RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 TNNT2P45379 298 aaPredicted RBP12.67□□□□□ -0.38
PTCHD4-202ENST00000398738 SLC24A3Q9HC58 644 aa12.67□□□□□ -0.38
PTCHD4-202ENST00000398738 CAMSAP2Q08AD1 1489 aa12.67□□□□□ -0.38
PTCHD4-202ENST00000398738 PLEKHD1A6NEE1 506 aa12.67□□□□□ -0.38
PTCHD4-202ENST00000398738 PANK2Q9BZ23 570 aa12.67□□□□□ -0.38
PTCHD4-202ENST00000398738 BRPF1P55201 1214 aaPredicted RBP12.66□□□□□ -0.38
PTCHD4-202ENST00000398738 TESK2Q96S53 571 aa12.66□□□□□ -0.38
PTCHD4-202ENST00000398738 RRP7AQ9Y3A4 280 aaKnown RBP12.66□□□□□ -0.38
PTCHD4-202ENST00000398738 LARP6Q9BRS8 491 aaKnown RBP12.65□□□□□ -0.38
PTCHD4-202ENST00000398738 SLFN5Q08AF3 891 aa12.65□□□□□ -0.38
PTCHD4-202ENST00000398738 UPF2Q9HAU5 1272 aaKnown RBP12.64□□□□□ -0.39
PTCHD4-202ENST00000398738 USP19O94966 1318 aa12.64□□□□□ -0.39
PTCHD4-202ENST00000398738 DNMT1P26358 1616 aaKnown RBP12.64□□□□□ -0.39
PTCHD4-202ENST00000398738 TNNQ9UQP3 1299 aa12.64□□□□□ -0.39
PTCHD4-202ENST00000398738 KIF14Q15058 1648 aa12.63□□□□□ -0.39
PTCHD4-202ENST00000398738 UHRF1BP1Q6BDS2 1440 aa12.63□□□□□ -0.39
PTCHD4-202ENST00000398738 PNNQ9H307 717 aaKnown RBP12.63□□□□□ -0.39
PTCHD4-202ENST00000398738 NUP153P49790 1475 aaKnown RBP12.62□□□□□ -0.39
PTCHD4-202ENST00000398738 FXR2P51116 673 aaKnown RBP eCLIP12.62□□□□□ -0.39
PTCHD4-202ENST00000398738 DISP1Q96F81 1524 aa12.62□□□□□ -0.39
PTCHD4-202ENST00000398738 CCDC144AA2RUR9 1427 aa12.62□□□□□ -0.39
PTCHD4-202ENST00000398738 GOLGA6L3A6NEY3 463 aa12.62□□□□□ -0.39
PTCHD4-202ENST00000398738 CHRDL2Q6WN34 429 aa12.62□□□□□ -0.39
PTCHD4-202ENST00000398738 POLR1AO95602 1720 aaPredicted RBP12.62□□□□□ -0.39
PTCHD4-202ENST00000398738 KIAA0556O60303 1618 aa12.61□□□□□ -0.39
PTCHD4-202ENST00000398738 XRCC6P12956 609 aaKnown RBP eCLIP12.61□□□□□ -0.399e-7■■□□□ 13
PTCHD4-202ENST00000398738 L1TD1Q5T7N2 865 aaKnown RBP12.61□□□□□ -0.39
PTCHD4-202ENST00000398738 ZRANB1Q9UGI0 708 aa12.61□□□□□ -0.39
PTCHD4-202ENST00000398738 GPATCH8Q9UKJ3 1502 aaKnown RBP12.61□□□□□ -0.39
PTCHD4-202ENST00000398738 ZC3H15Q8WU90 426 aaKnown RBP12.61□□□□□ -0.39
PTCHD4-202ENST00000398738 TBC1D2Q9BYX2 928 aa12.6□□□□□ -0.39
PTCHD4-202ENST00000398738 PLB1Q6P1J6 1458 aa12.6□□□□□ -0.39
PTCHD4-202ENST00000398738 MLLT3P42568 568 aaPredicted RBP12.6□□□□□ -0.39
PTCHD4-202ENST00000398738 MFAP1P55081 439 aaKnown RBP12.6□□□□□ -0.39
PTCHD4-202ENST00000398738 BLMP54132 1417 aaPredicted RBP12.6□□□□□ -0.39
PTCHD4-202ENST00000398738 DPY19L2Q6NUT2 758 aa12.6□□□□□ -0.39
PTCHD4-202ENST00000398738 TROQ12816 1431 aaPredicted RBP12.59□□□□□ -0.39
PTCHD4-202ENST00000398738 C9orf84Q5VXU9 1444 aa12.59□□□□□ -0.39
PTCHD4-202ENST00000398738 ERBINQ96RT1 1412 aa12.59□□□□□ -0.39
PTCHD4-202ENST00000398738 CENPJQ9HC77 1338 aaPredicted RBP12.59□□□□□ -0.39
PTCHD4-202ENST00000398738 E2F4Q16254 413 aa12.59□□□□□ -0.39
PTCHD4-202ENST00000398738 ZNF579Q8NAF0 562 aaKnown RBP12.58□□□□□ -0.39
PTCHD4-202ENST00000398738 GPBP1L1Q9HC44 474 aaPredicted RBP12.58□□□□□ -0.4
PTCHD4-202ENST00000398738 MS4A3Q96HJ5 214 aa12.57□□□□□ -0.4
PTCHD4-202ENST00000398738 JPH4Q96JJ6 628 aa12.57□□□□□ -0.4
PTCHD4-202ENST00000398738 PRAG1Q86YV5 1406 aa12.57□□□□□ -0.4
PTCHD4-202ENST00000398738 PKNOX2Q96KN3 472 aa12.57□□□□□ -0.4
PTCHD4-202ENST00000398738 PDZRN3Q9UPQ7 1066 aa12.57□□□□□ -0.4
PTCHD4-202ENST00000398738 PCDHB15Q9Y5E8 787 aa12.57□□□□□ -0.4
PTCHD4-202ENST00000398738 RBM26Q5T8P6 1007 aaKnown RBP12.56□□□□□ -0.4
PTCHD4-202ENST00000398738 CD44P16070 742 aaKnown RBP12.56□□□□□ -0.4
PTCHD4-202ENST00000398738 ZMYM4Q5VZL5 1548 aa12.56□□□□□ -0.4
PTCHD4-202ENST00000398738 E9PSI1 815 aa12.56□□□□□ -0.4
PTCHD4-202ENST00000398738 HSP90AA2PQ14568 343 aaPredicted RBP12.56□□□□□ -0.4
PTCHD4-202ENST00000398738 HSP90AA1P07900 732 aaKnown RBP12.55□□□□□ -0.4
PTCHD4-202ENST00000398738 ZNF521Q96K83 1311 aa12.55□□□□□ -0.4
PTCHD4-202ENST00000398738 RLBP1P12271 317 aa12.55□□□□□ -0.4
PTCHD4-202ENST00000398738 ADCY10Q96PN6 1610 aa12.55□□□□□ -0.4
PTCHD4-202ENST00000398738 TRAK2O60296 914 aa12.54□□□□□ -0.4
PTCHD4-202ENST00000398738 MCM4P33991 863 aa12.54□□□□□ -0.4
PTCHD4-202ENST00000398738 GLIPR1L2Q4G1C9 344 aa12.54□□□□□ -0.4
PTCHD4-202ENST00000398738 CGNL1Q0VF96 1302 aa12.54□□□□□ -0.4
PTCHD4-202ENST00000398738 MAPK8IP3Q9UPT6 1336 aa12.54□□□□□ -0.4
PTCHD4-202ENST00000398738 RYDENQ9NUL5 291 aaKnown RBP12.54□□□□□ -0.4
PTCHD4-202ENST00000398738 TMEM106CQ9BVX2 250 aa12.53□□□□□ -0.4
PTCHD4-202ENST00000398738 ANTXR1Q9H6X2 564 aa12.53□□□□□ -0.4
PTCHD4-202ENST00000398738 UHRF1BP1LA0JNW5 1464 aa12.53□□□□□ -0.4
PTCHD4-202ENST00000398738 ZMYND15Q9H091 742 aa12.52□□□□□ -0.41
PTCHD4-202ENST00000398738 TBC1D32Q96NH3 1257 aa12.52□□□□□ -0.41
PTCHD4-202ENST00000398738 MYH16Q9H6N6 1097 aa12.52□□□□□ -0.41
PTCHD4-202ENST00000398738 MAGI2Q86UL8 1455 aa12.51□□□□□ -0.41
PTCHD4-202ENST00000398738 COL17A1Q9UMD9 1497 aaPredicted RBP12.51□□□□□ -0.41
PTCHD4-202ENST00000398738 WWC1Q8IX03 1113 aa12.51□□□□□ -0.41
PTCHD4-202ENST00000398738 TRIM44Q96DX7 344 aaPredicted RBP12.5□□□□□ -0.41
PTCHD4-202ENST00000398738 NKTRP30414 1462 aaKnown RBP12.5□□□□□ -0.41
PTCHD4-202ENST00000398738 ABCA8O94911 1581 aa12.5□□□□□ -0.41
PTCHD4-202ENST00000398738 EIF3AQ14152 1382 aaKnown RBP12.5□□□□□ -0.41
PTCHD4-202ENST00000398738 C22orf23Q9BZE7 217 aa12.5□□□□□ -0.41
PTCHD4-202ENST00000398738 ARHGEF12Q9NZN5 1544 aa12.5□□□□□ -0.41
PTCHD4-202ENST00000398738 PDE3AQ14432 1141 aa12.5□□□□□ -0.41
PTCHD4-202ENST00000398738 CARMIL2Q6F5E8 1435 aa12.49□□□□□ -0.41
PTCHD4-202ENST00000398738 FTSJ3Q8IY81 847 aaKnown RBP12.49□□□□□ -0.41
PTCHD4-202ENST00000398738 PMFBP1Q8TBY8 1022 aa12.49□□□□□ -0.41
PTCHD4-202ENST00000398738 PLEKHH2Q8IVE3 1493 aa12.49□□□□□ -0.41
PTCHD4-202ENST00000398738 TRMT2AQ8IZ69 625 aaKnown RBP12.49□□□□□ -0.41
PTCHD4-202ENST00000398738 TMEM132AQ24JP5 1023 aa12.48□□□□□ -0.41
PTCHD4-202ENST00000398738 ARID3AQ99856 593 aa12.48□□□□□ -0.41
PTCHD4-202ENST00000398738 A2MP01023 1474 aa12.48□□□□□ -0.41
PTCHD4-202ENST00000398738 RWDD1Q9H446 243 aaPredicted RBP12.48□□□□□ -0.41
PTCHD4-202ENST00000398738 ADGRL2O95490 1459 aa12.48□□□□□ -0.41
PTCHD4-202ENST00000398738 RARSP54136 660 aaKnown RBP12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 NLRP6P59044 892 aa12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 EVX2Q03828 476 aa12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 CHMP5Q9NZZ3 219 aa12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 TESPA1A2RU30 521 aaPredicted RBP12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 CDCA8Q53HL2 280 aa12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 TCP11L2Q8N4U5 519 aa12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 HSCBQ8IWL3 235 aa12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 GRPEL1Q9HAV7 217 aa12.47□□□□□ -0.41
PTCHD4-202ENST00000398738 ABCC2Q92887 1545 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms