RNA–Protein interactions for RNA: ENST00000395906.7

CDRT1-204, CMT1A duplicated region transcript 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CDRT1, Length 2,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-204ENST00000395906 ADGBQ8N7X0 1667 aa12.15□□□□□ -0.46
CDRT1-204ENST00000395906 SHANK2Q9UPX8 1470 aa12.15□□□□□ -0.46
CDRT1-204ENST00000395906 E9PSI1 815 aa12.15□□□□□ -0.47
CDRT1-204ENST00000395906 PZPP20742 1482 aa12.14□□□□□ -0.47
CDRT1-204ENST00000395906 AMER1Q5JTC6 1135 aaPredicted RBP12.14□□□□□ -0.47
CDRT1-204ENST00000395906 GGT6Q6P531 493 aa12.14□□□□□ -0.47
CDRT1-204ENST00000395906 HOMEZQ8IX15 550 aa12.14□□□□□ -0.47
CDRT1-204ENST00000395906 SENP3-EIF4A1A0A087X0R7 540 aa12.14□□□□□ -0.47
CDRT1-204ENST00000395906 PLIN1O60240 522 aa12.14□□□□□ -0.47
CDRT1-204ENST00000395906 ILDR1Q86SU0 546 aaPredicted RBP12.14□□□□□ -0.47
CDRT1-204ENST00000395906 NASPP49321 788 aaPredicted RBP12.13□□□□□ -0.47
CDRT1-204ENST00000395906 TBC1D2Q9BYX2 928 aa12.13□□□□□ -0.47
CDRT1-204ENST00000395906 DHX29Q7Z478 1369 aaKnown RBP12.13□□□□□ -0.47
CDRT1-204ENST00000395906 XPCQ01831 940 aaPredicted RBP12.13□□□□□ -0.47
CDRT1-204ENST00000395906 L3MBTL2Q969R5 705 aa12.13□□□□□ -0.47
CDRT1-204ENST00000395906 CLGNO14967 610 aa12.12□□□□□ -0.47
CDRT1-204ENST00000395906 KIF7Q2M1P5 1343 aa12.12□□□□□ -0.47
CDRT1-204ENST00000395906 MCM5P33992 734 aa12.12□□□□□ -0.47
CDRT1-204ENST00000395906 NLRP1Q9C000 1473 aa12.11□□□□□ -0.47
CDRT1-204ENST00000395906 ANKRD30BQ9BXX2 1392 aa12.11□□□□□ -0.47
CDRT1-204ENST00000395906 ATP2B3Q16720 1220 aa12.11□□□□□ -0.47
CDRT1-204ENST00000395906 SKOR2Q2VWA4 1001 aaPredicted RBP12.11□□□□□ -0.47
CDRT1-204ENST00000395906 RGL3Q3MIN7 710 aa12.11□□□□□ -0.47
CDRT1-204ENST00000395906 KCNJ4P48050 445 aa12.1□□□□□ -0.47
CDRT1-204ENST00000395906 NBPF1Q3BBV0 1214 aa12.1□□□□□ -0.47
CDRT1-204ENST00000395906 MYRIPQ8NFW9 859 aa12.1□□□□□ -0.47
CDRT1-204ENST00000395906 PTMSP20962 102 aa12.1□□□□□ -0.47
CDRT1-204ENST00000395906 HAP1P54257 671 aaPredicted RBP12.1□□□□□ -0.47
CDRT1-204ENST00000395906 KDM2AQ9Y2K7 1162 aa12.1□□□□□ -0.47
CDRT1-204ENST00000395906 ZNF771Q7L3S4 317 aaPredicted RBP12.09□□□□□ -0.47
CDRT1-204ENST00000395906 HDAC5Q9UQL6 1122 aa12.09□□□□□ -0.47
CDRT1-204ENST00000395906 ZFYVE16Q7Z3T8 1539 aa12.09□□□□□ -0.47
CDRT1-204ENST00000395906 ARAP3Q8WWN8 1544 aa12.09□□□□□ -0.47
CDRT1-204ENST00000395906 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.09□□□□□ -0.47
CDRT1-204ENST00000395906 DIP2BQ9P265 1576 aa12.09□□□□□ -0.47
CDRT1-204ENST00000395906 ATP7AQ04656 1500 aa12.08□□□□□ -0.48
CDRT1-204ENST00000395906 MAPK8IP2Q13387 824 aaPredicted RBP12.08□□□□□ -0.48
CDRT1-204ENST00000395906 ZNF710Q8N1W2 664 aa12.08□□□□□ -0.48
CDRT1-204ENST00000395906 UPF2Q9HAU5 1272 aaKnown RBP12.08□□□□□ -0.48
CDRT1-204ENST00000395906 ZKSCAN5Q9Y2L8 839 aa12.08□□□□□ -0.48
CDRT1-204ENST00000395906 ZNF518AQ6AHZ1 1483 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 POGZQ7Z3K3 1410 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 SEC24BO95487 1268 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 MLECQ14165 292 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 CERS3Q8IU89 383 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 CNPY4Q8N129 248 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 YY1AP1Q9H869 796 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 YEATS2Q9ULM3 1422 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 AXDND1Q5T1B0 1012 aaPredicted RBP12.07□□□□□ -0.48
CDRT1-204ENST00000395906 KCNG1Q9UIX4 513 aa12.07□□□□□ -0.48
CDRT1-204ENST00000395906 CCDC66A2RUB6 948 aa12.06□□□□□ -0.48
CDRT1-204ENST00000395906 PSEN1P49768 467 aa12.06□□□□□ -0.48
CDRT1-204ENST00000395906 TBC1D32Q96NH3 1257 aa12.06□□□□□ -0.48
CDRT1-204ENST00000395906 SENP3Q9H4L4 574 aaPredicted RBP12.06□□□□□ -0.48
CDRT1-204ENST00000395906 PANK3Q9H999 370 aa12.06□□□□□ -0.48
CDRT1-204ENST00000395906 COL17A1Q9UMD9 1497 aaPredicted RBP12.06□□□□□ -0.48
CDRT1-204ENST00000395906 FAM135AQ9P2D6 1515 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 GTF2F1P35269 517 aaKnown RBP eCLIP12.05□□□□□ -0.48
CDRT1-204ENST00000395906 CNKSR2Q8WXI2 1034 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 MAP3K4Q9Y6R4 1608 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 DUOX2Q9NRD8 1548 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 CFAP65Q6ZU64 1925 aaKnown RBP12.05□□□□□ -0.48
CDRT1-204ENST00000395906 BRD4O60885 1362 aaPredicted RBP12.05□□□□□ -0.48
CDRT1-204ENST00000395906 IBTKQ9P2D0 1353 aaPredicted RBP12.05□□□□□ -0.48
CDRT1-204ENST00000395906 NBPF8Q3BBV2 869 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 C20orf194Q5TEA3 1177 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 AEBP1Q8IUX7 1158 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 PRIMPOLQ96LW4 560 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 TSPYL1Q9H0U9 437 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 KIDINS220Q9ULH0 1771 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 MAST1Q9Y2H9 1570 aa12.05□□□□□ -0.48
CDRT1-204ENST00000395906 HSP90B1P14625 803 aaKnown RBP12.04□□□□□ -0.48
CDRT1-204ENST00000395906 TIGD1Q96MW7 591 aa12.04□□□□□ -0.48
CDRT1-204ENST00000395906 SLC52A1Q9NWF4 448 aa12.04□□□□□ -0.48
CDRT1-204ENST00000395906 GEMIN8Q9NWZ8 242 aaKnown RBP12.04□□□□□ -0.48
CDRT1-204ENST00000395906 RTEL1-TNFRSF6BF6WH68 1400 aa12.04□□□□□ -0.48
CDRT1-204ENST00000395906 RBM25P49756 843 aaKnown RBP12.04□□□□□ -0.48
CDRT1-204ENST00000395906 HMGN5P82970 282 aaKnown RBP12.04□□□□□ -0.48
CDRT1-204ENST00000395906 SPRYD3Q8NCJ5 442 aa12.04□□□□□ -0.48
CDRT1-204ENST00000395906 ZNF622Q969S3 477 aaKnown RBP eCLIP12.04□□□□□ -0.48
CDRT1-204ENST00000395906 ROCK2O75116 1388 aaKnown RBP12.03□□□□□ -0.48
CDRT1-204ENST00000395906 APPP05067 770 aa12.03□□□□□ -0.48
CDRT1-204ENST00000395906 GABPB1Q06547 395 aaPredicted RBP12.03□□□□□ -0.48
CDRT1-204ENST00000395906 PDLIM2Q96JY6 352 aa12.03□□□□□ -0.48
CDRT1-204ENST00000395906 MAPK8IP3Q9UPT6 1336 aa12.03□□□□□ -0.48
CDRT1-204ENST00000395906 NINLQ9Y2I6 1382 aa12.03□□□□□ -0.48
CDRT1-204ENST00000395906 PLXNC1O60486 1568 aa12.03□□□□□ -0.48
CDRT1-204ENST00000395906 SPATA31E1Q6ZUB1 1445 aa12.03□□□□□ -0.48
CDRT1-204ENST00000395906 WWC1Q8IX03 1113 aa12.03□□□□□ -0.48
CDRT1-204ENST00000395906 GBP4Q96PP9 640 aa12.03□□□□□ -0.48
CDRT1-204ENST00000395906 NEO1Q92859 1461 aa12.02□□□□□ -0.48
CDRT1-204ENST00000395906 SOX12O15370 315 aa12.02□□□□□ -0.48
CDRT1-204ENST00000395906 KIF3AQ9Y496 699 aa12.02□□□□□ -0.48
CDRT1-204ENST00000395906 ERBINQ96RT1 1412 aa12.02□□□□□ -0.49
CDRT1-204ENST00000395906 KIF13AQ9H1H9 1805 aa12.02□□□□□ -0.49
CDRT1-204ENST00000395906 TULP2O00295 520 aa12.02□□□□□ -0.49
CDRT1-204ENST00000395906 IGSF3O75054 1194 aa12.02□□□□□ -0.49
CDRT1-204ENST00000395906 INO80Q9ULG1 1556 aaPredicted RBP12.01□□□□□ -0.49
CDRT1-204ENST00000395906 SPDYE4A6NLX3 237 aa12.01□□□□□ -0.49
CDRT1-204ENST00000395906 CDCA7LQ96GN5 454 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms