 1346 aa17.08■□□□□ 0.32
LINC00339-201ENST00000404210 NUTM2FA1L443 756 aa17.08■□□□□ 0.32
LINC00339-201ENST00000404210 POLR3GLQ9BT43 218 aa17.08■□□□□ 0.32
LINC00339-201ENST00000404210 PLEKHG3A1L390 1219 aa17.07■□□□□ 0.32
LINC00339-201ENST00000404210 SLAIN2Q9P270 581 aa17.07■□□□□ 0.32
LINC00339-201ENST00000404210 MST1RQ04912 1400 aa17.06■□□□□ 0.32
LINC00339-201ENST00000404210 CABP1Q9NZU7 370 aa17.06■□□□□ 0.32
LINC00339-201ENST00000404210 ATP7BP35670 1465 aa17.05■□□□□ 0.32
LINC00339-201ENST00000404210 C1orf167Q5SNV9 1468 aa17.05■□□□□ 0.32
LINC00339-201ENST00000404210 RGPD8O14715 1765 aaPredicted RBP17.05■□□□□ 0.32
LINC00339-201ENST00000404210 NINLQ9Y2I6 1382 aa17.05■□□□□ 0.32
LINC00339-201ENST00000404210 TOM1O60784 492 aa17.05■□□□□ 0.32
LINC00339-201ENST00000404210 TMC1Q8TDI8 760 aa17.05■□□□□ 0.32
LINC00339-201ENST00000404210 SLC12A5Q9H2X9 1139 aa17.05■□□□□ 0.32
LINC00339-201ENST00000404210 USP32Q8NFA0 1604 aa17.05■□□□□ 0.32
LINC00339-201ENST00000404210 ESCO1Q5FWF5 840 aa17.04■□□□□ 0.32
LINC00339-201ENST00000404210 PPIP5K1Q6PFW1 1433 aa17.03■□□□□ 0.32
LINC00339-201ENST00000404210 ITSN1Q15811 1721 aa17.02■□□□□ 0.32
LINC00339-201ENST00000404210 ORAI2Q96SN7 254 aa17.02■□□□□ 0.32
LINC00339-201ENST00000404210 ZNF692Q9BU19 519 aaPredicted RBP17.02■□□□□ 0.32
LINC00339-201ENST00000404210 PHF8Q9UPP1 1060 aa17.02■□□□□ 0.32
LINC00339-201ENST00000404210 TERF2IPQ9NYB0 399 aa17.01■□□□□ 0.31
LINC00339-201ENST00000404210 TOPAZ1Q8N9V7 1692 aa17.01■□□□□ 0.31
LINC00339-201ENST00000404210 PMFBP1Q8TBY8 1022 aa17■□□□□ 0.31
LINC00339-201ENST00000404210 ACEP12821 1306 aa16.99■□□□□ 0.31
LINC00339-201ENST00000404210 DDX10Q13206 875 aaKnown RBP16.99■□□□□ 0.31
LINC00339-201ENST00000404210 HDGFL2Q7Z4V5 671 aaPredicted RBP16.99■□□□□ 0.31
LINC00339-201ENST00000404210 NGDNQ8NEJ9 315 aaKnown RBP16.99■□□□□ 0.31
LINC00339-201ENST00000404210 PANK3Q9H999 370 aa16.99■□□□□ 0.31
LINC00339-201ENST00000404210 UBAP1LF5GYI3 381 aa16.98■□□□□ 0.31
LINC00339-201ENST00000404210 BRINP3Q76B58 766 aa16.98■□□□□ 0.31
LINC00339-201ENST00000404210 POLR3AO14802 1390 aaPredicted RBP16.98■□□□□ 0.31
LINC00339-201ENST00000404210 MYOM1P52179 1685 aa16.97■□□□□ 0.31
LINC00339-201ENST00000404210 CPSF1Q10570 1443 aaKnown RBP16.97■□□□□ 0.31
LINC00339-201ENST00000404210 ANKRD36BQ8N2N9 1353 aa16.97■□□□□ 0.31
LINC00339-201ENST00000404210 CD163L1Q9NR16 1453 aa16.96■□□□□ 0.31
LINC00339-201ENST00000404210 KIF1AQ12756 1690 aa16.96■□□□□ 0.31
LINC00339-201ENST00000404210 FOXO3O43524 673 aa16.95■□□□□ 0.3
LINC00339-201ENST00000404210 PSME1Q06323 249 aa16.95■□□□□ 0.3
LINC00339-201ENST00000404210 A0A1W2PP64 1363 aa16.94■□□□□ 0.3
LINC00339-201ENST00000404210 PER1O15534 1290 aaPredicted RBP16.94■□□□□ 0.3
LINC00339-201ENST00000404210 AKAP12Q02952 1782 aa16.94■□□□□ 0.3
LINC00339-201ENST00000404210 BRD4O60885 1362 aaPredicted RBP16.93■□□□□ 0.3
LINC00339-201ENST00000404210 KTN1Q86UP2 1357 aaKnown RBP16.93■□□□□ 0.3
LINC00339-201ENST00000404210 KRT28Q7Z3Y7 464 aa16.93■□□□□ 0.3
LINC00339-201ENST00000404210 CARD14Q9BXL6 1004 aa16.93■□□□□ 0.3
LINC00339-201ENST00000404210 NPHP3Q7Z494 1330 aa16.93■□□□□ 0.3
LINC00339-201ENST00000404210 PIP4K2BP78356 416 aa16.91■□□□□ 0.3
LINC00339-201ENST00000404210 KNSTRNQ9Y448 316 aa16.91■□□□□ 0.3
LINC00339-201ENST00000404210 USP6P35125 1406 aa16.9■□□□□ 0.3
LINC00339-201ENST00000404210 ROBO1Q9Y6N7 1651 aa16.9■□□□□ 0.3
LINC00339-201ENST00000404210 EDC4Q6P2E9 1401 aaKnown RBP16.89■□□□□ 0.29
LINC00339-201ENST00000404210 SSH2Q76I76 1423 aa16.89■□□□□ 0.29
LINC00339-201ENST00000404210 MON2Q7Z3U7 1717 aa16.89■□□□□ 0.29
LINC00339-201ENST00000404210 SOS2Q07890 1332 aaPredicted RBP16.89■□□□□ 0.29
LINC00339-201ENST00000404210 TTC21BQ7Z4L5 1316 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 445.6 ms