RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DDX19BQ9UMR2 479 aa8.68□□□□□ -1.02
UPF2-203ENST00000397053 COG6Q9Y2V7 657 aa8.68□□□□□ -1.02
UPF2-203ENST00000397053 KIF6Q6ZMV9 814 aa8.68□□□□□ -1.02
UPF2-203ENST00000397053 IBSPP21815 317 aaPredicted RBP8.68□□□□□ -1.02
UPF2-203ENST00000397053 GNL3LQ9NVN8 582 aaKnown RBP8.68□□□□□ -1.02
UPF2-203ENST00000397053 PAXIP1Q6ZW49 1069 aaPredicted RBP8.67□□□□□ -1.02
UPF2-203ENST00000397053 APAF1O14727 1248 aa8.67□□□□□ -1.02
UPF2-203ENST00000397053 ESCO1Q5FWF5 840 aa8.67□□□□□ -1.02
UPF2-203ENST00000397053 ROCK1Q13464 1354 aa8.67□□□□□ -1.02
UPF2-203ENST00000397053 SASS6Q6UVJ0 657 aa8.67□□□□□ -1.02
UPF2-203ENST00000397053 CCDC97Q96F63 343 aaPredicted RBP8.67□□□□□ -1.02
UPF2-203ENST00000397053 RBM19Q9Y4C8 960 aaKnown RBP8.67□□□□□ -1.02
UPF2-203ENST00000397053 MPHOSPH10O00566 681 aaKnown RBP8.67□□□□□ -1.02
UPF2-203ENST00000397053 UBTFL1P0CB47 393 aaPredicted RBP8.67□□□□□ -1.02
UPF2-203ENST00000397053 PPM1FP49593 454 aaPredicted RBP8.67□□□□□ -1.02
UPF2-203ENST00000397053 SDF4Q9BRK5 362 aa8.67□□□□□ -1.02
UPF2-203ENST00000397053 GNAI1P63096 354 aa8.66□□□□□ -1.02
UPF2-203ENST00000397053 PIP4K2BP78356 416 aa8.66□□□□□ -1.02
UPF2-203ENST00000397053 SKOR2Q2VWA4 1001 aaPredicted RBP8.66□□□□□ -1.02
UPF2-203ENST00000397053 ZSCAN29Q8IWY8 852 aaPredicted RBP8.66□□□□□ -1.02
UPF2-203ENST00000397053 CLASRPQ8N2M8 674 aaKnown RBP8.66□□□□□ -1.02
UPF2-203ENST00000397053 ABTB2Q8N961 1025 aa8.66□□□□□ -1.02
UPF2-203ENST00000397053 KANK4Q5T7N3 995 aaPredicted RBP8.66□□□□□ -1.02
UPF2-203ENST00000397053 CNNM1Q9NRU3 951 aa8.66□□□□□ -1.02
UPF2-203ENST00000397053 HMOX1P09601 288 aa8.65□□□□□ -1.02
UPF2-203ENST00000397053 TXLNAP40222 546 aa8.65□□□□□ -1.02
UPF2-203ENST00000397053 AK7Q96M32 723 aa8.65□□□□□ -1.02
UPF2-203ENST00000397053 FSD1Q9BTV5 496 aa8.65□□□□□ -1.02
UPF2-203ENST00000397053 KDM4AO75164 1064 aa8.65□□□□□ -1.02
UPF2-203ENST00000397053 OLFM4Q6UX06 510 aa8.65□□□□□ -1.02
UPF2-203ENST00000397053 PTPRGP23470 1445 aa8.65□□□□□ -1.02
UPF2-203ENST00000397053 NEFHP12036 1026 aa8.65□□□□□ -1.02
UPF2-203ENST00000397053 HMGB2P26583 209 aaKnown RBP8.65□□□□□ -1.02
UPF2-203ENST00000397053 DZIP1LQ8IYY4 767 aaKnown RBP8.65□□□□□ -1.02
UPF2-203ENST00000397053 TOM1L2Q6ZVM7 507 aa8.65□□□□□ -1.03
UPF2-203ENST00000397053 PLEKHO1Q53GL0 409 aaPredicted RBP8.64□□□□□ -1.03
UPF2-203ENST00000397053 DDX54Q8TDD1 881 aaKnown RBP8.64□□□□□ -1.03
UPF2-203ENST00000397053 MYBBP1AQ9BQG0 1328 aaKnown RBP8.64□□□□□ -1.03
UPF2-203ENST00000397053 TATP17735 454 aaPredicted RBP8.64□□□□□ -1.03
UPF2-203ENST00000397053 CENPQQ7L2Z9 268 aaPredicted RBP8.64□□□□□ -1.03
UPF2-203ENST00000397053 TMOD2Q9NZR1 351 aa8.64□□□□□ -1.03
UPF2-203ENST00000397053 TXNDC2Q86VQ3 553 aa8.64□□□□□ -1.03
UPF2-203ENST00000397053 TMEM87AQ8NBN3 555 aa8.64□□□□□ -1.03
UPF2-203ENST00000397053 MYO6Q9UM54 1294 aa8.64□□□□□ -1.03
UPF2-203ENST00000397053 KIF15Q9NS87 1388 aa8.64□□□□□ -1.03
UPF2-203ENST00000397053 MNS1Q8NEH6 495 aa8.64□□□□□ -1.03
UPF2-203ENST00000397053 ZHX3Q9H4I2 956 aa8.64□□□□□ -1.03
UPF2-203ENST00000397053 ACBD3Q9H3P7 528 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 CCDC18Q5T9S5 1454 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 HSP90B2PQ58FF3 399 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 CECR2Q9BXF3 1484 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 NEBLO76041 1014 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 INTS3Q68E01 1043 aaKnown RBP8.63□□□□□ -1.03
UPF2-203ENST00000397053 PRDM11Q9NQV5 511 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 FAM161AQ3B820 660 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 PDILTQ8N807 584 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 DNAJC2Q99543 621 aaKnown RBP8.63□□□□□ -1.03
UPF2-203ENST00000397053 MPHOSPH8Q99549 860 aa8.63□□□□□ -1.03
UPF2-203ENST00000397053 ZRSR2Q15696 482 aaKnown RBP8.62□□□□□ -1.03
UPF2-203ENST00000397053 CAGE1Q8TC20 777 aa8.62□□□□□ -1.03
UPF2-203ENST00000397053 IPO9Q96P70 1041 aaKnown RBP8.62□□□□□ -1.03
UPF2-203ENST00000397053 SURF6O75683 361 aaKnown RBP8.62□□□□□ -1.03
UPF2-203ENST00000397053 DHX57Q6P158 1386 aaKnown RBP8.62□□□□□ -1.03
UPF2-203ENST00000397053 PSMA5P28066 241 aa8.62□□□□□ -1.03
UPF2-203ENST00000397053 DCTN1Q14203 1278 aa8.62□□□□□ -1.03
UPF2-203ENST00000397053 GGNBP2Q9H3C7 697 aa8.62□□□□□ -1.03
UPF2-203ENST00000397053 RAB3GAP2Q9H2M9 1393 aa8.62□□□□□ -1.03
UPF2-203ENST00000397053 TEX35Q5T0J7 233 aa8.62□□□□□ -1.03
UPF2-203ENST00000397053 NACAP1Q9BZK3 213 aa8.62□□□□□ -1.03
UPF2-203ENST00000397053 SOGA3Q5TF21 947 aa8.62□□□□□ -1.03
UPF2-203ENST00000397053 MAGEC2Q9UBF1 373 aaPredicted RBP8.62□□□□□ -1.03
UPF2-203ENST00000397053 CCDC158Q5M9N0 1113 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 NAT10Q9H0A0 1025 aaKnown RBP8.61□□□□□ -1.03
UPF2-203ENST00000397053 GNAI3P08754 354 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 CHMP4BP1P59074 171 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 TTLL5Q6EMB2 1281 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 CALRP27797 417 aaKnown RBP8.61□□□□□ -1.03
UPF2-203ENST00000397053 CCDC191Q8NCU4 936 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 GAS2L2Q8NHY3 880 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 MYCNP04198 464 aaPredicted RBP8.61□□□□□ -1.03
UPF2-203ENST00000397053 DESP17661 470 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 FILIP1LQ4L180 1135 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 LNPKQ9C0E8 428 aa8.61□□□□□ -1.03
UPF2-203ENST00000397053 ANKRD62A6NC57 917 aa8.6□□□□□ -1.03
UPF2-203ENST00000397053 SPDYE4A6NLX3 237 aa8.6□□□□□ -1.03
UPF2-203ENST00000397053 CABP4P57796 275 aa8.6□□□□□ -1.03
UPF2-203ENST00000397053 ARGLU1Q9NWB6 273 aaPredicted RBP8.6□□□□□ -1.03
UPF2-203ENST00000397053 CHMP5Q9NZZ3 219 aa8.6□□□□□ -1.03
UPF2-203ENST00000397053 WDR78Q5VTH9 848 aa8.6□□□□□ -1.03
UPF2-203ENST00000397053 CCDC30Q5VVM6 783 aa8.6□□□□□ -1.03
UPF2-203ENST00000397053 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.6□□□□□ -1.03
UPF2-203ENST00000397053 CNTROBQ8N137 903 aa8.6□□□□□ -1.03
UPF2-203ENST00000397053 THEMISQ8N1K5 641 aaPredicted RBP8.6□□□□□ -1.03
UPF2-203ENST00000397053 TRIM21P19474 475 aaKnown RBP8.59□□□□□ -1.03
UPF2-203ENST00000397053 PIP4K2AP48426 406 aaPredicted RBP8.59□□□□□ -1.03
UPF2-203ENST00000397053 IFT57Q9NWB7 429 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 BRPF1P55201 1214 aaPredicted RBP8.59□□□□□ -1.03
UPF2-203ENST00000397053 TTLL12Q14166 644 aaPredicted RBP8.59□□□□□ -1.03
UPF2-203ENST00000397053 TTC39AQ5SRH9 613 aa8.59□□□□□ -1.03
UPF2-203ENST00000397053 SSBP05455 408 aaKnown RBP eCLIP8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms